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(-) Description

Title :  DNA WITH PYRENE PAIRED AT ABASIC SITE
 
Authors :  S. Smirnov, T. J. Matray, E. T. Kool, C. De Los Santos
Date :  04 Oct 00  (Deposition) - 18 Oct 00  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (8x)
Keywords :  Pyrene, Furan, Non-Polar Dna Pair (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Smirnov, T. J. Matray, E. T. Kool, C. De Los Santos
Integrity Of Duplex Structures Without Hydrogen Bonding: Dna With Pyrene Paired At Abasic Sites
Nucleic Acids Res. V. 30 5561 2002
PubMed-ID: 12490724  |  Reference-DOI: 10.1093/NAR/GKF688
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*CP*AP*CP*AP*AP*AP*CP*AP*(PYP))-3'
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - 5'-D(*GP*TP*GP*CP*(3DR)P*TP*GP*TP*TP*TP*GP*TP*G)- 3'
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (8x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

NMR Structure (2, 2)
No.NameCountTypeFull Name
13DR1Mod. Nucleotide1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
2PYP1Mod. Nucleotide2'-DEOXYRIBOFURANOSYLPYRENE-5'-MONOPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 1FZS)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1FZS)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:9
                                        
                  1fzs A  1 CACAAACAx  9
                                    |
                                    9-PYP


Chain B from PDB  Type:DNA  Length:13
                                            
                  1fzs B 14 GTGCxTGTTTGTG 26
                                |   23   
                                |        
                               18-3DR
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1FZS)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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 Related Entries

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(-) Related Entries Specified in the PDB File

1fzl 1FZL CONTAINS A DNA DUPLEX WITH A PYRENE RESIDUE PAIRED AT AN ABASIC SITE