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Title :   NMR STRUCTURE OF A DNA THREE-WAY JUNCTION

Authors :   V. Thiviyanathan, B. A. Luxon, N. B. Leontis, D. Donne, D. G. Gorenstein

Date :   09 Mar 00 (Deposition) - 20 Mar 00 (Release) - 28 Dec 11 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : H,R,X
NMR Structure *: H,R,X  (1x)

Keywords :   Three-Way-Junction, Unpaired Bases, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   V. Thiviyanathan, B. A. Luxon, N. B. Leontis, N. Illangasekare, D. G. Donne, D. G. Gorenstein
Hybrid-Hybrid Matrix Structural Refinement Of A Dna Three-Way Junction From 3D Noesy-Noesy.
J. Biomol. Nmr V. 14 209 1999
PubMed-ID: 10481274 | Reference-DOI: 10.1023/A:1008330011425

Compounds

*Molecule 1 - DNA (5'-D(GPCPTPGPCPCPAPCPCPG)-3')*
	Chains	:	X
	Engineered	:	YES
	Synthetic	:	YES

*Molecule 2 - DNA (5'-D(CPGPGPTPGPCPGPTPCPC)-3')*
	Chains	:	H
	Engineered	:	YES
	Synthetic	:	YES

*Molecule 3 - DNA (5'-D(GPGPAPCPGPTPCPGPCPAPGPC)-3')*
	Chains	:	R
	Engineered	:	YES
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

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Sequences/Alignments

NMR Structure

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Chain H from PDB  Type:DNA  Length:10
                                         
                  1ekw H 11 CGGTGCGTCC 20
                                    20

Chain R from PDB  Type:DNA  Length:12
                                           
                  1ekw R 21 GGACGTCGCAGC 32
                                    30

Chain X from PDB  Type:DNA  Length:10
                                         
                  1ekw X  1 GCTGCCACCG 10
                                    10

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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