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Mean Amino Acid Distance
(
Help
)
Determine the mean amino acid alpha-carbon atom distance within a protein chain.
Amino Acid Selection
by amino acid pair
Any Amino Acid
Alanine (Ala, A)
Asparagine (Asn, N)
Aspartic Acid (Asp, D)
Arginine (Arg, R)
Cysteine (Cys, C)
Glutamic Acid (Glu, E)
Glutamine (Gln, Q)
Glycine (Gly, G)
Histidine (His, H)
Isoleucine (Ile, I)
Leucine (Leu, L)
Lysine (Lys, K)
Methionine (Met, M)
Phenylalanine (Phe, F)
Proline (Pro, P)
Serine (Ser, S)
Threonine (Thr, T)
Tryptophane (Trp, W)
Tyrosine (Tyr, Y)
Valine (Val, V)
Any Amino Acid
Alanine (Ala, A)
Asparagine (Asn, N)
Aspartic Acid (Asp, D)
Arginine (Arg, R)
Cysteine (Cys, C)
Glutamic Acid (Glu, E)
Glutamine (Gln, Q)
Glycine (Gly, G)
Histidine (His, H)
Isoleucine (Ile, I)
Leucine (Leu, L)
Lysine (Lys, K)
Methionine (Met, M)
Phenylalanine (Phe, F)
Proline (Pro, P)
Serine (Ser, S)
Threonine (Thr, T)
Tryptophane (Trp, W)
Tyrosine (Tyr, Y)
Valine (Val, V)
by predefined amino acid group pair
(according to
Russell, Betts & Barnes
)
Aliphatic (I,L,V)
Aromatic (F,H,W,Y)
Charged (D,E,H,K,R)
Hydrophobic (A,C,F,G,H,I,K,L,M,T,V,W,Y)
Negative (D,E)
Polar (C,D,E,H,K,N,Q,R,S,T,W,Y)
Positive (H,K,R)
Small (A,C,D,G,N,P,S,T,V)
Tiny (A,C,G,S)
Aliphatic (I,L,V)
Aromatic (F,H,W,Y)
Charged (D,E,H,K,R)
Hydrophobic (A,C,F,G,H,I,K,L,M,T,V,W,Y)
Negative (D,E)
Polar (C,D,E,H,K,N,Q,R,S,T,W,Y)
Positive (H,K,R)
Small (A,C,D,G,N,P,S,T,V)
Tiny (A,C,G,S)
by amino acid group pair
(e.g.: "Asp,Glu" and "H,K,R")
PDB Entry Selection
(by a
PDB code list
)
or select a file containing a list of PDB codes:
Options
minimum distance:
Å
maximum distance:
Å
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