Chain A from PDB Type:PROTEIN Length:440
aligned with SYWC_HUMAN | P23381 from UniProtKB/Swiss-Prot Length:471
Alignment length:461
16 26 36 46 56 66 76 86 96 106 116 126 136 146 156 166 176 186 196 206 216 226 236 246 256 266 276 286 296 306 316 326 336 346 356 366 376 386 396 406 416 426 436 446 456 466
SYWC_HUMAN 7 ASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGEDYKADCPPGNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLS 467
SCOP domains d1r6ta1 A:7-60 ---------------------d1r6ta2 A:82-467 Tryptophanyl-tRNA synthetase (TrpRS) SCOP domains
CATH domains 1r6tA01 A:7-60 [code=1.10.287.10, no name defined] ---------------------1r6tA02 A:82-353 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1 1r6tA03 A:354-467 Tyrosyl-Transfer RNA Synthetase CATH domains
Pfam domains -----WHEP-TRS-1r6tA01 A:12-60 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh......---------------------..ee....ee.......hhhhhhhhhh.ee.hhhhhhhhhhhhh...hhhhhh..eeeeehhhhhhhhhhh...eeeeeee.......hhhhhhhhhhhhhhhhhhh..eeeeehhhhhhhhh..hhhhhhhhhhhhhhhhhh.......eeeeehhhhhhhh.hhhhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhhhhhh....eeeee...ee..eeeee..............hhhhhhhhhhhhh......hhhhhhhhh.....hhhhhhhhhhh.hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh...... Sec.struct. author
SAPs(SNPs) -----------------------------------------------S----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D------------ SAPs(SNPs)
PROSITE (1) -WHEP_TRS_2 PDB: A:8-60 UniProt: 8-64 ---------------------------------------------------------------------------------------------------AA_TRNA_LIG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
PROSITE (2) ------------WHEP_TRS_1 PDB: A:19-47 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
Transcript 1 (1) Exon 1.3 PDB: A:7-33 Exon 1.4 PDB: A:34-105 (gaps) UniProt: 34-105 -----------------------------------Exon 1.6 PDB: A:141-181 UniProt: 141-181------------------------------------------------------------Exon 1.8 PDB: A:242-276 -------------------------------------Exon 1.10 PDB: A:314-371 UniProt: 314-371 Exon 1.11 PDB: A:372-418 UniProt: 372-418 Exon 1.12b PDB: A:419-467 UniProt: 419-471 Transcript 1 (1)
Transcript 1 (2) --------------------------------------------------------------------------------------------------Exon 1.5 PDB: A:105-141 ---------------------------------------Exon 1.7 PDB: A:181-242 UniProt: 181-242 ---------------------------------Exon 1.9 PDB: A:276-313 ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
1R6T A 7 ASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKmLVSLKmSYKAAAGEDYKA---------------------EDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDmNQVLDAYENKKPFYLYTGRGPSSEAmHVGHLIPFIFTKWLQDVFNVPLVIQmTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYmGmSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRmTRDVAPRIGYPKPALLHSTFFPALQGAQTKmSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFmYLTFFLEDDDKLEQIRKDYTSGAmLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFmTPRKLA 467
16 26 36 | 46 | 56 | - - | 86 96 106 116 126 136 |146 156 166 | 176 186 196 206 216 226 236 | |246 256 266 276 286 296 306 316 | 326 336 346 | 356 366 376 386 396 | 406 416 426 436 446 456 | 466
42-MSE | 60 82 143-MSE 169-MSE 195-MSE 241-MSE 319-MSE 350-MSE 401-MSE 425-MSE 461-MSE
48-MSE 243-MSE
Chain B from PDB Type:PROTEIN Length:362
aligned with SYWC_HUMAN | P23381 from UniProtKB/Swiss-Prot Length:471
Alignment length:371
106 116 126 136 146 156 166 176 186 196 206 216 226 236 246 256 266 276 286 296 306 316 326 336 346 356 366 376 386 396 406 416 426 436 446 456 466
SYWC_HUMAN 97 GIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLS 467
SCOP domains d1r6tb_ B: Tryptophanyl-tRNA synthetase (TrpRS) SCOP domains
CATH domains 1r6tB01 B:97-345 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1 ---------1r6tB02 B:355-467 Tyrosyl-Transfer RNA Synthetase CATH domains
Pfam domains (1) ------------------------------------------------------tRNA-synt_1b-1r6tB01 B:151-443 ------------------------ Pfam domains (1)
Pfam domains (2) ------------------------------------------------------tRNA-synt_1b-1r6tB02 B:151-443 ------------------------ Pfam domains (2)
Sec.struct. author ..hhhhhhhhhh.ee.hhhhhhhhhhhhh...hhhhhh..eeeeehhhhhhhhhhh....eeeeee.......hhhhhhhhhhhhhhhhhhh..eeeeehhhhhhhhh..hhhhhhhhhhhhhhhhhh.......eeeeehhhhhhhh.hhhhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh......eeeeee..hhhhhhhhhhhhhhh.....eeeee........---------.........hhhhhhhhhhhhh......hhhhhhhhh.....hhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D------------ SAPs(SNPs)
PROSITE (1) -------------------------------------------------------------------AA_TRNA_LIG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
Transcript 1 (1) Exon 1.4 -----------------------------------Exon 1.6 PDB: B:141-181 UniProt: 141-181------------------------------------------------------------Exon 1.8 PDB: B:242-276 -------------------------------------Exon 1.10 PDB: B:314-371 (gaps) UniProt: 314-371 Exon 1.11 PDB: B:372-418 UniProt: 372-418 Exon 1.12b PDB: B:419-467 UniProt: 419-471 Transcript 1 (1)
Transcript 1 (2) --------Exon 1.5 PDB: B:105-141 ---------------------------------------Exon 1.7 PDB: B:181-242 UniProt: 181-242 ---------------------------------Exon 1.9 PDB: B:276-313 ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
1R6T B 97 GIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDmNQVLDAYENKKPFYLYTGRGPSSEAmHVGHLIPFIFTKWLQDVFNVPLVIQmTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYmGmSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRmTRDVAPRIGYPKPALLHSTFFPALQG---------PNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFmYLTFFLEDDDKLEQIRKDYTSGAmLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFmTPRKLA 467
106 116 126 136 |146 156 166 | 176 186 196 206 216 226 236 | |246 256 266 276 286 296 306 316 | 326 336 |- 356 366 376 386 396 | 406 416 426 436 446 456 | 466
143-MSE 169-MSE 195-MSE 241-MSE 319-MSE 345 355 401-MSE 425-MSE 461-MSE
243-MSE
| Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
| |
extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |
