Chain A from PDB Type:PROTEIN Length:205
aligned with CPSF5_HUMAN | O43809 from UniProtKB/Swiss-Prot Length:227
Alignment length:207
30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
CPSF5_HUMAN 21 GNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 227
SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...............eeee.hhh.eeeeee........hhhhhhhhhhhhhhhh..eeeeeeeeeee....eeeeeeee...eee..eee.....hhhhhhhhhhhhhhh...--....eeeeeeeeeee...................eeeeeeeee....eeeeee...eeeeeehhhhh.hhhhhhhhhhhhhhhhhh.eeee. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------NUDIX PDB: A:76-201 UniProt: 76-201 -------------------------- PROSITE
Transcript 1 (1) Exon 1.1 ------------------------------------------------------------------Exon 1.3 Exon 1.4 PDB: A:128-157 (gapsExon 1.5 PDB: A:158-183 -------------------------------------1.7 Transcript 1 (1)
Transcript 1 (2) ------------------Exon 1.2 PDB: A:39-106 UniProt: 39-106 ----------------------------------------------------------------------------Exon 1.6 PDB: A:183-221 ------ Transcript 1 (2)
3Q2T A 21 GNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD--LQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 227
30 40 50 60 70 80 90 100 110 120 130 | | 140 150 160 170 180 190 200 210 220
133 |
136
Chain B from PDB Type:PROTEIN Length:203
aligned with CPSF5_HUMAN | O43809 from UniProtKB/Swiss-Prot Length:227
Alignment length:207
30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
CPSF5_HUMAN 21 GNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 227
SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains (1) --------------NUDIX_2-3q2tB01 B:35-222 ----- Pfam domains (1)
Pfam domains (2) --------------NUDIX_2-3q2tB02 B:35-222 ----- Pfam domains (2)
Sec.struct. author ...............eeee.hhh.eeeeee........hhhhhhhhhhhhhhhhh.eeeeeeeeeeee..eeeeeeee.....ee..eee.....hhhhhhhhhhhhhh....----..eeeeeeeeeee...................eeeeeeeee....eeeeee...eeeeeehhhhh.hhhhhhhhhhhhhhhhhh.eeee. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------NUDIX PDB: B:76-201 UniProt: 76-201 -------------------------- PROSITE
Transcript 1 (1) Exon 1.1 ------------------------------------------------------------------Exon 1.3 Exon 1.4 PDB: B:128-157 (gapsExon 1.5 PDB: B:158-183 -------------------------------------1.7 Transcript 1 (1)
Transcript 1 (2) ------------------Exon 1.2 PDB: B:39-106 UniProt: 39-106 ----------------------------------------------------------------------------Exon 1.6 PDB: B:183-221 ------ Transcript 1 (2)
3Q2T B 21 GNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD----DWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 227
30 40 50 60 70 80 90 100 110 120 130 | 140 150 160 170 180 190 200 210 220
133 138
Chain C from PDB Type:PROTEIN Length:93
aligned with CPSF6_HUMAN | Q16630 from UniProtKB/Swiss-Prot Length:551
Alignment length:93
90 100 110 120 130 140 150 160 170
CPSF6_HUMAN 81 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRK 173
SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
CATH domains --------------------------------------------------------------------------------------------- CATH domains
Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeee......hhhhhhhhhhhhh...ee...eee......eeeeeeeee...hhhhhhhhhh..........eeee.hhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (2) RRM PDB: C:81-161 UniProt: 81-161 ------------ PROSITE (2)
Transcript --------------------------------------------------------------------------------------------- Transcript
3Q2T C 81 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQFLSQFEMQSRK 173
90 100 110 120 130 140 150 160 170
Chain D from PDB Type:PROTEIN Length:92
aligned with CPSF6_HUMAN | Q16630 from UniProtKB/Swiss-Prot Length:551
Alignment length:92
90 100 110 120 130 140 150 160 170
CPSF6_HUMAN 81 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSR 172
SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
CATH domains -------------------------------------------------------------------------------------------- CATH domains
Pfam domains (1) --RRM_6-3q2tD01 D:83-153 ------------------- Pfam domains (1)
Pfam domains (2) --RRM_6-3q2tD02 D:83-153 ------------------- Pfam domains (2)
Sec.struct. author .eeeee......hhhhhhhhhhhhh.....eeeeee......eeeeeeee...hhhhhhhhhhhhhh.........ee....hhhhhhhhhh Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (2) RRM PDB: D:81-161 UniProt: 81-161 ----------- PROSITE (2)
Transcript -------------------------------------------------------------------------------------------- Transcript
3Q2T D 81 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQFLSQFEMQSR 172
90 100 110 120 130 140 150 160 170
Chain E from PDB Type:RNA Length:5
3Q2T E 1 UUGUA 5
Chain F from PDB Type:RNA Length:5
3Q2T F 1 UUGUA 5
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(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |
