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(-) Description

Title :  BINDING OF A MACROCYCLIC BISACRIDINE AND AMETANTRONE TO CGTACG INVOLVES SIMILAR UNUSUAL INTERCALATION PLATFORMS (AMETANTRONE COMPLEX)
 
Authors :  X. -L. Yang, H. Robinson, Y. -G. Gao, A. H. -J. Wang
Date :  20 Jul 00  (Deposition) - 07 Aug 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  High Resolution Crystal Structure, Intercalation Platform, Mad, Anticancer Drug, Drug-Dna Complex, Metal Ions, Tertiary Base Pairs (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  X. L. Yang, H. Robinson, Y. G. Gao, A. H. Wang
Binding Of A Macrocyclic Bisacridine And Ametantrone To Cgtacg Involves Similar Unusual Intercalation Platforms.
Biochemistry V. 39 10950 2000
PubMed-ID: 10998231  |  Reference-DOI: 10.1021/BI001319Z
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*TP*AP*CP*G)-3')
    ChainsA, B
    EngineeredYES
    Other DetailsSYNTHETIC DNA MOLECLUE
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
19TA1Ligand/Ion1,4-BIS-[2-(2-HYDROXY-ETHYLAMINO)-ETHYLAMINO]-ANTHRAQUINONE
2CO2Ligand/IonCOBALT (II) ION
3MG1Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDC A:5 , DG A:6 , DG B:8 , HOH B:116BINDING SITE FOR RESIDUE 9TA B 13
2AC2SOFTWAREDG B:8BINDING SITE FOR RESIDUE MG B 23
3AC3SOFTWAREDG B:12 , HOH B:121 , HOH B:122BINDING SITE FOR RESIDUE CO B 22
4AC4SOFTWAREDG A:2 , HOH A:123 , HOH A:124 , HOH A:125 , HOH A:126 , HOH A:127BINDING SITE FOR RESIDUE CO A 21

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1FDG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1FDG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:DNA  Length:6
                                     
                  1fdg A  1 CGTACG  6

Chain B from PDB  Type:DNA  Length:6
                                     
                  1fdg B  7 CGTACG 12

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1FDG)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1FDG)

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 Related Entries

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(-) Related Entries Specified in the PDB File

1fd5 BISACRIDINE/CGTACG COMPLEX IN SAME CRYSTAL LATTICE