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   Search term(s): GO:0045488

Here you see a subgraph of the complete GO graph, with your query GO:0045488 as the highest hiearchical level and all levels of lower hierarchy. The number of PDB entries, for which a UniProt entry annotated with the corresponding GO term is available, is shown in square brackets for all hiearchical levels of the subgraph.

• pectin metabolic process (GO:0045488)
  • cell wall pectin metabolic process (GO:0052546)
    • cell wall pectin biosynthetic process (GO:0052325)
      • homogalacturonan biosynthetic process (GO:0010289)
      • rhamnogalacturonan II biosynthetic process (GO:0010306)
    • metabolism by organism of cell wall pectin in other organism involved in symbiotic interaction (GO:0052413)
      • catabolism by organism of cell wall pectin in other organism involved in symbiotic interaction (GO:0052341)
      • metabolism by host of symbiont cell wall pectin (GO:0052412)
      • metabolism by symbiont of host cell wall pectin (GO:0052179)
    • regulation of cell wall pectin metabolic process (GO:1902066)
    • rhamnogalacturonan I metabolic process (GO:0010395)
      • rhamnogalacturonan I backbone metabolic process (GO:0010399)
      • rhamnogalacturonan I biosynthetic process (GO:0010246)
      • rhamnogalacturonan I side chain metabolic process (GO:0010400)
        [1 PDB entries]
        
        
  • mucilage pectin metabolic process (GO:0048363)
    • mucilage pectin biosynthetic process (GO:0048358)
  • pectin biosynthetic process (GO:0045489)
    • cell wall pectin biosynthetic process (GO:0052325)
      • homogalacturonan biosynthetic process (GO:0010289)
      • rhamnogalacturonan II biosynthetic process (GO:0010306)
    • mucilage pectin biosynthetic process (GO:0048358)
    • regulation of pectin biosynthetic process (GO:1900030)
  • pectin catabolic process (GO:0045490)
    [69 PDB entries]
    
    
  • anaerobic pectin catabolic process (GO:1990489)
  • negative regulation of pectin catabolic process (GO:2001004)
  • positive regulation of pectin catabolic process (GO:2001005)
  • regulation of pectin catabolic process (GO:2001003)
    • negative regulation of pectin catabolic process (GO:2001004)
    • positive regulation of pectin catabolic process (GO:2001005)

Click on the GO accession number to get a tree view of the GO hierarchy without information on PDB entries. In this case your query level and all levels of higher hierarchy up to the root level Gene_Ontology (GO:0003673) are displayed.

If you enter the GO tree somewhere and if you want to get a view of the whole tree first click on the GO name. This yields the low-hierarchy part. Then click on the GO accession number of the lowest hierarchical level. This gives a view of the complete tree. Note, that certain GO terms belong to more than one path.

GO2PDB@JenaLib
Tue Jul 9 10:48:17 2019