GO2PDB - JenaLib

Search term(s): GO:1903311

Here you see a subgraph of the complete GO graph, with your query GO:1903311 as the highest hiearchical level and all levels of lower hierarchy. The number of PDB entries, for which a UniProt entry annotated with the corresponding GO term is available, is shown in square brackets for all hiearchical levels of the subgraph.

regulation of mRNA metabolic process (GO:1903311)
- negative regulation of mRNA metabolic process (GO:1903312)
  - negative regulation of mRNA catabolic process (GO:1902373)
    - mRNA stabilization (GO:0048255)
      [108 PDB entries]
    - negative regulation of mitochondrial mRNA catabolic process (GO:1905638)
    - negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (GO:1900152)
      [8 PDB entries]
    - negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (GO:2000623)
      [31 PDB entries]
  - negative regulation of mRNA cleavage (GO:0031438)
  - negative regulation of mRNA modification (GO:0090367)
    [3 PDB entries]
  - negative regulation of mRNA processing (GO:0050686)
    - negative regulation of mRNA 3'-end processing (GO:0031441)
      [5 PDB entries]
    - negative regulation of mRNA splicing, via spliceosome (GO:0048025)
      [158 PDB entries]
    - suppression by virus of host mRNA processing (GO:0039524)
      [40 PDB entries]
- positive regulation of mRNA metabolic process (GO:1903313)
  - positive regulation of mRNA catabolic process (GO:0061014)
    [49 PDB entries]
  - positive regulation of mRNA cleavage (GO:0031439)
    [1 PDB entries]
  - positive regulation of mRNA modification (GO:0090366)
  - positive regulation of mRNA processing (GO:0050685)
    [4 PDB entries]
- regulation of mRNA catabolic process (GO:0061013)
  - negative regulation of mRNA catabolic process (GO:1902373)
    - mRNA stabilization (GO:0048255)
      [108 PDB entries]
    - negative regulation of mitochondrial mRNA catabolic process (GO:1905638)
    - negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (GO:1900152)
      [8 PDB entries]
    - negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (GO:2000623)
      [31 PDB entries]
  - positive regulation of mRNA catabolic process (GO:0061014)
    [49 PDB entries]
  - regulation of deadenylation-independent decapping of nuclear-transcribed mRNA (GO:1901834)
    - positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA (GO:1901835)
  - regulation of mitochondrial mRNA catabolic process (GO:1905637)
    - negative regulation of mitochondrial mRNA catabolic process (GO:1905638)
    - positive regulation of mitochondrial mRNA catabolic process (GO:1905639)
  - regulation of mRNA stability (GO:0043488)
    [889 PDB entries]
  - regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (GO:1900151)
    - negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (GO:1900152)
      [8 PDB entries]
    - positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (GO:1900153)
      [143 PDB entries]
    - regulation of nuclear-transcribed mRNA poly(A) tail shortening (GO:0060211)
      [1 PDB entries]
  - regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (GO:2000622)
    - negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (GO:2000623)
      [31 PDB entries]
    - positive regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (GO:2000624)
- regulation of mRNA cleavage (GO:0031437)
  - negative regulation of mRNA cleavage (GO:0031438)
  - positive regulation of mRNA cleavage (GO:0031439)
    [1 PDB entries]
- regulation of mRNA modification (GO:0090365)
  - negative regulation of mRNA modification (GO:0090367)
    [3 PDB entries]
  - positive regulation of mRNA modification (GO:0090366)
- regulation of mRNA processing (GO:0050684)
  [8 PDB entries]

Click on the GO accession number to get a tree view of the GO hierarchy without information on PDB entries. In this case your query level and all levels of higher hierarchy up to the root level Gene_Ontology (GO:0003673) are displayed.

If you enter the GO tree somewhere and if you want to get a view of the whole tree first click on the GO name. This yields the low-hierarchy part. Then click on the GO accession number of the lowest hierarchical level. This gives a view of the complete tree. Note, that certain GO terms belong to more than one path.

GO2PDB@JenaLib
Tue Jul 9 10:48:17 2019