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(-) Description

Title :  DUPLEX OLIGODEOXYNUCLEOTIDE CONTAINING PROPANODEOXYGUANOSINE OPPOSITE A TWO-BASE DELETION, NMR, MINIMIZED AVERAGE STRUCTURE
 
Authors :  J. P. Weisenseel, M. P. Stone
Date :  31 Mar 97  (Deposition) - 07 Jul 97  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B
Keywords :  Dna Adducts, Dna Conformation, Nmr Spectroscopy, Structural Refinement, Propanodeoxyguanosine, Salmonella Typhimurium Hisd3052, Deoxyribonucleic Acid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. P. Weisenseel, J. G. Moe, G. R. Reddy, L. J. Marnett, M. P. Stone
Structure Of A Duplex Oligodeoxynucleotide Containing Propanodeoxyguanosine Opposite A Two-Base Deletion In The (Cpg)3 Frame Shift Hotspot Of Salmonella Typhimurium Hisd3052 Determined By 1H Nmr And Restrained Molecular Dynamics.
Biochemistry V. 34 50 1995
PubMed-ID: 7819223  |  Reference-DOI: 10.1021/BI00001A007
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'- D(*AP*TP*CP*GP*CP*PP*CP*GP*GP*CP*AP*TP*G)-3')
    Chains: A
    Engineered: YES
    Other Details: DUPLEX OLIGODEOXYNUCLEOTIDE CONTAINING PROPANODEOXYGUANOSINE OPPOSITE A TWO-BASE DELETION
    Synthetic: YES
 
Molecule 2 - DNA (5'-D(*CP*AP*TP*GP*CP*CP*GP*CP*GP*AP*T)-3')
    Chains: B
    Engineered: YES
    Other Details: DUPLEX OLIGODEOXYNUCLEOTIDE CONTAINING PROPANODEOXYGUANOSINE OPPOSITE A TWO-BASE DELETION
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1P1Mod. Residue2'-DEOXY-N1,N2-PROPANO GUANOSINE MONOPHOSPHATE

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:13
                                            
                  1ag3 A -2 ATCGCgCGGCATG 11
                             ||  |   8   
                             ||  |       
                            -1|  |       
                              1  |       
                                 4-P     


Chain B from PDB  Type:DNA  Length:11
                                          
                  1ag3 B 12 CATGCCGCGAT 22
                                    21
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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NMR Structure(hide GO term definitions)
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