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(-) Description

Title :  MODEL OF A HYPOTHESIZED HAMMERHEAD RIBOZYME CONFORMATIONAL CHANGE
 
Authors :  W. G. Scott, J. B. Murray
Date :  26 Jul 00  (Deposition) - 14 Aug 00  (Release) - 01 Apr 03  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,B
Keywords :  Ribozyme, Hammerhead Riboyzme, Model, Conformational Change (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. B. Murray, W. G. Scott
Does A Single Metal Ion Bridge The A-9 And Scissile Phosphate Groups In The Catalytically Active Hammerhead Ribozyme Structure?
J. Mol. Biol. V. 296 33 2000
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HAMMERHEAD RIBOZYME ENZYME STRAND
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - HAMMERHEAD RIBOZYME SUBSTRATE STRAND
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1FG1)

(-) Sites  (0, 0)

(no "Site" information available for 1FG1)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1FG1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1FG1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:RNA  Length:16
                                                 
                1fg1 A 2025 GUGGUCUGAUGAGGCC 2104
                            ||||||2070|||   
                            |||||2060||||   
                         2025|||||2070|||   
                          2024|||||2080||   
                           2023|||||2090|   
                            2022|||| 2101   
                             2021|||        
                              2030||        
                               2040|        
                                2050        


Chain B from PDB  Type:RNA  Length:25
                                                          
                1fg1 B 2114 GGCCGAAACUCGUAAGAGUCACCAC 2015
                            ||||||2153||  ||2170|    
                            ||||||||2931  |||||||    
                         2114|||||||  |2934||||||    
                          2113||||||  | 2164|||||    
                           2112|||||  |  2163||||    
                            2111||||  |   2162|||    
                             2120|||  |    2161||    
                              2130||  |     2170|    
                               2140|  |      2011    
                                2151  |
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  1fg1
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