Chain A from PDB Type:PROTEIN Length:226
aligned with SENP1_HUMAN | Q9P0U3 from UniProtKB/Swiss-Prot Length:644
Alignment length:226
428 438 448 458 468 478 488 498 508 518 528 538 548 558 568 578 588 598 608 618 628 638
SENP1_HUMAN 419 EFPEITEEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRKLL 644
SCOP domains d2iy0a1 A:419-643 Sentrin-specific protease 1 - SCOP domains
CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .....hhhhhhhhhhhhh......eeeee..eeeehhhhhh......eehhhhhhhhhhhhhhh.......eee...hhhhhhhhhhhhhhhhhhh..hhhhh.eeeeeeee..eeeeeeee....eeeee........hhhhhhhhhhhhhhhhhhh........eeee.............hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------ULP_PROTEASE PDB: A:450-614 UniProt: 450-614 ------------------------------ PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2IY0 A 419 EFPEITEEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDAGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRKLL 644
428 438 448 458 468 478 488 498 508 518 528 538 548 558 568 578 588 598 608 618 628 638
Chain B from PDB Type:PROTEIN Length:76
aligned with SUMO1_HUMAN | P63165 from UniProtKB/Swiss-Prot Length:101
Alignment length:76
31 41 51 61 71 81 91
SUMO1_HUMAN 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
SCOP domains d2iy0b_ B: automated matches SCOP domains
CATH domains 2iy0B00 B:22-97 CATH domains
Pfam domains ---------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeee......eee......hhhhhhhhhhhhh.hhh.eeeee..ee................eeeeee..ee. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------- PROSITE
Transcript 2 Exon 2.5Exon 2.6b PDB: B:30-55 Exon 2.7b PDB: B:56-79 Exon 2.9j Transcript 2
2IY0 B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
31 41 51 61 71 81 91
Chain C from PDB Type:PROTEIN Length:156
aligned with RAGP1_HUMAN | P46060 from UniProtKB/Swiss-Prot Length:587
Alignment length:156
441 451 461 471 481 491 501 511 521 531 541 551 561 571 581
RAGP1_HUMAN 432 ADVSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPEKVVSAFLKVSSVFKDEATVRMAVQDAVDALMQKAFNSSSFNSNTFLTRLLVHMGLLKSEDKVKAIANLYGPLMALNHMVQQDYFPKALAPLLLAFVTKPNSALESCSFARHSLLQTLYKV 587
SCOP domains d2iy0c1 C:432-587 Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain SCOP domains
CATH domains 2iy0C00 C:432-587 [code=1.25.40.200, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ..hhhhhhh.hhhhhhhh..hhhhhhhhhh...hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..............hhhhhhhhhhhh.......hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript 1 (1) Exon 1.16b PDB: C:432-460 Exon 1.17b PDB: C:461-495 -----------------------------Exon 1.19 PDB: C:525-565 ---------------------- Transcript 1 (1)
Transcript 1 (2) ---------------------------------------------------------------Exon 1.18 PDB: C:495-524 ----------------------------------------Exon 1.20c Transcript 1 (2)
2IY0 C 432 ADVSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPEKVVSAFLKVSSVFKDEATVRMAVQDAVDALMQKAFNSSSFNSNTFLTRLLVHMGLLKSEDKVKAIANLYGPLMALNHMVQQDYFPKALAPLLLAFVTKPNSALESCSFARHSLLQTLYKV 587
441 451 461 471 481 491 501 511 521 531 541 551 561 571 581
| Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |
