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   Search term(s): GO:1901605

Here you see a subgraph of the complete GO graph, with your query GO:1901605 as the highest hiearchical level and all levels of lower hierarchy. The number of PDB entries, for which a UniProt entry annotated with the corresponding GO term is available, is shown in square brackets for all hiearchical levels of the subgraph.

• alpha-amino acid metabolic process (GO:1901605)
  [1 PDB entries]
  
  
• 1-aminocyclopropane-1-carboxylate metabolic process (GO:0018871)
  [6 PDB entries]
  
  
• 1-aminocyclopropane-1-carboxylate biosynthetic process (GO:0042218)
  [7 PDB entries]
  
  
• 1-aminocyclopropane-1-carboxylate catabolic process (GO:0042217)
• regulation of 1-aminocyclopropane-1-carboxylate metabolic process (GO:0010602)
• 3-cyano-L-alanine metabolic process (GO:1903558)
  • 3-cyano-L-alanine biosynthetic process (GO:1903560)
  • 3-cyano-L-alanine catabolic process (GO:1903559)
• 4-hydroxyproline metabolic process (GO:0019471)
  [18 PDB entries]
  
  
• 4-hydroxyproline biosynthetic process (GO:0019472)
• 4-hydroxyproline catabolic process (GO:0019470)
  [7 PDB entries]
  
  
• peptidyl-proline hydroxylation to 4-hydroxy-L-proline (GO:0018401)
  [49 PDB entries]
  
  
• alpha-amino acid biosynthetic process (GO:1901607)
  • 1-aminocyclopropane-1-carboxylate biosynthetic process (GO:0042218)
    [7 PDB entries]
    
    
  • 3-cyano-L-alanine biosynthetic process (GO:1903560)
  • 4-hydroxyproline biosynthetic process (GO:0019472)
  • aspartate family amino acid biosynthetic process (GO:0009067)
    • asparagine biosynthetic process (GO:0006529)
      [12 PDB entries]
      
      
    • aspartate biosynthetic process (GO:0006532)
      [23 PDB entries]
      
      
    • hydroxylysine biosynthetic process (GO:0046947)
    • L-isoleucine biosynthetic process (GO:1901705)
    • lysine biosynthetic process (GO:0009085)
      [270 PDB entries]
      
      
    • methionine biosynthetic process (GO:0009086)
      [291 PDB entries]
      
      
    • threonine biosynthetic process (GO:0009088)
      [91 PDB entries]
      
      
  • citrulline biosynthetic process (GO:0019240)
    [17 PDB entries]
    
    
  • negative regulation of citrulline biosynthetic process (GO:1903249)
    [2 PDB entries]
    
    
  • positive regulation of citrulline biosynthetic process (GO:1903250)
  • regulation of citrulline biosynthetic process (GO:1903248)
  • creatine biosynthetic process (GO:0006601)
    [29 PDB entries]
    
    
  • D-amino acid biosynthetic process (GO:0046437)
    [9 PDB entries]
    
    
  • D-alanine biosynthetic process (GO:0030632)
    [51 PDB entries]
    
    
  • D-leucine biosynthetic process (GO:1900833)
  • D-serine biosynthetic process (GO:0070179)
    [12 PDB entries]
    
    
  • D-tyrosine biosynthetic process (GO:1900830)
  • discadenine biosynthetic process (GO:0034268)
  • erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process (GO:1902223)
    • L-phenylalanine biosynthetic process (GO:0009094)
      [113 PDB entries]
      
      
  • glutamine family amino acid biosynthetic process (GO:0009084)
    • arginine biosynthetic process (GO:0006526)
      [210 PDB entries]
      
      
    • glutamate biosynthetic process (GO:0006537)
      [81 PDB entries]
      
      
    • glutamine biosynthetic process (GO:0006542)
      [38 PDB entries]
      
      
    • proline biosynthetic process (GO:0006561)
      [99 PDB entries]
      
      
  • histidine biosynthetic process (GO:0000105)
    [158 PDB entries]
    
    
  • homocysteine biosynthetic process (GO:0071268)
    [16 PDB entries]
    
    
  • L-homocysteine biosynthetic process (GO:0071269)
  • homomethionine biosynthetic process (GO:0033322)
  • isoleucine biosynthetic process (GO:0009097)
    [117 PDB entries]
    
    
  • L-isoleucine biosynthetic process (GO:1901705)
  • L-dopa biosynthetic process (GO:1903185)
    • negative regulation of L-dopa biosynthetic process (GO:1903196)
    • positive regulation of L-dopa biosynthetic process (GO:1903197)
      [45 PDB entries]
      
      
    • regulation of L-dopa biosynthetic process (GO:1903195)
  • leucine biosynthetic process (GO:0009098)
    [102 PDB entries]
    
    
  • D-leucine biosynthetic process (GO:1900833)
  • negative regulation of leucine biosynthetic process (GO:2001277)
  • positive regulation of leucine biosynthetic process (GO:2001278)
    [3 PDB entries]
    
    
  • regulation of leucine biosynthetic process (GO:2001276)
  • N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthetic process (GO:0052709)
    • N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthesis from histidine (GO:0052707)
      [7 PDB entries]
      
      
  • ornithine biosynthetic process (GO:0006592)
    [8 PDB entries]
    
    
  • phosphoarginine biosynthetic process (GO:0046312)
  • pyruvate family amino acid biosynthetic process (GO:0009079)
    • alanine biosynthetic process (GO:0006523)
      [29 PDB entries]
      
      
  • sarcosine biosynthetic process (GO:1901054)
  • serine family amino acid biosynthetic process (GO:0009070)
    [16 PDB entries]
    
    
  • cysteine biosynthetic process (GO:0019344)
    [139 PDB entries]
    
    
  • D-serine biosynthetic process (GO:0070179)
    [12 PDB entries]
    
    
  • glycine biosynthetic process (GO:0006545)
    [448 PDB entries]
    
    
  • homoserine biosynthetic process (GO:0009090)
    [11 PDB entries]
    
    
  • L-homocysteine biosynthetic process (GO:0071269)
  • L-serine biosynthetic process (GO:0006564)
    [73 PDB entries]
    
    
  • selenocysteine biosynthetic process (GO:0016260)
    [21 PDB entries]
    
    
  • stachydrine biosynthetic process (GO:0019503)
  • tryptophan biosynthetic process (GO:0000162)
    [227 PDB entries]
    
    
  • tyrosine biosynthetic process (GO:0006571)
    [53 PDB entries]
    
    
  • D-tyrosine biosynthetic process (GO:1900830)
  • tyrosine biosynthetic process from chorismate via 4-hydroxyphenylpyruvate (GO:0019292)
    [2 PDB entries]
    
    
  • tyrosine biosynthetic process from chorismate via L-arogenate (GO:0033584)
  • tyrosine biosynthetic process, by oxidation of phenylalanine (GO:0019293)
  • valine biosynthetic process (GO:0009099)
    [54 PDB entries]
    
    
• alpha-amino acid catabolic process (GO:1901606)
  • 1-aminocyclopropane-1-carboxylate catabolic process (GO:0042217)
  • 3-cyano-L-alanine catabolic process (GO:1903559)
  • 4-hydroxyproline catabolic process (GO:0019470)
    [7 PDB entries]
    
    
  • aspartate family amino acid catabolic process (GO:0009068)
    • asparagine catabolic process (GO:0006530)
    • aspartate catabolic process (GO:0006533)
      [35 PDB entries]
      
      
    • hydroxylysine catabolic process (GO:0046948)
    • lysine catabolic process (GO:0006554)
      [45 PDB entries]
      
      
    • methionine catabolic process (GO:0009087)
      [5 PDB entries]
      
      
    • threonine catabolic process (GO:0006567)
      [33 PDB entries]
      
      
  • citrulline catabolic process (GO:0019241)
  • D-amino acid catabolic process (GO:0019478)
    [32 PDB entries]
    
    
  • D-alanine catabolic process (GO:0055130)
    [31 PDB entries]
    
    
  • D-cysteine catabolic process (GO:0019447)
  • D-leucine catabolic process (GO:1900832)
  • D-lysine catabolic process (GO:0019476)
  • D-serine catabolic process (GO:0036088)
    [33 PDB entries]
    
    
  • D-tyrosine catabolic process (GO:1900829)
  • D-valine catabolic process (GO:1902079)
  • octopine catabolic process (GO:0019469)
  • discadenine catabolic process (GO:0034269)
  • erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process (GO:1902222)
    • L-phenylalanine catabolic process (GO:0006559)
      [138 PDB entries]
      
      
  • glutamine family amino acid catabolic process (GO:0009065)
    • arginine catabolic process (GO:0006527)
      [553 PDB entries]
      
      
    • asparagine catabolic process (GO:0006530)
    • glutamate catabolic process (GO:0006538)
      [27 PDB entries]
      
      
    • glutamine catabolic process (GO:0006543)
      [44 PDB entries]
      
      
    • proline catabolic process (GO:0006562)
      [33 PDB entries]
      
      
  • histidine catabolic process (GO:0006548)
    [30 PDB entries]
    
    
  • ergothioneine biosynthesis from histidine via N-alpha,N-alpha,N-alpha-trimethyl-L-histidine (GO:0052704)
    [10 PDB entries]
    
    
  • histidine catabolic process to 2-oxoglutarate (GO:0019558)
  • histidine catabolic process to glutamate and formamide (GO:0019556)
    [23 PDB entries]
    
    
  • histidine catabolic process to glutamate and formate (GO:0019557)
    [23 PDB entries]
    
    
  • histidine catabolic process to hydantoin-5-propionate (GO:0019560)
  • histidine catabolic process to imidazol-5-yl-lactate (GO:0019559)
  • N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthesis from histidine (GO:0052707)
    [7 PDB entries]
    
    
  • homocysteine catabolic process (GO:0043418)
    [21 PDB entries]
    
    
  • isoleucine catabolic process (GO:0006550)
    [2 PDB entries]
    
    
  • L-kynurenine catabolic process (GO:0097053)
    [13 PDB entries]
    
    
  • leucine catabolic process (GO:0006552)
    [11 PDB entries]
    
    
  • D-leucine catabolic process (GO:1900832)
  • N(omega),N(omega)-dimethyl-L-arginine catabolic process (GO:2001299)
  • N(omega)-methyl-L-arginine catabolic process (GO:2001297)
  • N-alpha,N-alpha,N-alpha-trimethyl-L-histidine catabolic process (GO:0052710)
    • ergothioneine biosynthesis from N-alpha,N-alpha,N-alpha-trimethyl-L-histidine (GO:0052711)
  • nopaline catabolic process (GO:0019468)
    • nopaline catabolic process to proline (GO:0042458)
  • ornithine catabolic process (GO:0006593)
    [9 PDB entries]
    
    
  • negative regulation of ornithine catabolic process (GO:1903267)
  • ornithine catabolic process via proline (GO:0019466)
  • ornithine catabolic process, by decarboxylation (GO:0019467)
  • positive regulation of ornithine catabolic process (GO:1903268)
  • regulation of ornithine catabolic process (GO:1903266)
  • phosphoarginine catabolic process (GO:0046313)
  • pyruvate family amino acid catabolic process (GO:0009080)
    • alanine catabolic process (GO:0006524)
      [7 PDB entries]
      
      
  • S-adenosylhomocysteine catabolic process (GO:0019510)
    [19 PDB entries]
    
    
  • sarcosine catabolic process (GO:1901053)
    [6 PDB entries]
    
    
  • serine family amino acid catabolic process (GO:0009071)
    • cysteine catabolic process (GO:0009093)
    • D-serine catabolic process (GO:0036088)
      [33 PDB entries]
      
      
    • glycine catabolic process (GO:0006546)
      [23 PDB entries]
      
      
    • homoserine catabolic process (GO:0009091)
    • L-serine catabolic process (GO:0006565)
      [28 PDB entries]
      
      
    • selenocysteine catabolic process (GO:0016261)
  • stachydrine catabolic process (GO:0019504)
  • tryptophan catabolic process (GO:0006569)
    [112 PDB entries]
    
    
  • tryptophan catabolic process to acetyl-CoA (GO:0019442)
    [12 PDB entries]
    
    
  • tryptophan catabolic process to catechol (GO:0019444)
  • tryptophan catabolic process to indole-3-acetate (GO:0019440)
  • tryptophan catabolic process to kynurenine (GO:0019441)
    [51 PDB entries]
    
    
  • tyrosine catabolic process (GO:0006572)
    [33 PDB entries]
    
    
  • D-tyrosine catabolic process (GO:1900829)
  • tyrosine catabolic process to fumarate (GO:0019445)
  • valine catabolic process (GO:0006574)
    [9 PDB entries]
    
    
  • D-valine catabolic process (GO:1902079)
  • valine catabolic process to isobutanol (GO:1902697)
• argininosuccinate metabolic process (GO:0000053)
  [6 PDB entries]
  
  
• aspartate family amino acid metabolic process (GO:0009066)
  • asparagine metabolic process (GO:0006528)
    [38 PDB entries]
    
    
  • (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine biosynthetic process from asparagine (GO:0046550)
  • asparagine biosynthetic process (GO:0006529)
    [12 PDB entries]
    
    
  • asparagine catabolic process (GO:0006530)
  • cyclization of asparagine involved in intein-mediated protein splicing (GO:0019801)
  • L-asparagine metabolic process (GO:0070982)
  • aspartate family amino acid biosynthetic process (GO:0009067)
    • asparagine biosynthetic process (GO:0006529)
      [12 PDB entries]
      
      
    • aspartate biosynthetic process (GO:0006532)
      [23 PDB entries]
      
      
    • hydroxylysine biosynthetic process (GO:0046947)
    • L-isoleucine biosynthetic process (GO:1901705)
    • lysine biosynthetic process (GO:0009085)
      [270 PDB entries]
      
      
    • methionine biosynthetic process (GO:0009086)
      [291 PDB entries]
      
      
    • threonine biosynthetic process (GO:0009088)
      [91 PDB entries]
      
      
  • aspartate family amino acid catabolic process (GO:0009068)
    • asparagine catabolic process (GO:0006530)
    • aspartate catabolic process (GO:0006533)
      [35 PDB entries]
      
      
    • hydroxylysine catabolic process (GO:0046948)
    • lysine catabolic process (GO:0006554)
      [45 PDB entries]
      
      
    • methionine catabolic process (GO:0009087)
      [5 PDB entries]
      
      
    • threonine catabolic process (GO:0006567)
      [33 PDB entries]
      
      
  • aspartate metabolic process (GO:0006531)
    [59 PDB entries]
    
    
  • aspartate biosynthetic process (GO:0006532)
    [23 PDB entries]
    
    
  • aspartate catabolic process (GO:0006533)
    [35 PDB entries]
    
    
  • glutamate catabolic process to aspartate (GO:0019550)
    [12 PDB entries]
    
    
  • glutamine catabolic process to fumarate (GO:0019460)
  • nicotinamide nucleotide biosynthetic process from aspartate (GO:0019355)
  • hydroxylysine metabolic process (GO:0046946)
    • hydroxylysine biosynthetic process (GO:0046947)
    • hydroxylysine catabolic process (GO:0046948)
  • lysine metabolic process (GO:0006553)
    • D-lysine metabolic process (GO:0046441)
      • D-lysine catabolic process (GO:0019476)
    • L-lysine metabolic process (GO:0046440)
    • lysine biosynthetic process (GO:0009085)
      [270 PDB entries]
      
      
    • lysine catabolic process (GO:0006554)
      [45 PDB entries]
      
      
  • methionine metabolic process (GO:0006555)
    [68 PDB entries]
    
    
  • methionine biosynthetic process (GO:0009086)
    [291 PDB entries]
    
    
  • methionine catabolic process (GO:0009087)
    [5 PDB entries]
    
    
  • S-adenosylmethionine cycle (GO:0033353)
    [50 PDB entries]
    
    
  • L-methionine salvage from S-adenosylmethionine (GO:0019284)
    [50 PDB entries]
    
    
  • threonine metabolic process (GO:0006566)
    [21 PDB entries]
    
    
  • threonine biosynthetic process (GO:0009088)
    [91 PDB entries]
    
    
  • threonine catabolic process (GO:0006567)
    [33 PDB entries]
    
    
• citrulline metabolic process (GO:0000052)
  [14 PDB entries]
  
  
• citrulline biosynthetic process (GO:0019240)
  [17 PDB entries]
  
  
• negative regulation of citrulline biosynthetic process (GO:1903249)
  [2 PDB entries]
  
  
• positive regulation of citrulline biosynthetic process (GO:1903250)
• regulation of citrulline biosynthetic process (GO:1903248)
• citrulline catabolic process (GO:0019241)
• creatine metabolic process (GO:0006600)
  [26 PDB entries]
  
  
• creatine biosynthetic process (GO:0006601)
  [29 PDB entries]
  
  
• glycine catabolic process to creatine (GO:0019463)
• D-amino acid metabolic process (GO:0046416)
  [59 PDB entries]
  
  
• D-alanine metabolic process (GO:0046436)
  • D-alanine biosynthetic process (GO:0030632)
    [51 PDB entries]
    
    
  • D-alanine catabolic process (GO:0055130)
    [31 PDB entries]
    
    
• D-amino acid biosynthetic process (GO:0046437)
  [9 PDB entries]
  
  
• D-alanine biosynthetic process (GO:0030632)
  [51 PDB entries]
  
  
• D-leucine biosynthetic process (GO:1900833)
• D-serine biosynthetic process (GO:0070179)
  [12 PDB entries]
  
  
• D-tyrosine biosynthetic process (GO:1900830)
• D-amino acid catabolic process (GO:0019478)
  [32 PDB entries]
  
  
• D-alanine catabolic process (GO:0055130)
  [31 PDB entries]
  
  
• D-cysteine catabolic process (GO:0019447)
• D-leucine catabolic process (GO:1900832)
• D-lysine catabolic process (GO:0019476)
• D-serine catabolic process (GO:0036088)
  [33 PDB entries]
  
  
• D-tyrosine catabolic process (GO:1900829)
• D-valine catabolic process (GO:1902079)
• octopine catabolic process (GO:0019469)
• D-arginine metabolic process (GO:0033055)
• D-cysteine metabolic process (GO:0046438)
  • D-cysteine catabolic process (GO:0019447)
• D-glutamate metabolic process (GO:0033054)
• D-glutamine metabolic process (GO:0033053)
• D-leucine metabolic process (GO:1900831)
  • D-leucine biosynthetic process (GO:1900833)
  • D-leucine catabolic process (GO:1900832)
• D-lysine metabolic process (GO:0046441)
  • D-lysine catabolic process (GO:0019476)
• D-ornithine metabolic process (GO:0033056)
• D-serine metabolic process (GO:0070178)
  [40 PDB entries]
  
  
• D-serine biosynthetic process (GO:0070179)
  [12 PDB entries]
  
  
• D-serine catabolic process (GO:0036088)
  [33 PDB entries]
  
  
• D-tyrosine metabolic process (GO:1900828)
  • D-tyrosine biosynthetic process (GO:1900830)
  • D-tyrosine catabolic process (GO:1900829)
• D-valine metabolic process (GO:1902114)
  • D-valine catabolic process (GO:1902079)
• octopine metabolic process (GO:0046419)
  • octopine catabolic process (GO:0019469)
• discadenine metabolic process (GO:0034267)
  • discadenine biosynthetic process (GO:0034268)
  • discadenine catabolic process (GO:0034269)
• erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process (GO:1902221)
  • erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process (GO:1902223)
    • L-phenylalanine biosynthetic process (GO:0009094)
      [113 PDB entries]
      
      
  • erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process (GO:1902222)
    • L-phenylalanine catabolic process (GO:0006559)
      [138 PDB entries]
      
      
  • L-phenylalanine metabolic process (GO:0006558)
    [41 PDB entries]
    
    
  • L-phenylalanine biosynthetic process (GO:0009094)
    [113 PDB entries]
    
    
  • L-phenylalanine catabolic process (GO:0006559)
    [138 PDB entries]
    
    
  • tyrosine biosynthetic process, by oxidation of phenylalanine (GO:0019293)
• glucosinolate biosynthetic process from phenylalanine (GO:0033507)
• glutamine family amino acid metabolic process (GO:0009064)
  • arginine metabolic process (GO:0006525)
    [203 PDB entries]
    
    
  • arginine biosynthetic process (GO:0006526)
    [210 PDB entries]
    
    
  • arginine catabolic process (GO:0006527)
    [553 PDB entries]
    
    
  • D-arginine metabolic process (GO:0033055)
  • putrescine biosynthetic process from arginine (GO:0033388)
    [10 PDB entries]
    
    
  • regulation of arginine metabolic process (GO:0000821)
    [9 PDB entries]
    
    
  • glutamate metabolic process (GO:0006536)
    [81 PDB entries]
    
    
  • ammonia assimilation cycle (GO:0019676)
    [7 PDB entries]
    
    
  • arginine catabolic process to glutamate (GO:0019544)
    [22 PDB entries]
    
    
  • D-glutamate metabolic process (GO:0033054)
  • glutamate biosynthetic process (GO:0006537)
    [81 PDB entries]
    
    
  • glutamate catabolic process (GO:0006538)
    [27 PDB entries]
    
    
  • histidine catabolic process to glutamate and formamide (GO:0019556)
    [23 PDB entries]
    
    
  • histidine catabolic process to glutamate and formate (GO:0019557)
    [23 PDB entries]
    
    
  • negative regulation of glutamate metabolic process (GO:2000212)
  • positive regulation of glutamate metabolic process (GO:2000213)
    [66 PDB entries]
    
    
  • proline catabolic process to glutamate (GO:0010133)
    [50 PDB entries]
    
    
  • regulation of glutamate metabolic process (GO:2000211)
    [25 PDB entries]
    
    
  • tetrapyrrole biosynthetic process from glutamate (GO:0033526)
  • glutamine family amino acid biosynthetic process (GO:0009084)
    • arginine biosynthetic process (GO:0006526)
      [210 PDB entries]
      
      
    • glutamate biosynthetic process (GO:0006537)
      [81 PDB entries]
      
      
    • glutamine biosynthetic process (GO:0006542)
      [38 PDB entries]
      
      
    • proline biosynthetic process (GO:0006561)
      [99 PDB entries]
      
      
  • glutamine family amino acid catabolic process (GO:0009065)
    • arginine catabolic process (GO:0006527)
      [553 PDB entries]
      
      
    • asparagine catabolic process (GO:0006530)
    • glutamate catabolic process (GO:0006538)
      [27 PDB entries]
      
      
    • glutamine catabolic process (GO:0006543)
      [44 PDB entries]
      
      
    • proline catabolic process (GO:0006562)
      [33 PDB entries]
      
      
  • glutamine metabolic process (GO:0006541)
    [253 PDB entries]
    
    
  • ammonia assimilation cycle (GO:0019676)
    [7 PDB entries]
    
    
  • cyclization of glutamine involved in intein-mediated protein splicing (GO:0019802)
  • D-glutamine metabolic process (GO:0033053)
  • glutamine biosynthetic process (GO:0006542)
    [38 PDB entries]
    
    
  • glutamine catabolic process (GO:0006543)
    [44 PDB entries]
    
    
  • peptidyl-L-glutamic acid 5-methyl ester biosynthetic process from glutamine (GO:0019713)
  • proline metabolic process (GO:0006560)
    [45 PDB entries]
    
    
  • arginine catabolic process to proline (GO:0019493)
  • negative regulation of proline metabolic process (GO:2000215)
  • nopaline catabolic process to proline (GO:0042458)
  • octopine catabolic process to proline (GO:0042459)
  • ornithine catabolic process via proline (GO:0019466)
  • positive regulation of proline metabolic process (GO:2000216)
  • proline biosynthetic process (GO:0006561)
    [99 PDB entries]
    
    
  • proline catabolic process (GO:0006562)
    [33 PDB entries]
    
    
  • regulation of proline metabolic process (GO:2000214)
  • regulation of glutamine family amino acid metabolic process (GO:0000820)
    • regulation of arginine metabolic process (GO:0000821)
      [9 PDB entries]
      
      
    • regulation of glutamate metabolic process (GO:2000211)
      [25 PDB entries]
      
      
    • regulation of proline metabolic process (GO:2000214)
• histidine metabolic process (GO:0006547)
  [44 PDB entries]
  
  
• histidine biosynthetic process (GO:0000105)
  [158 PDB entries]
  
  
• histidine catabolic process (GO:0006548)
  [30 PDB entries]
  
  
• ergothioneine biosynthesis from histidine via N-alpha,N-alpha,N-alpha-trimethyl-L-histidine (GO:0052704)
  [10 PDB entries]
  
  
• histidine catabolic process to 2-oxoglutarate (GO:0019558)
• histidine catabolic process to glutamate and formamide (GO:0019556)
  [23 PDB entries]
  
  
• histidine catabolic process to glutamate and formate (GO:0019557)
  [23 PDB entries]
  
  
• histidine catabolic process to hydantoin-5-propionate (GO:0019560)
• histidine catabolic process to imidazol-5-yl-lactate (GO:0019559)
• N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthesis from histidine (GO:0052707)
  [7 PDB entries]
  
  
• homocysteine metabolic process (GO:0050667)
  [44 PDB entries]
  
  
• homocysteine biosynthetic process (GO:0071268)
  [16 PDB entries]
  
  
• L-homocysteine biosynthetic process (GO:0071269)
• homocysteine catabolic process (GO:0043418)
  [21 PDB entries]
  
  
• negative regulation of homocysteine metabolic process (GO:0050669)
• positive regulation of homocysteine metabolic process (GO:0050668)
  [66 PDB entries]
  
  
• regulation of homocysteine metabolic process (GO:0050666)
  [3 PDB entries]
  
  
• negative regulation of homocysteine metabolic process (GO:0050669)
• positive regulation of homocysteine metabolic process (GO:0050668)
  [66 PDB entries]
  
  
• transsulfuration (GO:0019346)
  [21 PDB entries]
  
  
• homomethionine metabolic process (GO:0033321)
  • glucosinolate biosynthetic process from homomethionine (GO:0033506)
  • homomethionine biosynthetic process (GO:0033322)
• hypusine metabolic process (GO:0046516)
• isoleucine metabolic process (GO:0006549)
  [8 PDB entries]
  
  
• isoleucine biosynthetic process (GO:0009097)
  [117 PDB entries]
  
  
• L-isoleucine biosynthetic process (GO:1901705)
• isoleucine catabolic process (GO:0006550)
  [2 PDB entries]
  
  
• kynurenine metabolic process (GO:0070189)
  [33 PDB entries]
  
  
• L-kynurenine metabolic process (GO:0097052)
  [37 PDB entries]
  
  
• L-kynurenine catabolic process (GO:0097053)
  [13 PDB entries]
  
  
• tryptophan catabolic process to kynurenine (GO:0019441)
  [51 PDB entries]
  
  
• L-dopa metabolic process (GO:1903184)
  • L-dopa biosynthetic process (GO:1903185)
    • negative regulation of L-dopa biosynthetic process (GO:1903196)
    • positive regulation of L-dopa biosynthetic process (GO:1903197)
      [45 PDB entries]
      
      
    • regulation of L-dopa biosynthetic process (GO:1903195)
• leucine metabolic process (GO:0006551)
  [7 PDB entries]
  
  
• D-leucine metabolic process (GO:1900831)
  • D-leucine biosynthetic process (GO:1900833)
  • D-leucine catabolic process (GO:1900832)
• leucine biosynthetic process (GO:0009098)
  [102 PDB entries]
  
  
• D-leucine biosynthetic process (GO:1900833)
• negative regulation of leucine biosynthetic process (GO:2001277)
• positive regulation of leucine biosynthetic process (GO:2001278)
  [3 PDB entries]
  
  
• regulation of leucine biosynthetic process (GO:2001276)
• leucine catabolic process (GO:0006552)
  [11 PDB entries]
  
  
• D-leucine catabolic process (GO:1900832)
• N(omega),N(omega)-dimethyl-L-arginine metabolic process (GO:2001298)
  • N(omega),N(omega)-dimethyl-L-arginine catabolic process (GO:2001299)
• N(omega)-methyl-L-arginine metabolic process (GO:2001296)
  • N(omega)-methyl-L-arginine catabolic process (GO:2001297)
• N-alpha,N-alpha,N-alpha-trimethyl-L-histidine metabolic process (GO:0052708)
  • ergothioneine biosynthesis from histidine via N-alpha,N-alpha,N-alpha-trimethyl-L-histidine (GO:0052704)
    [10 PDB entries]
    
    
  • N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthetic process (GO:0052709)
    • N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthesis from histidine (GO:0052707)
      [7 PDB entries]
      
      
  • N-alpha,N-alpha,N-alpha-trimethyl-L-histidine catabolic process (GO:0052710)
    • ergothioneine biosynthesis from N-alpha,N-alpha,N-alpha-trimethyl-L-histidine (GO:0052711)
• nopaline metabolic process (GO:0046418)
  • nopaline catabolic process (GO:0019468)
    • nopaline catabolic process to proline (GO:0042458)
• ornithine metabolic process (GO:0006591)
  [38 PDB entries]
  
  
• arginine biosynthetic process via ornithine (GO:0042450)
  [56 PDB entries]
  
  
• regulation of arginine biosynthetic process via ornithine (GO:2000013)
  [3 PDB entries]
  
  
• arginine catabolic process to ornithine (GO:0019547)
  [89 PDB entries]
  
  
• D-ornithine metabolic process (GO:0033056)
• glutamate catabolic process to ornithine (GO:0019555)
• L-alanine biosynthetic process via ornithine (GO:0019273)
• ornithine biosynthetic process (GO:0006592)
  [8 PDB entries]
  
  
• ornithine catabolic process (GO:0006593)
  [9 PDB entries]
  
  
• negative regulation of ornithine catabolic process (GO:1903267)
• ornithine catabolic process via proline (GO:0019466)
• ornithine catabolic process, by decarboxylation (GO:0019467)
• positive regulation of ornithine catabolic process (GO:1903268)
• regulation of ornithine catabolic process (GO:1903266)
• putrescine biosynthetic process from ornithine (GO:0033387)
  [17 PDB entries]
  
  
• regulation of ornithine metabolic process (GO:0090368)
  • regulation of arginine biosynthetic process via ornithine (GO:2000013)
    [3 PDB entries]
    
    
  • regulation of ornithine catabolic process (GO:1903266)
• peptidyl-lysine hydroxylation to 4-hydroxy-L-lysine (GO:0018396)
• peptidyl-proline hydroxylation to 3-hydroxy-L-proline (GO:0018400)
• phosphoarginine metabolic process (GO:0006604)
  • phosphoarginine biosynthetic process (GO:0046312)
  • phosphoarginine catabolic process (GO:0046313)
• pyruvate family amino acid metabolic process (GO:0009078)
  • alanine metabolic process (GO:0006522)
    [55 PDB entries]
    
    
  • alanine biosynthetic process (GO:0006523)
    [29 PDB entries]
    
    
  • alanine catabolic process (GO:0006524)
    [7 PDB entries]
    
    
  • arginine catabolic process to alanine via ornithine (GO:0010122)
  • D-alanine family amino acid metabolic process (GO:0046144)
  • L-alanine metabolic process (GO:0042851)
    [1 PDB entries]
    
    
  • pyruvate family amino acid biosynthetic process (GO:0009079)
    • alanine biosynthetic process (GO:0006523)
      [29 PDB entries]
      
      
  • pyruvate family amino acid catabolic process (GO:0009080)
    • alanine catabolic process (GO:0006524)
      [7 PDB entries]
      
      
• S-adenosylhomocysteine metabolic process (GO:0046498)
  [104 PDB entries]
  
  
• S-adenosylhomocysteine catabolic process (GO:0019510)
  [19 PDB entries]
  
  
• S-adenosylmethionine cycle (GO:0033353)
  [50 PDB entries]
  
  
• L-methionine salvage from S-adenosylmethionine (GO:0019284)
  [50 PDB entries]
  
  
• sarcosine metabolic process (GO:1901052)
  [12 PDB entries]
  
  
• sarcosine biosynthetic process (GO:1901054)
• sarcosine catabolic process (GO:1901053)
  [6 PDB entries]
  
  
• serine family amino acid metabolic process (GO:0009069)
  [8 PDB entries]
  
  
• cysteine metabolic process (GO:0006534)
  [66 PDB entries]
  
  
• asparagine biosynthetic process from cysteine (GO:0019267)
• cysteine biosynthetic process (GO:0019344)
  [139 PDB entries]
  
  
• cysteine catabolic process (GO:0009093)
• D-cysteine metabolic process (GO:0046438)
  • D-cysteine catabolic process (GO:0019447)
• L-cysteine metabolic process (GO:0046439)
  [51 PDB entries]
  
  
• negative regulation of cysteine metabolic process (GO:1901495)
• positive regulation of cysteine metabolic process (GO:1901496)
• regulation of cysteine metabolic process (GO:1901494)
• transsulfuration (GO:0019346)
  [21 PDB entries]
  
  
• D-serine metabolic process (GO:0070178)
  [40 PDB entries]
  
  
• D-serine biosynthetic process (GO:0070179)
  [12 PDB entries]
  
  
• D-serine catabolic process (GO:0036088)
  [33 PDB entries]
  
  
• glycine metabolic process (GO:0006544)
  [122 PDB entries]
  
  
• glycine betaine biosynthetic process from glycine (GO:0019286)
• glycine biosynthetic process (GO:0006545)
  [448 PDB entries]
  
  
• glycine catabolic process (GO:0006546)
  [23 PDB entries]
  
  
• L-threonine catabolic process to glycine (GO:0019518)
  [11 PDB entries]
  
  
• protoporphyrinogen IX biosynthetic process from glycine (GO:0019352)
• tetrapyrrole biosynthetic process from glycine and succinyl-CoA (GO:0033527)
• homoserine metabolic process (GO:0009092)
  [4 PDB entries]
  
  
• homoserine biosynthetic process (GO:0009090)
  [11 PDB entries]
  
  
• homoserine catabolic process (GO:0009091)
• L-methionine biosynthetic process from L-homoserine via cystathionine (GO:0019279)
  [1 PDB entries]
  
  
• transsulfuration (GO:0019346)
  [21 PDB entries]
  
  
• L-serine metabolic process (GO:0006563)
  [104 PDB entries]
  
  
• cysteine biosynthetic process from serine (GO:0006535)
  [114 PDB entries]
  
  
• glycine biosynthetic process from serine (GO:0019264)
  [66 PDB entries]
  
  
• L-serine biosynthetic process (GO:0006564)
  [73 PDB entries]
  
  
• L-serine catabolic process (GO:0006565)
  [28 PDB entries]
  
  
• selenocysteine metabolic process (GO:0016259)
  [25 PDB entries]
  
  
• negative regulation of selenocysteine metabolic process (GO:1905826)
• positive regulation of selenocysteine metabolic process (GO:1905827)
• regulation of selenocysteine metabolic process (GO:1905825)
• selenocysteine biosynthetic process (GO:0016260)
  [21 PDB entries]
  
  
• selenocysteine catabolic process (GO:0016261)
• serine family amino acid biosynthetic process (GO:0009070)
  [16 PDB entries]
  
  
• cysteine biosynthetic process (GO:0019344)
  [139 PDB entries]
  
  
• D-serine biosynthetic process (GO:0070179)
  [12 PDB entries]
  
  
• glycine biosynthetic process (GO:0006545)
  [448 PDB entries]
  
  
• homoserine biosynthetic process (GO:0009090)
  [11 PDB entries]
  
  
• L-homocysteine biosynthetic process (GO:0071269)
• L-serine biosynthetic process (GO:0006564)
  [73 PDB entries]
  
  
• selenocysteine biosynthetic process (GO:0016260)
  [21 PDB entries]
  
  
• serine family amino acid catabolic process (GO:0009071)
  • cysteine catabolic process (GO:0009093)
  • D-serine catabolic process (GO:0036088)
    [33 PDB entries]
    
    
  • glycine catabolic process (GO:0006546)
    [23 PDB entries]
    
    
  • homoserine catabolic process (GO:0009091)
  • L-serine catabolic process (GO:0006565)
    [28 PDB entries]
    
    
  • selenocysteine catabolic process (GO:0016261)
• stachydrine metabolic process (GO:0019502)
  • stachydrine biosynthetic process (GO:0019503)
  • stachydrine catabolic process (GO:0019504)
• tryptophan metabolic process (GO:0006568)
  [210 PDB entries]
  
  
• 'de novo' NAD biosynthetic process from tryptophan (GO:0034354)
  [43 PDB entries]
  
  
• negative regulation of 'de novo' NAD biosynthetic process from tryptophan (GO:1905013)
• positive regulation of 'de novo' NAD biosynthetic process from tryptophan (GO:1905014)
• regulation of 'de novo' NAD biosynthetic process from tryptophan (GO:1905012)
  [5 PDB entries]
  
  
• indoleacetic acid biosynthetic process via tryptophan (GO:0009848)
  • negative regulation of indoleacetic acid biosynthetic process via tryptophan (GO:1901997)
  • regulation of indoleacetic acid biosynthetic process via tryptophan (GO:1901996)
• nicotinate nucleotide biosynthetic process from tryptophan (GO:0019356)
• positive regulation of tryptophan metabolic process (GO:0090358)
  • positive regulation of 'de novo' NAD biosynthetic process from tryptophan (GO:1905014)
• regulation of tryptophan metabolic process (GO:0090357)
  • positive regulation of tryptophan metabolic process (GO:0090358)
    • positive regulation of 'de novo' NAD biosynthetic process from tryptophan (GO:1905014)
  • regulation of 'de novo' NAD biosynthetic process from tryptophan (GO:1905012)
    [5 PDB entries]
    
    
  • regulation of indoleacetic acid biosynthetic process via tryptophan (GO:1901996)
• serotonin biosynthetic process from tryptophan (GO:0006587)
  [1 PDB entries]
  
  
• activation of tryptophan 5-monooxygenase activity (GO:0006588)
• tryptophan biosynthetic process (GO:0000162)
  [227 PDB entries]
  
  
• tryptophan catabolic process (GO:0006569)
  [112 PDB entries]
  
  
• tryptophan catabolic process to acetyl-CoA (GO:0019442)
  [12 PDB entries]
  
  
• tryptophan catabolic process to catechol (GO:0019444)
• tryptophan catabolic process to indole-3-acetate (GO:0019440)
• tryptophan catabolic process to kynurenine (GO:0019441)
  [51 PDB entries]
  
  
• tyrosine metabolic process (GO:0006570)
  [16 PDB entries]
  
  
• D-tyrosine metabolic process (GO:1900828)
  • D-tyrosine biosynthetic process (GO:1900830)
  • D-tyrosine catabolic process (GO:1900829)
• dopamine biosynthetic process from tyrosine (GO:0006585)
  [6 PDB entries]
  
  
• melanin biosynthetic process from tyrosine (GO:0006583)
  [2 PDB entries]
  
  
• tyrosine biosynthetic process (GO:0006571)
  [53 PDB entries]
  
  
• D-tyrosine biosynthetic process (GO:1900830)
• tyrosine biosynthetic process from chorismate via 4-hydroxyphenylpyruvate (GO:0019292)
  [2 PDB entries]
  
  
• tyrosine biosynthetic process from chorismate via L-arogenate (GO:0033584)
• tyrosine biosynthetic process, by oxidation of phenylalanine (GO:0019293)
• tyrosine catabolic process (GO:0006572)
  [33 PDB entries]
  
  
• D-tyrosine catabolic process (GO:1900829)
• tyrosine catabolic process to fumarate (GO:0019445)
• ubiquinone biosynthetic process from tyrosine (GO:0032180)
• valine metabolic process (GO:0006573)
  [8 PDB entries]
  
  
• D-valine metabolic process (GO:1902114)
  • D-valine catabolic process (GO:1902079)
• pantothenate biosynthetic process from valine (GO:0033317)
  [7 PDB entries]
  
  
• valine biosynthetic process (GO:0009099)
  [54 PDB entries]
  
  
• valine catabolic process (GO:0006574)
  [9 PDB entries]
  
  
• D-valine catabolic process (GO:1902079)
• valine catabolic process to isobutanol (GO:1902697)

Click on the GO accession number to get a tree view of the GO hierarchy without information on PDB entries. In this case your query level and all levels of higher hierarchy up to the root level Gene_Ontology (GO:0003673) are displayed.

If you enter the GO tree somewhere and if you want to get a view of the whole tree first click on the GO name. This yields the low-hierarchy part. Then click on the GO accession number of the lowest hierarchical level. This gives a view of the complete tree. Note, that certain GO terms belong to more than one path.

GO2PDB@JenaLib
Tue Jul 9 10:48:17 2019