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(-) Description

Title :  NICKED DECAMER DNA WITH PEG6 TETHER, NMR, 30 STRUCTURES
 
Authors :  W. Bocian, L. Kozerski, A. P. Mazurek, R. Kawecki
Date :  13 Oct 00  (Deposition) - 14 Mar 01  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B,C  (30x)
Keywords :  Nicked Duplex Dna, Peg6 Tether (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Kozerski, A. P. Mazurek, R. Kawecki, W. Bocian, P. Krajewski, E. Bednarek, J. Sitkowski, M. P. Williamson, A. J. Moir, P. E. Hansen
A Nicked Duplex Decamer Dna With A Peg(6) Tether.
Nucleic Acids Res. V. 29 1132 2001
PubMed-ID: 11222763  |  Reference-DOI: 10.1093/NAR/29.5.1132
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(P*GP*CP*GP*TP*T)-3'
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - 5'-D(*GP*TP*CP*GP*C)-3'
    Chains: B
    Engineered: YES
    Synthetic: YES
 
Molecule 3 - 5'-D(P*GP*CP*GP*AP*CP*AP*AP*CP*GP*C)-3'
    Chains: C
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (30x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1PE62Ligand/IonPHOSPHORYL-HEXAETHYLENE GLYCOL

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDG A:1 , DC C:10BINDING SITE FOR RESIDUE PE6 C 11
2AC2SOFTWAREDC B:10 , DG C:1BINDING SITE FOR RESIDUE PE6 C 12

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1G1N)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1G1N)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1G1N)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:5
                                    
                  1g1n A  1 GCGTT  5


Chain B from PDB  Type:DNA  Length:5
                                    
                  1g1n B  6 GTCGC 10


Chain C from PDB  Type:DNA  Length:10
                                         
                  1g1n C  1 GCGACAACGC 10
                                    10
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1G1N)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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