Chain A from PDB Type:PROTEIN Length:375
aligned with PEDF_HUMAN | P36955 from UniProtKB/Swiss-Prot Length:418
Alignment length:383
45 55 65 75 85 95 105 115 125 135 145 155 165 175 185 195 205 215 225 235 245 255 265 275 285 295 305 315 325 335 345 355 365 375 385 395 405 415
PEDF_HUMAN 36 TGALVEEEDPFFKVPVNKLAAAVSNFGYDLYRVRSSTSPTTNVLLSPLSVATALSALSLGAEQRTESIIHRALYYDLISSPDIHGTYKELLDTVTAPQKNLKSASRIVFEKKLRIKSSFVAPLEKSYGTRPRVLTGNPRLDLQEINNWVQAQMKGKLARSTKEIPDEISILLLGVAHFKGQWVTKFDSRKTSLEDFYLDEERTVRVPMMSDPKAVLRYGLDSDLSCKIAQLPLTGSMSIIFFLPLKVTQNLTLIEESLTSEFIHDIDRELKTVQAVLTVPKLKLSYEGEVTKSLQEMKLQSLFDSPDFSKITGKPIKLTQVEHRAGFEWNEDGAGTTPSPGLQPAHLTFPLDYHLNQPFIFVLRDTDTGALLFIGKILDPRGP 418
SCOP domains d1imva_ A: Pigment epithelium-derived factor, PEDF SCOP domains
CATH domains 1imvA01 1imvA02 A:29-192,A:300-341 Antithrombin, subunit I, domain 2 1imvA01 A:16-28,A:193-299,A:342-398 Alpha-1-antitrypsin, domain 1 1imvA02 A:29-192,A:300-341 1imvA01 A:1 6-28,A:193-299,A:342-398 CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.....eeeeeeeee......hhhhhhhhhhhhh...ee...hhhhhhhhhhhhhhhhh................eeeeeeeeee..eee..hhhhheeeeee.....eeeeeeeeeeeeeeeeeee....eeeeeeee...eeeeeeee......hhhhhh..hhhhhhhhhhhheeeeeeeeee.eeeeeeeehhhhhhh...hhhhhh............eeeeeeeeeeee...eee..--------......eee....eeeeeee.....eeeeeee...... Sec.struct. author
SAPs(SNPs) ------------------------------------M-----------------------------------------------------------R---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SERPIN -------------------- PROSITE
Transcript 1 (1) Exon 1.3 PDB: A:16-75 UniProt: 29-95 [INCOMPLETE] ---------------------------------------------------Exon 1.5 PDB: A:127-195 UniProt: 147-215 -----------------------------------------------Exon 1.7 PDB: A:243-313 UniProt: 263-333 ------------------------------------------------------------------------------------- Transcript 1 (1)
Transcript 1 (2) -----------------------------------------------------------Exon 1.4 PDB: A:75-127 UniProt: 95-147 -------------------------------------------------------------------Exon 1.6 PDB: A:195-242 UniProt: 215-262 ----------------------------------------------------------------------Exon 1.8 PDB: A:313-398 (gaps) UniProt: 333-418 Transcript 1 (2)
1IMV A 16 TGALVEEEDPFFKVPVNKLAAAVSNFGYDLYRVRSSMSPTTNVLLSPLSVATALSALSLGADERTESIIHRALYYDLISSPDIHGTYKELLDTVTAPQKNLKSASRIVFEKKLRIKSSFVAPLEKSYGTRPRVLTGNPRLDLQEINNWVQAQMKGKLARSTKEIPDEISILLLGVAHFKGQWVTKFDSRKTSLEDFYLDEERTVRVPMMSDPKAVLRYGLDSDLSCKIAQLPLTGSMSIIFFLPLKVTQNLTLIEESLTSEFIHDIDRELKTVQAVLTVPKLKLSYEGEVTKSLQEMKLQSLFDSPDFSKITGKPIKLTQVEHRAGFEWNEDGAGTT--------HLTFPLDYHLNQPFIFVLRDTDTGALLFIGKILDPRGP 398
25 35 45 55 65 75 85 95 105 115 125 135 145 155 165 175 185 195 205 215 225 235 245 255 265 275 285 295 305 315 325 335 345 | - | 365 375 385 395
352 361
| Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |
