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(-) Description

Title :  B-DODECAMER CGCGAA(TAF)TCGCG WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE
 
Authors :  M. Egli, V. Tereshko, M. Teplova, G. Minasov, A. Joachimiak, R. Sanishvili, C. M. Weeks, R. Miller, M. A. Maier, H. An, P. Dan Cook, M. Manoharan
Date :  27 Dec 99  (Deposition) - 04 Apr 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.95
Chains :  Asym./Biol. Unit :  A,B
Keywords :  0. 95 A Resolution Structure, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Egli, V. Tereshko, M. Teplova, G. Minasov, A. Joachimiak, R. Sanishvili, C. M. Weeks, R. Miller, M. A. Maier, H. An, P. Dan Cook, M. Manoharan
X-Ray Crystallographic Analysis Of The Hydration Of A- And B-Form Dna At Atomic Resolution.
Biopolymers V. 48 234 1998 (for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*CP*GP*AP*AP*(TAF) P*TP*CP*GP*CP*G)-3')
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1MG4Ligand/IonMAGNESIUM ION
2TAF2Mod. Nucleotide2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE-5'-PHOSPHATE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:26 , HOH A:28 , HOH B:27 , HOH B:29 , HOH B:30 , HOH B:31BINDING SITE FOR RESIDUE MG A 25
2AC2SOFTWARETAF B:19 , HOH B:33 , HOH B:34 , HOH B:35 , HOH B:36 , HOH B:37BINDING SITE FOR RESIDUE MG B 32
3AC3SOFTWAREHOH A:40 , HOH A:43 , HOH A:44 , HOH B:39 , HOH B:41 , HOH B:42BINDING SITE FOR RESIDUE MG B 38
4AC4SOFTWAREHOH A:46 , DA B:17 , HOH B:47 , HOH B:48 , HOH B:49 , HOH B:50BINDING SITE FOR RESIDUE MG B 45

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1DPN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1DPN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1DPN)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:12
                                           
                  1dpn A  1 CGCGAAtTCGCG 12
                                  | 10  
                                  7-TAF 


Chain B from PDB  Type:DNA  Length:12
                                           
                  1dpn B 13 CGCGAAtTCGCG 24
                                  | 22  
                                 19-TAF
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1DPN)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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