Search term(s): GO:0090407
Here you see a subgraph of the complete GO graph, with your query GO:0090407 as the highest hiearchical level and all levels of lower hierarchy. The number of PDB entries, for which a UniProt entry annotated with the corresponding GO term is available, is shown in square brackets for all hiearchical levels of the subgraph.
1-deoxy-D-xylulose 5-phosphate biosynthetic process (
GO:0052865)
7,8-dihydroneopterin 3'-triphosphate biosynthetic process (
GO:0035998)
carbamoyl phosphate biosynthetic process (
GO:0070409)
coenzyme gamma-F420-2 biosynthetic process (
GO:2001121)
cyclic 2,3-bisphospho-D-glycerate biosynthetic process (
GO:1901369)
D-glycero-D-manno-heptose 7-phosphate biosynthetic process (
GO:2001061)
deoxyribose phosphate biosynthetic process (
GO:0046385)
2'-deoxyribonucleotide biosynthetic process (
GO:0009265)
purine deoxyribonucleotide biosynthetic process (
GO:0009153)
pyrimidine deoxyribonucleotide biosynthetic process (
GO:0009221)
2-deoxyribose 1-phosphate biosynthetic process (
GO:0006016)
deoxyribose 1,5-bisphosphate biosynthetic process (
GO:0006017)
glyceraldehyde-3-phosphate biosynthetic process (
GO:0046166)
glycerol-3-phosphate biosynthetic process (
GO:0046167)
inositol phosphate biosynthetic process (
GO:0032958)
methanopterin-containing compound biosynthetic process (
GO:2001116)
negative regulation of sarcinapterin biosynthetic process (
GO:1900972)
positive regulation of sarcinapterin biosynthetic process (
GO:1900973)
regulation of sarcinapterin biosynthetic process (
GO:1900971)
tetrahydromethanopterin biosynthetic process (
GO:2001118)
5,6,7,8-tetrahydromethanopterin biosynthetic process (
GO:1901285)
5,6,7,8-tetrahydrosarcinapterin biosynthetic process (
GO:1901855)
Mo-molybdopterin cofactor biosynthetic process (
GO:0006777)
bis(molybdopterin guanine dinucleotide)molybdenum biosynthetic process (
GO:1902758)
Mo(VI)-molybdopterin cytosine dinucleotide biosynthetic process (
GO:1902760)
sulfurated eukaryotic molybdenum cofactor(2-) biosynthetic process (
GO:1902756)
molybdopterin cofactor biosynthetic process (
GO:0032324)
nucleoside phosphate biosynthetic process (
GO:1901293)
nucleoside bisphosphate biosynthetic process (
GO:0033866)
purine nucleoside bisphosphate biosynthetic process (
GO:0034033)
ribonucleoside bisphosphate biosynthetic process (
GO:0034030)
nucleoside diphosphate biosynthetic process (
GO:0009133)
deoxyribonucleoside diphosphate biosynthetic process (
GO:0009189)
purine nucleoside diphosphate biosynthetic process (
GO:0009136)
pyrimidine nucleoside diphosphate biosynthetic process (
GO:0009139)
ribonucleoside diphosphate biosynthetic process (
GO:0009188)
nucleoside monophosphate biosynthetic process (
GO:0009124)
nucleoside triphosphate biosynthetic process (
GO:0009142)
deoxyribonucleoside triphosphate biosynthetic process (
GO:0009202)
purine nucleoside triphosphate biosynthetic process (
GO:0009145)
pyrimidine nucleoside triphosphate biosynthetic process (
GO:0009148)
ribonucleoside triphosphate biosynthetic process (
GO:0009201)
- [857 PDB entries]
O3-(N-acetylglucosamine-1-phosphoryl)-L-serine biosynthetic process (
GO:0018425)
organic phosphonate biosynthetic process (
GO:0032923)
-
- [194 PDB entries]
4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate biosynthetic process (
GO:0036108)
5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate biosynthetic process (
GO:1901949)
beta-L-Ara4N-lipid A biosynthetic process (
GO:1901760)
ceramide phosphoethanolamine biosynthetic process (
GO:1905373)
copal-8-ol diphosphate(3-) biosynthetic process (
GO:1902243)
dimethylallyl diphosphate biosynthetic process (
GO:0050992)
dolichyl diphosphate biosynthetic process (
GO:0006489)
dolichyl monophosphate biosynthetic process (
GO:0043048)
farnesyl diphosphate biosynthetic process (
GO:0045337)
farnesyl diphosphate biosynthetic process, mevalonate pathway (
GO:0010142)
GDP-alpha-D-mannosylchitobiosyldiphosphodolichol biosynthetic process (
GO:0019347)
geranyl diphosphate biosynthetic process (
GO:0033384)
geranylgeranyl diphosphate biosynthetic process (
GO:0033386)
glycerophospholipid biosynthetic process (
GO:0046474)
isopentenyl diphosphate biosynthetic process (
GO:0009240)
-
- [195 PDB entries]
mannosyl-inositol phosphorylceramide biosynthetic process (
GO:0051999)
negative regulation of phospholipid biosynthetic process (
GO:0071072)
negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (
GO:0010323)
negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway (
GO:2001211)
negative regulation of phosphatidate phosphatase activity (
GO:1903741)
negative regulation of phosphatidic acid biosynthetic process (
GO:1905694)
negative regulation of phosphatidylcholine biosynthetic process (
GO:2001246)
negative regulation of phosphatidylglycerol biosynthetic process (
GO:1901352)
negative regulation of phosphatidylinositol biosynthetic process (
GO:0010512)
negative regulation of phosphatidylserine biosynthetic process (
GO:1900469)
phytyl diphosphate biosynthetic process (
GO:0033521)
positive regulation of phospholipid biosynthetic process (
GO:0071073)
positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway (
GO:1900486)
positive regulation of phosphatidate phosphatase activity (
GO:1903740)
positive regulation of phosphatidic acid biosynthetic process (
GO:1905695)
positive regulation of phosphatidylcholine biosynthetic process (
GO:2001247)
positive regulation of phosphatidylglycerol biosynthetic process (
GO:1901353)
positive regulation of phosphatidylinositol biosynthetic process (
GO:0010513)
positive regulation of phosphatidylserine biosynthetic process (
GO:1900470)
positive regulation of phospholipid biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (
GO:1900413)
positive regulation of phospholipid biosynthetic process by transcription from RNA polymerase II promoter (
GO:0100032)
regulation of phospholipid biosynthetic process (
GO:0071071)
negative regulation of phospholipid biosynthetic process (
GO:0071072)
negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (
GO:0010323)
negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway (
GO:2001211)
negative regulation of phosphatidate phosphatase activity (
GO:1903741)
negative regulation of phosphatidic acid biosynthetic process (
GO:1905694)
negative regulation of phosphatidylcholine biosynthetic process (
GO:2001246)
negative regulation of phosphatidylglycerol biosynthetic process (
GO:1901352)
negative regulation of phosphatidylinositol biosynthetic process (
GO:0010512)
negative regulation of phosphatidylserine biosynthetic process (
GO:1900469)
positive regulation of phospholipid biosynthetic process (
GO:0071073)
positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway (
GO:1900486)
positive regulation of phosphatidate phosphatase activity (
GO:1903740)
positive regulation of phosphatidic acid biosynthetic process (
GO:1905695)
positive regulation of phosphatidylcholine biosynthetic process (
GO:2001247)
positive regulation of phosphatidylglycerol biosynthetic process (
GO:1901353)
positive regulation of phosphatidylinositol biosynthetic process (
GO:0010513)
positive regulation of phosphatidylserine biosynthetic process (
GO:1900470)
positive regulation of phospholipid biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (
GO:1900413)
positive regulation of phospholipid biosynthetic process by transcription from RNA polymerase II promoter (
GO:0100032)
regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (
GO:0010322)
regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway (
GO:2001210)
regulation of phosphatidate phosphatase activity (
GO:1903730)
regulation of phosphatidic acid biosynthetic process (
GO:1905693)
regulation of phosphatidylcholine biosynthetic process (
GO:2001245)
regulation of phosphatidylglycerol biosynthetic process (
GO:1901351)
regulation of phosphatidylinositol biosynthetic process (
GO:0010511)
regulation of phosphatidylserine biosynthetic process (
GO:1900468)
sphinganine-1-phosphate biosynthetic process (
GO:0006669)
- [1 PDB entries]
pyridoxal phosphate biosynthetic process (
GO:0042823)
ribose phosphate biosynthetic process (
GO:0046390)
thiamine diphosphate biosynthetic process (
GO:0009229)
negative regulation of thiamine diphosphate biosynthetic process (
GO:0070617)
regulation of thiamine diphosphate biosynthetic process (
GO:0070616)
negative regulation of thiamine diphosphate biosynthetic process (
GO:0070617)
W-molybdopterin cofactor biosynthetic process (
GO:0042047)
xylulose 5-phosphate biosynthetic process (
GO:1901159)
D-arabinose catabolic process to xylulose 5-phosphate (
GO:0019573)
D-arabitol catabolic process to xylulose 5-phosphate (
GO:0019528)
glucuronate catabolic process to xylulose 5-phosphate (
GO:0019640)
L-arabinose catabolic process to xylulose 5-phosphate (
GO:0019569)
L-arabitol catabolic process to xylulose 5-phosphate (
GO:0019590)
L-xylitol catabolic process to xylulose 5-phosphate (
GO:0019697)
ribitol catabolic process to xylulose 5-phosphate (
GO:0019488)
Click on the GO accession number to get a tree view of the GO hierarchy without information on PDB entries. In this case your query level and all levels of higher hierarchy up to the root level Gene_Ontology (GO:0003673) are displayed.
If you enter the GO tree somewhere and if you want to get a view of the whole tree first click on the GO name. This yields the low-hierarchy part. Then click on the GO accession number of the lowest hierarchical level. This gives a view of the complete tree. Note, that certain GO terms belong to more than one path.
GO2PDB@JenaLib
Tue Jul 9 10:48:17 2019
