Chain A from PDB Type:PROTEIN Length:252
aligned with END8_ECOLI | P50465 from UniProtKB/Swiss-Prot Length:263
Alignment length:262
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261
END8_ECOLI 2 PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKPYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWRVVDTGEEPQTTRVLRVKLQTADKTILLYSASDIEMLTPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHHGALFRFKVFHRDGEPCERCGSIIEKTTLSSRPFYWCPGCQH 263
SCOP domains d2oq4a2 A:1-124 Endonuclease VIII d2oq4a1 A:125-213 Endonuclease VIII ----------d2oq4a3 A:224-262 Endonuclease VIII SCOP domains
CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .hhhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhhhh...eeeeee...eeeeee....eeeee.....eeeeee..........eeeeee...eeeeee...eeeee..hhhhhhhhhhhh.........hhhhhhhhhhh......hhhhhh.........hhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhh.----------.....................eeee....eeee...... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) FPG_CAT PDB: A:1-110 UniProt: 2-111 ---------------------------------------------------------------------------------------------------------------------ZF_FPG_2 PDB: A:228-262 PROSITE (1)
PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ZF_FPG_1 PDB: A:237-261 - PROSITE (2)
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2OQ4 A 1 PQGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWRVVDTGEEPQTTRVLRVKLQTADKTILLYSASDIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRG----------LFRFKVFHRDGEPCERCGSIIEKTTLSSRPFYWCPGCQH 262
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 | - | 230 240 250 260
213 224
Chain B from PDB Type:PROTEIN Length:250
aligned with END8_ECOLI | P50465 from UniProtKB/Swiss-Prot Length:263
Alignment length:262
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261
END8_ECOLI 2 PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKPYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWRVVDTGEEPQTTRVLRVKLQTADKTILLYSASDIEMLTPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHHGALFRFKVFHRDGEPCERCGSIIEKTTLSSRPFYWCPGCQH 263
SCOP domains d2oq4b2 B:1-124 Endonuclease VIII d2oq4b1 B:125-212 Endonuclease VIII d2oq4b3 B:223-262 Endonuclease VIII SCOP domains
CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains (1) --Fapy_DNA_glyco-2oq4B05 B:3-110 --------------H2TH-2oq4B01 B:125-212 -----------zf-FPG_IleRS-2oq4B03 Pfam domains (1)
Pfam domains (2) --Fapy_DNA_glyco-2oq4B06 B:3-110 --------------H2TH-2oq4B02 B:125-212 -----------zf-FPG_IleRS-2oq4B04 Pfam domains (2)
Sec.struct. author ..hhhhhhhhhhhhhhhh...eeeeee......hhhhhhh.....eeeee..eeeee.....eeeee.....eee.............eeeeeee...eeeee...eeeeehhhhhh.hhhhhhh.........hhhhhhhhhhh......hhhhhh.........hhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhh----------...................................--... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) FPG_CAT PDB: B:1-110 UniProt: 2-111 ---------------------------------------------------------------------------------------------------------------------ZF_FPG_2 PDB: B:228-262 PROSITE (1)
PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ZF_FPG_1 PDB: B:237-261 - PROSITE (2)
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2OQ4 B 1 PQGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWRVVDTGEEPQTTRVLRVKLQTADKTILLYSASDIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATR----------ALFRFKVFHRDGEPCERCGSIIEKTTLSSRPFYWC--CQH 262
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 | - | 230 240 250 |260
212 223 257 |
260
Chain C from PDB Type:DNA Length:11
2OQ4 C 402 GCTTCATCCTG 412
411
Chain D from PDB Type:DNA Length:12
2OQ4 D 422 CAGGAxGAAGCC 433
| 431
427-PED
Chain E from PDB Type:DNA Length:9
2OQ4 E 404 TTCATCCTG 412
Chain F from PDB Type:DNA Length:11
2OQ4 F 422 CAGGAxGAAGC 432
| 431
427-PED
| Legend: |
|
→ Mismatch |
(orange background) |
| |
- |
→ Gap |
(green background, '-', border residues have a numbering label) |
| |
|
→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
| |
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
| |
extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |
