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(-) Description

Title :  SOLUTION STRUCTURE OF A HIGHLY STABLE DNA DUPLEX CONJUGATED TO A MINOR GROOVE BINDER, NMR, MINIMIZED AVERAGE STRUCTURE
 
Authors :  S. Kumar, M. W. Reed, H. B. Gamper Junior, V. V. Gorn, E. A. Lukhtanov, M. Foti, J. West, R. B. Meyer Junior, B. I. Schweitzer
Date :  29 Aug 97  (Deposition) - 24 Dec 97  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B
Keywords :  Deoxyribonucleic Acid, Cdpi3, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Kumar, M. W. Reed, H. B. Gamper Jr. , V. V. Gorn, E. A. Lukhtanov, M. Foti, J. West, R. B. Meyer Jr. , B. I. Schweitzer
Solution Structure Of A Highly Stable Dna Duplex Conjugated To A Minor Groove Binder.
Nucleic Acids Res. V. 26 831 1998
PubMed-ID: 9443977  |  Reference-DOI: 10.1093/NAR/26.3.831
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(P*THXP*GP*AP*TP*TP*AP*TP*CP*TP*G)-3')
    Chains: A
    Engineered: YES
    Other Details: TRIPEPTIDE CDPI3 IS COVALENTLY LINKED TO THE T1 DNA RESIDUE WITH A HEXAMETHYLENE LINKER
    Other Details - Source: CDPI3 COVALENTLY LINKED TO 5' END OF DNA STRAND A WITH A HEXAMETHYLENE LINKER
    Synthetic: YES
 
Molecule 2 - DNA (5'-D(*CP*AP*GP*AP*TP*AP*AP*TP*CP*A)-3')
    Chains: B
    Engineered: YES
    Other Details: TRIPEPTIDE CDPI3 IS COVALENTLY LINKED TO THE T1 DNA RESIDUE WITH A HEXAMETHYLENE LINKER
    Other Details - Source: CDPI3 COVALENTLY LINKED TO 5' END OF DNA STRAND A WITH A HEXAMETHYLENE LINKER
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1THX1Mod. NucleotidePHOSPHONIC ACID 6-({6-[6-(6-CARBAMOYL-3,6,7,8-TETRAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBONYL)-3,6,7,8-TETRAHYDRO-3,6-DIAZA-AS-INDOCENE-2-CARBONYL]-3,6,7,8-TETRAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBONL}-AMINO)-HEXYL ESTER 5-(5-METHYL-2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-TETRAHYDRO-FURAN-2-YLMETHYL ESTER

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:10
                                         
                  1aul A  1 xGATTATCTG 10
                            |       10
                            |         
                            1-THX     


Chain B from PDB  Type:DNA  Length:10
                                         
                  1aul B 11 CAGATAATCA 20
                                    20
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NMR Structure(hide GO term definitions)
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