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(-) Description

Title :  COMPLEX OF A Z-DNA HEXAMER, D(CG)3, WITH SYNTHETIC POLYAMINE AT ROOM TEMPERATURE
 
Authors :  H. Ohishi, K. -I. Tomita, I. Nakanishi, M. Ohtsuchi, T. Hakoshima, A. Rich
Date :  01 Dec 99  (Deposition) - 18 Dec 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Z-Dna:Polyamine Complex, X-Ray Crystal Structure, Polyamine Binding In Minor Groove Of Z-Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Ohishi, K. Suzuki, M. Ohtsuchi, T. Hakoshima, A. Rich
The Crystal Structure Of N1-[2-(2-Amino-Ethylamino)-Ethyl]-Ethane-1, 2- Diamine (Polyamines) Binding To The Minor Groove Of D(Cgcgcg)2, Hexamer At Room Temperature
Febs Lett. V. 523 29 2002
PubMed-ID: 12123799  |  Reference-DOI: 10.1016/S0014-5793(02)02922-8
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*CP*GP*CP*GP*CP*G)-3'
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
11042Ligand/IonN,N'-BIS(2-AMINOETHYL)-1,2-ETHANEDIAMINE
2MG1Ligand/IonMAGNESIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDC A:3 , HOH A:51 , HOH A:82 , HOH A:84BINDING SITE FOR RESIDUE MG A 104
2AC2SOFTWAREDC A:3 , DG A:4 , DC A:5 , DG A:6 , HOH A:72 , HOH A:79 , HOH A:81 , HOH A:90 , HOH A:101 , DC B:9 , HOH B:15 , HOH B:22BINDING SITE FOR RESIDUE 104 A 13
3AC3SOFTWAREDC A:5 , DG A:6 , DC B:7 , DG B:8 , DG B:12 , HOH B:19 , HOH B:20 , HOH B:24 , HOH B:25 , HOH B:30 , HOH B:69 , HOH B:70 , HOH B:77 , HOH B:78 , HOH B:95BINDING SITE FOR RESIDUE 104 B 14

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1DJ6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1DJ6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:6
                                     
                  1dj6 A  1 CGCGCG  6


Chain B from PDB  Type:DNA  Length:6
                                     
                  1dj6 B  7 CGCGCG 12
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1DJ6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1DJ6)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

292d CRYSTAL STRUCTURE OF D(CG)3+PA(24) COMPLEX
293d CRYSTAL STRUCTURE OF D(CG)3+SPERMIDINE COMPLEX
336d CRYSTAL STRUCTURE OF D(CG)3+THERMOSPERMINE COMPLEX