Chain A from PDB Type:PROTEIN Length:203
aligned with K1KB4_MOUSE | P00757 from UniProtKB/Swiss-Prot Length:256
Alignment length:228
38 48 58 68 78 88 98 108 118 128 138 148 158 168 178 188 198 208 218 228 238 248
K1KB4_MOUSE 29 NSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMANNP 256
SCOP domains d1sgfa_ A: 7S NGF protease subunits SCOP domains
CATH domains 1sg1sgfA02 A:28-120,A:233-246 Trypsin-like s e rine proteases 1sgfA01 A:25-27,A : 121-232 Trypsin-like serine proteases 1sgfA02 CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
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SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------K------------------------------------------------------------------------ SAPs(SNPs)
PROSITE (2) ---------------------------TRYPSI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1SGF A 25 NSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKYQVWLGK----E-EPSDQHRLVSKAIPHPDFNMSLL----PQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLAS-------I---------CVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMANNP 246
34 || 45 55 || 66 | |-| | 86 95A||| 95K 105 115 125| 137 | 147 157 167 177 186A| 195 |209 219 | 228 238
36| 61| 70 75 | | 95A||| 95I|| 125| 139 147 157 186A| 202| 222A
38 63 78 | 95B|| 95J| 128 186B 207
79A 95C| 95K
95D
Chain B from PDB Type:PROTEIN Length:109
aligned with NGF_MOUSE | P01139 from UniProtKB/Swiss-Prot Length:241
Alignment length:109
140 150 160 170 180 190 200 210 220 230
NGF_MOUSE 131 GEFSVCDSVSVWVGDKTTATDIKGKEVTVLAEVNINNSVFRQYFFETKCRASNPVESGCRGIDSKHWNSYCTTTHTFVKALTTDEKQAAWRFIRIDTACVCVLSRKATR 239
SCOP domains d1sgfb_ B: beta-Nerve growth factor SCOP domains
CATH domains 1sgfB00 B:10-118 Cystine-knot cytokines CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .......eeeeee....eee.....eee...............eeeeee.................eeeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeee.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (2) ---------------------------------------------------------NGF_1 -------------------------------------- PROSITE (2)
Transcript ------------------------------------------------------------------------------------------------------------- Transcript
1SGF B 10 GEFSVCDSVSVWVGDKTTATDIKGKEVTVLAEVNINNSVFRQYFFETKCRASNPVESGCRGIDSKHWNSYCTTTHTFVKALTTDEKQAAWRFIRIDTACVCVLSRKATR 118
19 29 39 49 59 69 79 89 99 109
Chain G from PDB Type:PROTEIN Length:232
aligned with K1KB3_MOUSE | P00756 from UniProtKB/Swiss-Prot Length:261
Alignment length:237
34 44 54 64 74 84 94 104 114 124 134 144 154 164 174 184 194 204 214 224 234 244 254
K1KB3_MOUSE 25 IVGGFKCEKNSQPWHVAVYRYTQYLCGGVLLDPNWVLTAAHCYDDNYKVWLGKNNLFKDEPSAQHRFVSKAIPHPGFNMSLMRKHIRFLEYDYSNDLMLLRLSKPADITDTVKPITLPTEEPKLGSTCLASGWGSITPTKFQFTDDLYCVNLKLLPNEDCAKAHIEKVTDAMLCAGEMDGGKDTCKGDSGGPLICDGVLQGITSWGHTPCGEPDMPGVYTKLNKFTSWIKDTMAKNP 261
SCOP domains d1sgfg_ G: 7S NGF protease subunits SCOP domains
CATH domains 1sgfG01 1sgfG02 G:28-120,G:233-245 Trypsin-like serine proteases 1sgfG01 G:16-27,G:121-232 Trypsin-like serine proteases 1sgfG02 - CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ........hhhh..eeeeee..eeeeeeeeee..eeee.hhh.....eeee............eeeeeeeeee.....hhh.-----..........eeeee........................eeeeee...............eeeeeeee.hhhhhhh........eeeee...............eeee..eeeeeeee...........eeeeehhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) TRYPSIN_DOM PDB: G:16-243 UniProt: 25-258 --- PROSITE (1)
PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRYPSIN_SER ------------------------------------------- PROSITE (2)
PROSITE (3) ------------------------------------TRYPSI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1SGF G 16 IVGGFKCEKNSQPWHVAVYRYTQYLCGGVLLDPNWVLTAAHCYDDNYKVWLGKNNLFKDEPSAQHRFVSKAIPHPGFNMSLM-----FLEYDYSNDLMLLRLSKPADITDTVKPITLPTEEPKLGSTCLASGWGSITPTKFQFTDDLYCVNLKLLPNEDCAKAHIEKVTDAMLCAGEMDGGKDTCKGDSGGPLICDGVLQGITSWGHTPCGEPDMPGVYTKLNKFTSWIKDTMAKNP 246
25 35|| 46 56 || 67 |78 | 87 95B|| |96 106 116 128 138 148 158 168 178 186B 196 ||210 220 | 229 239
36| 61| 75| | 95A||| 95J| 125| 186A| 202| 222A
38 63 77 | 95B|| 95K 128 186B 207
79A 95C|
95D
Chain X from PDB Type:PROTEIN Length:202
aligned with K1KB4_MOUSE | P00757 from UniProtKB/Swiss-Prot Length:256
Alignment length:225
39 49 59 69 79 89 99 109 119 129 139 149 159 169 179 189 199 209 219 229 239 249
K1KB4_MOUSE 30 SQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMAN 254
SCOP domains d1sgfx_ X: 7S NGF protease subunits SCOP domains
CATH domains 1s1sgfX02 X:28-120,X:233-244 Trypsin-like s e rine proteases 1sgfX01 X:26-27,X: 1 21-232 Trypsin-like serine proteases 1sgfX02 CATH domains
Pfam domains (1) Trypsin-1sgfX01 X:26-238 ------ Pfam domains (1)
Pfam domains (2) Trypsin-1sgfX02 X:26-238 ------ Pfam domains (2)
Sec.struct. author ....eeeeee.....eeeeeee..eeee.hhh....eeeee..------.--.eee.eeeeee.....hhh................eeeee........................eeee..----.-----------..eee...hhhhhhh........eeee................eeee..eeeeee.............eeeee.hhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------K---------------------------------------------------------------------- SAPs(SNPs)
PROSITE (2) --------------------------TRYPSI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1SGF X 26 SQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKYQVWLGK------D--DQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASG----T-----------CVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMAN 244
35|| 46 56 || 67 | 77 | 87 95B||||||||96 106 116 128 138 | | - 158 168 178 186B 196 ||210 220 | 229 239
36| 61| 70 77 80 95A||||||95J| 125| 140 145 157 186A| 202| 222A
38 63 95B||||||95K 128 186B 207
95C||||||
95D|||||
95E||||
95F|||
95G||
95H|
95I
Chain Y from PDB Type:PROTEIN Length:111
aligned with NGF_MOUSE | P01139 from UniProtKB/Swiss-Prot Length:241
Alignment length:111
138 148 158 168 178 188 198 208 218 228 238
NGF_MOUSE 129 HMGEFSVCDSVSVWVGDKTTATDIKGKEVTVLAEVNINNSVFRQYFFETKCRASNPVESGCRGIDSKHWNSYCTTTHTFVKALTTDEKQAAWRFIRIDTACVCVLSRKATR 239
SCOP domains d1sgfy_ Y: beta-Nerve growth factor SCOP domains
CATH domains 1sgfY00 Y:8-118 Cystine-knot cytokines CATH domains
Pfam domains (1) NGF-1sgfY01 Y:8-118 Pfam domains (1)
Pfam domains (2) NGF-1sgfY02 Y:8-118 Pfam domains (2)
Sec.struct. author .........eeeeee....eee.....eee...............eeeeee.................eeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeee.... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (2) -----------------------------------------------------------NGF_1 -------------------------------------- PROSITE (2)
Transcript --------------------------------------------------------------------------------------------------------------- Transcript
1SGF Y 8 HMGEFSVCDSVSVWVGDKTTATDIKGKEVTVLAEVNINNSVFRQYFFETKCRASNPVESGCRGIDSKHWNSYCTTTHTFVKALTTDEKQAAWRFIRIDTACVCVLSRKATR 118
17 27 37 47 57 67 77 87 97 107 117
Chain Z from PDB Type:PROTEIN Length:232
aligned with K1KB3_MOUSE | P00756 from UniProtKB/Swiss-Prot Length:261
Alignment length:237
34 44 54 64 74 84 94 104 114 124 134 144 154 164 174 184 194 204 214 224 234 244 254
K1KB3_MOUSE 25 IVGGFKCEKNSQPWHVAVYRYTQYLCGGVLLDPNWVLTAAHCYDDNYKVWLGKNNLFKDEPSAQHRFVSKAIPHPGFNMSLMRKHIRFLEYDYSNDLMLLRLSKPADITDTVKPITLPTEEPKLGSTCLASGWGSITPTKFQFTDDLYCVNLKLLPNEDCAKAHIEKVTDAMLCAGEMDGGKDTCKGDSGGPLICDGVLQGITSWGHTPCGEPDMPGVYTKLNKFTSWIKDTMAKNP 261
SCOP domains d1sgfz_ Z: 7S NGF protease subunits SCOP domains
CATH domains 1sgfZ01 1sgfZ02 Z:28-120,Z:233-245 Trypsin-like serine proteases 1sgfZ01 Z:16-27,Z:121-232 Trypsin-like serine proteases 1sgfZ02 - CATH domains
Pfam domains (1) Trypsin-1sgfZ01 Z:16-238 -------- Pfam domains (1)
Pfam domains (2) Trypsin-1sgfZ02 Z:16-238 -------- Pfam domains (2)
Sec.struct. author ..............eeeeee..eeeeeeeeee..eeee.hhh.....eeee............eeeeeeeeee.........-----..........eeeee........................eeeeee...............eeeeeeee.hhhhhhh........eeeee...............eeee..eeeeeeee...........eeeeehhh.hhhhhhhhh... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) TRYPSIN_DOM PDB: Z:16-243 UniProt: 25-258 --- PROSITE (1)
PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRYPSIN_SER ------------------------------------------- PROSITE (2)
PROSITE (3) ------------------------------------TRYPSI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1SGF Z 16 IVGGFKCEKNSQPWHVAVYRYTQYLCGGVLLDPNWVLTAAHCYDDNYKVWLGKNNLFKDEPSAQHRFVSKAIPHPGFNMSLM-----FLEYDYSNDLMLLRLSKPADITDTVKPITLPTEEPKLGSTCLASGWGSITPTKFQFTDDLYCVNLKLLPNEDCAKAHIEKVTDAMLCAGEMDGGKDTCKGDSGGPLICDGVLQGITSWGHTPCGEPDMPGVYTKLNKFTSWIKDTMAKNP 246
25 35|| 46 56 || 67 |78 | 87 95B|| |96 106 116 128 138 148 158 168 178 186B 196 ||210 220 | 229 239
36| 61| 75| | 95A||| 95J| 125| 186A| 202| 222A
38 63 77 | 95B|| 95K 128 186B 207
79A 95C|
95D
| Legend: |
|
→ Mismatch |
(orange background) |
| |
- |
→ Gap |
(green background, '-', border residues have a numbering label) |
| |
|
→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
| |
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
| |
extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |
