GO2PDB - JenaLib

Search term(s): GO:0097458

Here you see a subgraph of the complete GO graph, with your query GO:0097458 as the highest hiearchical level and all levels of lower hierarchy. The number of PDB entries, for which a UniProt entry annotated with the corresponding GO term is available, is shown in square brackets for all hiearchical levels of the subgraph.

neuron part (GO:0097458)
- actin filament bundle of stereocilium (GO:0098860)
- apical pole of neuron (GO:0044225)
- axon part (GO:0033267)
  - axolemma (GO:0030673)
    [45 PDB entries]
  - axon collateral (GO:0044303)
    - recurrent axon collateral (GO:1990020)
    - Schaffer axon collateral (GO:1990021)
  - axon cytoplasm (GO:1904115)
    [170 PDB entries]
  - axon hillock (GO:0043203)
    [125 PDB entries]
  - axon initial segment (GO:0043194)
    [21 PDB entries]
  - axon microtubule bundle (GO:1901589)
  - axon terminus (GO:0043679)
    [263 PDB entries]
  - axonal spine (GO:0044308)
    [4 PDB entries]
  - distal axon (GO:0150034)
    - axon terminus (GO:0043679)
      [263 PDB entries]
    - growth cone (GO:0030426)
      [1148 PDB entries]
  - growth cone (GO:0030426)
    [1148 PDB entries]
  - growth cone leading edge (GO:0061850)
    - leading edge of axonal growth cone (GO:0061916)
    - leading edge of dendritic growth cone (GO:0061917)
  - growth cone part (GO:0090723)
    - central region of growth cone (GO:0090724)
    - growth cone filopodium (GO:1990812)
      [153 PDB entries]
    - growth cone lamellipodium (GO:1990761)
      [145 PDB entries]
    - growth cone membrane (GO:0032584)
      [15 PDB entries]
    - peripheral region of growth cone (GO:0090725)
  - internode region of axon (GO:0033269)
    [19 PDB entries]
  - juxtaparanode region of axon (GO:0044224)
    [86 PDB entries]
  - main axon (GO:0044304)
    [151 PDB entries]
  - node of Ranvier (GO:0033268)
    [59 PDB entries]
  - paranode region of axon (GO:0033270)
    [52 PDB entries]
  - pericellular basket (GO:1990030)
  - pinceau fiber (GO:1990031)
    [13 PDB entries]
  - subsynaptic reticulum (GO:0071212)
    [4 PDB entries]
  - synaptic vesicle, readily releasable pool (GO:1990474)
  - synaptic vesicle, resting pool (GO:1990476)
  - terminal bouton (GO:0043195)
    [1027 PDB entries]
  - varicosity (GO:0043196)
    [25 PDB entries]
- basal pole of neuron (GO:0044226)
- bBAF complex (GO:0140092)
- clathrin coat of synaptic vesicle (GO:0030129)
- cuticular plate (GO:0032437)
  [8 PDB entries]
- cytoplasmic side of dendritic spine plasma membrane (GO:1990780)
  [3 PDB entries]
- cytoskeleton of dendritic spine (GO:0098836)
  - actin cytoskeleton of dendritic spine (GO:0098938)
- dendrite terminus (GO:0044292)
  [1 PDB entries]
- dendritic lamellar body (GO:1990503)
- dendritic microtubule (GO:1901588)
  [2 PDB entries]
- dendritic shaft (GO:0043198)
  [582 PDB entries]
- dendritic spine head (GO:0044327)
  [18 PDB entries]
- dendritic spine neck (GO:0044326)
  [13 PDB entries]
- dendritic spine origin (GO:0150004)
- extrinsic component of neuronal dense core vesicle membrane (GO:0098674)
- extrinsic component of postsynaptic density membrane (GO:0099147)
- extrinsic component of presynaptic endosome membrane (GO:0099007)
- extrinsic component of presynaptic membrane (GO:0098888)
  - extrinsic component of presynaptic active zone membrane (GO:0098891)
  - extrinsic component of presynaptic endocytic zone membrane (GO:0098894)
- extrinsic component of spine apparatus membrane (GO:0098929)
- extrinsic component of synaptic vesicle membrane (GO:0098850)
- intrinsic component of neuronal dense core vesicle membrane (GO:0098675)
  - anchored component of neuronal dense core vesicle membrane (GO:0099036)
  - integral component of neuronal dense core vesicle membrane (GO:0099066)
- intrinsic component of postsynaptic density membrane (GO:0099146)
  - anchored component of postsynaptic density membrane (GO:0099031)
  - integral component of postsynaptic density membrane (GO:0099061)
- intrinsic component of presynaptic endosome membrane (GO:0098955)
  - anchored component of presynaptic endosome membrane (GO:0099037)
  - integral component of presynaptic endosome membrane (GO:0099067)
- intrinsic component of presynaptic membrane (GO:0098889)
  - anchored component of presynaptic membrane (GO:0099026)
    - anchored component of presynaptic active zone membrane (GO:0099029)
    - anchored component of presynaptic endocytic zone membrane (GO:0099027)
  - integral component of presynaptic membrane (GO:0099056)
    - integral component of presynaptic active zone membrane (GO:0099059)
    - integral component of presynaptic endocytic zone membrane (GO:0099057)
  - intrinsic component of presynaptic active zone membrane (GO:0098945)
    - anchored component of presynaptic active zone membrane (GO:0099029)
    - integral component of presynaptic active zone membrane (GO:0099059)
  - intrinsic component of presynaptic endocytic zone membrane (GO:0098946)
    - anchored component of presynaptic endocytic zone membrane (GO:0099027)
    - integral component of presynaptic endocytic zone membrane (GO:0099057)
- intrinsic component of spine apparatus membrane (GO:0098952)
  - anchored component of spine apparatus membrane (GO:0099035)
  - integral component of spine apparatus membrane (GO:0099065)
- intrinsic component of synaptic vesicle membrane (GO:0098563)
  - anchored component of synaptic vesicle membrane (GO:0098993)
  - integral component of synaptic vesicle membrane (GO:0030285)
- kinociliary basal body (GO:1902636)
- Lewy body (GO:0097413)
  [12 PDB entries]
- Lewy body core (GO:1990037)
  [2 PDB entries]
- Lewy body corona (GO:1990038)
- Lewy body-like hyaline inclusion (GO:0097416)
- nBAF complex (GO:0071565)
  [23 PDB entries]
- neurofibrillary tangle (GO:0097418)
  [26 PDB entries]
- neurofilament cytoskeleton (GO:0060053)
  [2 PDB entries]
- neuron projection (GO:0043005)
  [3194 PDB entries]
- neuron projection branch point (GO:0061845)
  - dendritic branch point (GO:1990033)
- neuron projection cytoplasm (GO:0120111)
  - axon cytoplasm (GO:1904115)
    [170 PDB entries]
  - dendrite cytoplasm (GO:0032839)
    [543 PDB entries]
  - neuronal ribonucleoprotein granule (GO:0071598)
    [32 PDB entries]
- neuron projection membrane (GO:0032589)
  [4 PDB entries]
- neuron projection terminus (GO:0044306)
  [114 PDB entries]
- neuronal cell body (GO:0043025)
  [3031 PDB entries]
- neuronal cell body membrane (GO:0032809)
  [54 PDB entries]
- neuronal dense core vesicle (GO:0098992)
  - neuronal dense core vesicle lumen (GO:0099013)
  - neuronal dense core vesicle membrane (GO:0099012)
    - extrinsic component of neuronal dense core vesicle membrane (GO:0098674)
    - intrinsic component of neuronal dense core vesicle membrane (GO:0098675)
      - anchored component of neuronal dense core vesicle membrane (GO:0099036)
      - integral component of neuronal dense core vesicle membrane (GO:0099066)
- neuronal dense core vesicle lumen (GO:0099013)
- neuronal dense core vesicle membrane (GO:0099012)
  - extrinsic component of neuronal dense core vesicle membrane (GO:0098674)
  - intrinsic component of neuronal dense core vesicle membrane (GO:0098675)
    - anchored component of neuronal dense core vesicle membrane (GO:0099036)
    - integral component of neuronal dense core vesicle membrane (GO:0099066)
- neuronal ribonucleoprotein granule (GO:0071598)
  [32 PDB entries]
- npBAF complex (GO:0071564)
  [16 PDB entries]
- perikaryon (GO:0043204)
  [1513 PDB entries]
- photoreceptor connecting cilium (GO:0032391)
  [46 PDB entries]
- photoreceptor disc membrane (GO:0097381)
  [111 PDB entries]
- photoreceptor inner segment (GO:0001917)
  [408 PDB entries]
- photoreceptor inner segment membrane (GO:0060342)
  [51 PDB entries]
- photoreceptor outer segment (GO:0001750)
  [180 PDB entries]
- photoreceptor outer segment membrane (GO:0042622)
  [82 PDB entries]
- postsynaptic density (GO:0014069)
  [1538 PDB entries]
- postsynaptic density membrane (GO:0098839)
  - extrinsic component of postsynaptic density membrane (GO:0099147)
  - intrinsic component of postsynaptic density membrane (GO:0099146)
    - anchored component of postsynaptic density membrane (GO:0099031)
    - integral component of postsynaptic density membrane (GO:0099061)
- postsynaptic density, intracellular component (GO:0099092)
- presynapse (GO:0098793)
  [211 PDB entries]
- presynaptic active zone (GO:0048786)
  [317 PDB entries]
- presynaptic active zone cytoplasmic component (GO:0098831)
  - cytoskeleton of presynaptic active zone (GO:0048788)
    [2 PDB entries]
- presynaptic active zone dense projection (GO:0097445)
- presynaptic active zone membrane (GO:0048787)
  - extrinsic component of presynaptic active zone membrane (GO:0098891)
  - intrinsic component of presynaptic active zone membrane (GO:0098945)
    - anchored component of presynaptic active zone membrane (GO:0099029)
    - integral component of presynaptic active zone membrane (GO:0099059)
- presynaptic cytoskeleton (GO:0099569)
  - cytoskeleton of presynaptic active zone (GO:0048788)
    [2 PDB entries]
  - presynaptic actin cytoskeleton (GO:0099143)
  - presynaptic intermediate filament cytoskeleton (GO:0099182)
- presynaptic cytosol (GO:0099523)
- presynaptic endocytic zone (GO:0098833)
  - presynaptic endocytic zone cytoplasmic component (GO:0098834)
  - presynaptic endocytic zone membrane (GO:0098835)
    - extrinsic component of presynaptic endocytic zone membrane (GO:0098894)
    - intrinsic component of presynaptic endocytic zone membrane (GO:0098946)
      - anchored component of presynaptic endocytic zone membrane (GO:0099027)
      - integral component of presynaptic endocytic zone membrane (GO:0099057)
- presynaptic endocytic zone cytoplasmic component (GO:0098834)
- presynaptic endocytic zone membrane (GO:0098835)
  - extrinsic component of presynaptic endocytic zone membrane (GO:0098894)
  - intrinsic component of presynaptic endocytic zone membrane (GO:0098946)
    - anchored component of presynaptic endocytic zone membrane (GO:0099027)
    - integral component of presynaptic endocytic zone membrane (GO:0099057)
- presynaptic endosome (GO:0098830)
  - presynaptic endosome membrane (GO:0098954)
    - extrinsic component of presynaptic endosome membrane (GO:0099007)
    - intrinsic component of presynaptic endosome membrane (GO:0098955)
      - anchored component of presynaptic endosome membrane (GO:0099037)
      - integral component of presynaptic endosome membrane (GO:0099067)
- presynaptic endosome membrane (GO:0098954)
  - extrinsic component of presynaptic endosome membrane (GO:0099007)
  - intrinsic component of presynaptic endosome membrane (GO:0098955)
    - anchored component of presynaptic endosome membrane (GO:0099037)
    - integral component of presynaptic endosome membrane (GO:0099067)
- presynaptic grid (GO:1990013)
- presynaptic membrane (GO:0042734)
  [525 PDB entries]
- presynaptic periactive zone (GO:0036062)
- proximal dendrite (GO:1990635)
  [24 PDB entries]
- somatodendritic compartment (GO:0036477)
  [25 PDB entries]
- spine apparatus (GO:0097444)
  - spine apparatus lumen (GO:0098899)
  - spine apparatus membrane (GO:0098897)
    - extrinsic component of spine apparatus membrane (GO:0098929)
    - intrinsic component of spine apparatus membrane (GO:0098952)
      - anchored component of spine apparatus membrane (GO:0099035)
      - integral component of spine apparatus membrane (GO:0099065)
- spine apparatus lumen (GO:0098899)
- spine apparatus membrane (GO:0098897)
  - extrinsic component of spine apparatus membrane (GO:0098929)
  - intrinsic component of spine apparatus membrane (GO:0098952)
    - anchored component of spine apparatus membrane (GO:0099035)
    - integral component of spine apparatus membrane (GO:0099065)
- spine mat (GO:0097448)
- stereocilia ankle link complex (GO:0002142)
- stereocilia coupling link (GO:0002139)
  - stereocilia ankle link (GO:0002141)
    [1 PDB entries]
  - stereocilia tip link (GO:0002140)
    - stereocilia tip-link density (GO:1990427)
      - lower tip-link density (GO:1990434)
      - upper tip-link density (GO:1990435)
        [5 PDB entries]
- stereocilia tip-link density (GO:1990427)
  - lower tip-link density (GO:1990434)
  - upper tip-link density (GO:1990435)
    [5 PDB entries]
- stereocilium base (GO:0120044)
- stereocilium bundle (GO:0032421)
  [21 PDB entries]
- stereocilium shaft (GO:0120043)
- stereocilium tip (GO:0032426)
  [33 PDB entries]
- subplasmalemmal coating (GO:0044280)
- synaptic vesicle (GO:0008021)
  [450 PDB entries]
- synaptic vesicle lumen (GO:0034592)
- synaptic vesicle membrane (GO:0030672)
  [405 PDB entries]

Click on the GO accession number to get a tree view of the GO hierarchy without information on PDB entries. In this case your query level and all levels of higher hierarchy up to the root level Gene_Ontology (GO:0003673) are displayed.

If you enter the GO tree somewhere and if you want to get a view of the whole tree first click on the GO name. This yields the low-hierarchy part. Then click on the GO accession number of the lowest hierarchical level. This gives a view of the complete tree. Note, that certain GO terms belong to more than one path.

GO2PDB@JenaLib
Tue Jul 9 10:48:17 2019