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(-) Description

Title :  THE SOLUTION NMR STRUCTURE OF AN (S)-A-(N6-ADENYL)-STYRENE OXIDE-RAS61 OLIGODEOXYNUCLEOTIDE MODIFIED AT THE THIRD POSITION OF THE CODON 61 REGION, MINIMIZED AVERAGE STRUCTURE
 
Authors :  B. Feng, M. P. Stone
Date :  25 Mar 97  (Deposition) - 20 Aug 97  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B
Keywords :  Dna Duplex, B-Dna, Nmr, Human N-Ras Gene, Codon 61 Sequence, S-Styrene Oxide Adduct, N6-Adenine Adduct, Major Groove Adduct, Deoxyribonucleic Acid (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  B. Feng, M. Voehler, L. Zhou, M. Passarelli, C. M. Harris, T. M. Harris, M. P. Stone
Major Groove (S)-Alpha-(N6-Adenyl)Styrene Oxide Adducts In An Oligodeoxynucleotide Containing The Human N-Ras Codon 61 Sequence: Conformations Of The S(61, 2) And S(61, 3) Sequence Isomers From 1H Nmr.
Biochemistry V. 35 7316 1996
PubMed-ID: 8652508  |  Reference-DOI: 10.1021/BI952526F
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*GP*AP*CP*AP*YP*GP*AP*AP*G)-3')
    ChainsA
    EngineeredYES
    Other Details(S)-(N6-ADENYL)-STYRENE OXIDE-RAS61-3 DNA ADDUCT
    SyntheticYES
 
Molecule 2 - DNA (5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3')
    ChainsB
    EngineeredYES
    Other Details(S)-(N6-ADENYL)-STYRENE OXIDE-RAS61-3 DNA ADDUCT
    SyntheticYES

 Structural Features

(-) Chains, Units

  
NMR Structure 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1Y1Mod. Residue2'-DEOXY-N6-(S)STYRENE OXIDE ADENOSINE MONOPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 1AGO)

(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1AGO)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:11
                                          
                  1ago A  1 CGGACAaGAAG 11
                                  | 10 
                                  7-Y  

Chain B from PDB  Type:DNA  Length:11
                                          
                  1ago B 12 CTTCTTGTCCG 22
                                    21 

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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 Related Entries

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(-) Related Entries Specified in the PDB File

1agk MINIMIZED AVERAGE STRUCTURE
1agz MINIMIZED AVERAGE STRUCTURE