GO2PDB - JenaLib

Search term(s): GO:0044425

Here you see a subgraph of the complete GO graph, with your query GO:0044425 as the highest hiearchical level and all levels of lower hierarchy. The number of PDB entries, for which a UniProt entry annotated with the corresponding GO term is available, is shown in square brackets for all hiearchical levels of the subgraph.

membrane part (GO:0044425)
- clathrin-coated pit (GO:0005905)
  [415 PDB entries]
- endoplasmic reticulum membrane (GO:0005789)
  [3159 PDB entries]
- extrinsic component of membrane (GO:0019898)
  [348 PDB entries]
- intrinsic component of membrane (GO:0031224)
  [42 PDB entries]
- leaflet of membrane bilayer (GO:0097478)
- membrane protein complex (GO:0098796)
  - 5-lipoxygenase complex (GO:0002180)
  - alpha-1,6-mannosyltransferase complex (GO:0000136)
    [1 PDB entries]
  - AP-type membrane coat adaptor complex (GO:0030119)
    [5 PDB entries]
  - Asi complex (GO:0097658)
  - Bam protein complex (GO:1990063)
    [30 PDB entries]
  - chaperone-mediated autophagy translocation complex (GO:0061742)
    [2 PDB entries]
  - chloroplast outer membrane translocon (GO:0010278)
  - chloroplast thylakoid membrane protein complex (GO:0098807)
    - chloroplast ATP synthase complex (GO:0009544)
    - chloroplast photosystem I (GO:0030093)
      [1 PDB entries]
    - chloroplast photosystem II (GO:0030095)
    - chloroplast proton-transporting ATP synthase complex (GO:0045320)
    - chloroplast proton-transporting ATP synthase complex, catalytic core CF(1) (GO:0033174)
    - chloroplast proton-transporting ATP synthase complex, coupling factor CF(o) (GO:0033175)
    - PSII associated light-harvesting complex II, core complex (GO:0009655)
    - PSII associated light-harvesting complex II, peripheral complex (GO:0009656)
    - PSII associated light-harvesting complex II, peripheral complex, LHCIIb subcomplex (GO:0030085)
    - thylakoid light-harvesting complex (GO:0009503)
  - chromosome segregation-directing complex (GO:0043913)
  - clathrin complex (GO:0071439)
    [7 PDB entries]
  - COPII vesicles tethering complex (GO:0106103)
  - cytochrome o ubiquinol oxidase complex (GO:0009319)
    [3 PDB entries]
  - Derlin-1 retrotranslocation complex (GO:0036513)
    [55 PDB entries]
  - Derlin-1-VIMP complex (GO:0036502)
    [2 PDB entries]
  - dolichyl-phosphate-mannose-protein mannosyltransferase complex (GO:0031502)
    [2 PDB entries]
  - Dsc E3 ubiquitin ligase complex (GO:0044695)
  - EGO complex (GO:0034448)
    [9 PDB entries]
  - endoplasmic reticulum palmitoyltransferase complex (GO:0031211)
    - serine C-palmitoyltransferase complex (GO:0017059)
  - endoplasmic reticulum Sec complex (GO:0031205)
    [35 PDB entries]
  - endosomal scaffold complex (GO:0032969)
  - ER membrane protein complex (GO:0072546)
    [5 PDB entries]
  - ER ubiquitin ligase complex (GO:0000835)
    - CUE1-UBC7 ubiquitin-conjugating enzyme complex (GO:1990389)
    - Doa10p ubiquitin ligase complex (GO:0000837)
      [5 PDB entries]
    - Hrd1p ubiquitin ligase complex (GO:0000836)
      [1 PDB entries]
  - ESCRT I complex (GO:0000813)
    [30 PDB entries]
  - ESCRT II complex (GO:0000814)
    [10 PDB entries]
  - ESCRT III complex (GO:0000815)
    [26 PDB entries]
  - ESCRT IV complex (GO:1990621)
    [15 PDB entries]
  - fatty acid elongase complex (GO:0009923)
  - glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex (GO:0000506)
  - GPI-anchor transamidase complex (GO:0042765)
  - H-gal-GP complex (GO:1990850)
  - HOPS complex (GO:0030897)
    [6 PDB entries]
  - inner mitochondrial membrane protein complex (GO:0098800)
    - heterotetrameric decaprenyl diphosphate synthase complex (GO:0032478)
    - i-AAA complex (GO:0031942)
      [1 PDB entries]
    - INA complex (GO:1990524)
    - m-AAA complex (GO:0005745)
    - MICOS complex (GO:0061617)
    - mitochondrial inner membrane assembly complex (GO:1990677)
    - mitochondrial inner membrane peptidase complex (GO:0042720)
    - mitochondrial prohibitin complex (GO:0035632)
    - mitochondrial proton-transporting ATP synthase complex (GO:0005753)
      [91 PDB entries]
    - mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) (GO:0000275)
      [34 PDB entries]
    - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) (GO:0000276)
      [26 PDB entries]
    - mitochondrial proton-transporting ATP synthase, catalytic core (GO:0005754)
      [12 PDB entries]
    - mitochondrial proton-transporting ATP synthase, central stalk (GO:0005756)
      [14 PDB entries]
    - mitochondrial proton-transporting ATP synthase, stator stalk (GO:0000274)
      [3 PDB entries]
    - mitochondrial respiratory chain complex I (GO:0005747)
      [78 PDB entries]
    - mitochondrial respiratory chain complex I, membrane segment (GO:0042653)
    - mitochondrial respiratory chain complex I, peripheral segment (GO:0042652)
    - mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) (GO:0005749)
      [43 PDB entries]
    - mitochondrial respiratory chain complex III (GO:0005750)
      [58 PDB entries]
    - mitochondrial respiratory chain complex IV (GO:0005751)
      [44 PDB entries]
    - mitochondrial respiratory chain complex IV pre-assembly complex (GO:0062011)
    - mitochondrial respiratory chain supercomplex (GO:0097249)
      [4 PDB entries]
    - PAM complex, Tim23 associated import motor (GO:0001405)
      [3 PDB entries]
    - TIM22 mitochondrial import inner membrane insertion complex (GO:0042721)
      [4 PDB entries]
    - TIM23 mitochondrial import inner membrane translocase complex (GO:0005744)
      [7 PDB entries]
    - uniplex complex (GO:1990246)
      [10 PDB entries]
  - Ire1 complex (GO:1990332)
    [9 PDB entries]
  - IRE1-TRAF2-ASK1 complex (GO:1990604)
    [40 PDB entries]
  - lipopolysaccharide receptor complex (GO:0046696)
    [26 PDB entries]
  - membrane coat (GO:0030117)
    [110 PDB entries]
  - meprin A complex (GO:0017090)
  - MHC class I peptide loading complex (GO:0042824)
    [14 PDB entries]
  - NAD(P)H dehydrogenase complex (plastoquinone) (GO:0010598)
  - NADH dehydrogenase complex (GO:0030964)
    [1 PDB entries]
  - Nem1-Spo7 phosphatase complex (GO:0071595)
  - nuclear membrane complex Bqt3-Bqt4 (GO:1990862)
  - nuclear membrane protein complex (GO:0106083)
    - nuclear membrane microtubule tethering complex (GO:0106094)
    - nuclear membrane mitotic spindle pole body tethering complex (GO:0106084)
  - oligosaccharyltransferase complex (GO:0008250)
    [12 PDB entries]
  - outer mitochondrial membrane protein complex (GO:0098799)
    - Cdc48p-Npl4p-Vms1p AAA ATPase complex (GO:0036266)
    - ERMES complex (GO:0032865)
      [3 PDB entries]
    - mitochondrial outer membrane translocase complex (GO:0005742)
      [14 PDB entries]
    - mitochondrial sorting and assembly machinery complex (GO:0001401)
  - phosphatidylinositol 3-kinase complex (GO:0005942)
    [248 PDB entries]
  - phospholamban complex (GO:1990629)
  - photosystem (GO:0009521)
    [38 PDB entries]
  - photosystem I antenna complex (GO:0009782)
  - photosystem I reaction center (GO:0009538)
    [22 PDB entries]
  - photosystem II antenna complex (GO:0009783)
    [1 PDB entries]
  - photosystem II oxygen evolving complex (GO:0009654)
    [51 PDB entries]
  - photosystem II reaction center (GO:0009539)
    [38 PDB entries]
  - phycobilisome (GO:0030089)
    [109 PDB entries]
  - plasma membrane protein complex (GO:0098797)
    [16 PDB entries]
  - pore complex (GO:0046930)
    [238 PDB entries]
  - pre-B cell receptor complex (GO:0035369)
  - protein C inhibitor-acrosin complex (GO:0033282)
  - proton-transporting ATP synthase, catalytic core (GO:0045267)
    - mitochondrial proton-transporting ATP synthase, catalytic core (GO:0005754)
      [12 PDB entries]
    - plasma membrane proton-transporting ATP synthase, catalytic core (GO:0045268)
  - proton-transporting ATP synthase, central stalk (GO:0045269)
    - mitochondrial proton-transporting ATP synthase, central stalk (GO:0005756)
      [14 PDB entries]
    - plasma membrane proton-transporting ATP synthase, central stalk (GO:0045270)
  - proton-transporting ATP synthase, stator stalk (GO:0045265)
    - mitochondrial proton-transporting ATP synthase, stator stalk (GO:0000274)
      [3 PDB entries]
    - plasma membrane proton-transporting ATP synthase, stator stalk (GO:0045266)
  - proton-transporting two-sector ATPase complex (GO:0016469)
    - archaeal proton-transporting A-type ATPase complex (GO:1990490)
    - proton-transporting ATP synthase complex (GO:0045259)
      [19 PDB entries]
    - proton-transporting two-sector ATPase complex, catalytic domain (GO:0033178)
      [148 PDB entries]
    - proton-transporting two-sector ATPase complex, proton-transporting domain (GO:0033177)
      [73 PDB entries]
    - proton-transporting V-type ATPase complex (GO:0033176)
  - proton-transporting two-sector ATPase complex, catalytic domain (GO:0033178)
    [148 PDB entries]
  - proton-transporting two-sector ATPase complex, proton-transporting domain (GO:0033177)
    [73 PDB entries]
  - Ragulator complex (GO:0071986)
    [9 PDB entries]
  - respiratory chain complex (GO:0098803)
    - fumarate reductase complex (GO:0045283)
    - mitochondrial respiratory chain complex I, membrane segment (GO:0042653)
    - mitochondrial respiratory chain complex I, peripheral segment (GO:0042652)
    - NarGHI complex (GO:0044799)
      [11 PDB entries]
    - respiratory chain complex I (GO:0045271)
      [5 PDB entries]
    - respiratory chain complex II (GO:0045273)
    - respiratory chain complex III (GO:0045275)
      [63 PDB entries]
    - respiratory chain complex IV (GO:0045277)
      [39 PDB entries]
    - succinate dehydrogenase complex (GO:0045281)
      [52 PDB entries]
  - retromer complex (GO:0030904)
    [53 PDB entries]
  - retromer, cargo-selective complex (GO:0030906)
    [14 PDB entries]
  - retromer, tubulation complex (GO:0030905)
    [5 PDB entries]
  - Sec62/Sec63 complex (GO:0031207)
    [1 PDB entries]
  - signal peptidase complex (GO:0005787)
  - signal recognition particle receptor complex (GO:0005785)
    [14 PDB entries]
  - SNARE complex (GO:0031201)
    [124 PDB entries]
  - sodium ion-transporting two-sector ATPase complex (GO:0016472)
    - sodium ion-transporting F-type ATPase complex (GO:0016473)
    - sodium ion-transporting V-type ATPase complex (GO:0016474)
  - SREBP-SCAP complex (GO:0032936)
    [3 PDB entries]
  - SREBP-SCAP-Insig complex (GO:0032937)
    [3 PDB entries]
  - starch utilization system complex (GO:0044570)
  - STING complex (GO:1990231)
  - TAP complex (GO:0042825)
    [7 PDB entries]
  - Tapasin-ERp57 complex (GO:0061779)
  - Tic complex (GO:0031897)
    [2 PDB entries]
  - Toc complex (GO:0010006)
    [2 PDB entries]
  - translocon complex (GO:0071256)
    - Sec61 translocon complex (GO:0005784)
      [9 PDB entries]
    - Ssh1 translocon complex (GO:0071261)
      [2 PDB entries]
  - transmembrane transporter complex (GO:1902495)
    [7 PDB entries]
  - UDP-N-acetylglucosamine transferase complex (GO:0043541)
    [2 PDB entries]
  - VCP-NPL4-UFD1 AAA ATPase complex (GO:0034098)
    [57 PDB entries]
  - Vps55/Vps68 complex (GO:0034424)
- membrane region (GO:0098589)
  - annulate lamellae (GO:0005642)
    [32 PDB entries]
  - attachment organelle membrane (GO:0033111)
  - inner acrosomal membrane (GO:0002079)
    [7 PDB entries]
  - membrane microdomain (GO:0098857)
    [2 PDB entries]
  - outer acrosomal membrane (GO:0002081)
    [3 PDB entries]
  - prospore membrane leading edge (GO:0070056)
- mitochondrial membrane part (GO:0044455)
  - bridge contact site (GO:0044285)
  - contact site (GO:0044289)
  - cytoplasmic side of mitochondrial outer membrane (GO:0032473)
    [6 PDB entries]
  - extrinsic component of mitochondrial inner membrane (GO:0031314)
    [12 PDB entries]
  - extrinsic component of mitochondrial outer membrane (GO:0031315)
  - inner mitochondrial membrane protein complex (GO:0098800)
    - heterotetrameric decaprenyl diphosphate synthase complex (GO:0032478)
    - i-AAA complex (GO:0031942)
      [1 PDB entries]
    - INA complex (GO:1990524)
    - m-AAA complex (GO:0005745)
    - MICOS complex (GO:0061617)
    - mitochondrial inner membrane assembly complex (GO:1990677)
    - mitochondrial inner membrane peptidase complex (GO:0042720)
    - mitochondrial prohibitin complex (GO:0035632)
    - mitochondrial proton-transporting ATP synthase complex (GO:0005753)
      [91 PDB entries]
    - mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) (GO:0000275)
      [34 PDB entries]
    - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) (GO:0000276)
      [26 PDB entries]
    - mitochondrial proton-transporting ATP synthase, catalytic core (GO:0005754)
      [12 PDB entries]
    - mitochondrial proton-transporting ATP synthase, central stalk (GO:0005756)
      [14 PDB entries]
    - mitochondrial proton-transporting ATP synthase, stator stalk (GO:0000274)
      [3 PDB entries]
    - mitochondrial respiratory chain complex I (GO:0005747)
      [78 PDB entries]
    - mitochondrial respiratory chain complex I, membrane segment (GO:0042653)
    - mitochondrial respiratory chain complex I, peripheral segment (GO:0042652)
    - mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) (GO:0005749)
      [43 PDB entries]
    - mitochondrial respiratory chain complex III (GO:0005750)
      [58 PDB entries]
    - mitochondrial respiratory chain complex IV (GO:0005751)
      [44 PDB entries]
    - mitochondrial respiratory chain complex IV pre-assembly complex (GO:0062011)
    - mitochondrial respiratory chain supercomplex (GO:0097249)
      [4 PDB entries]
    - PAM complex, Tim23 associated import motor (GO:0001405)
      [3 PDB entries]
    - TIM22 mitochondrial import inner membrane insertion complex (GO:0042721)
      [4 PDB entries]
    - TIM23 mitochondrial import inner membrane translocase complex (GO:0005744)
      [7 PDB entries]
    - uniplex complex (GO:1990246)
      [10 PDB entries]
  - intrinsic component of mitochondrial membrane (GO:0098573)
    - integral component of mitochondrial membrane (GO:0032592)
      [21 PDB entries]
    - intrinsic component of mitochondrial inner membrane (GO:0031304)
      [9 PDB entries]
    - intrinsic component of mitochondrial outer membrane (GO:0031306)
  - matrix side of mitochondrial inner membrane (GO:0099617)
    - extrinsic component of matrix side of mitochondrial inner membrane (GO:0099616)
  - mitochondrial crista (GO:0030061)
    [20 PDB entries]
  - mitochondrial crista junction (GO:0044284)
  - mitochondrial inner boundary membrane (GO:0097002)
  - mitochondrial membrane scission site (GO:0090692)
  - mitochondrial respiratory chain (GO:0005746)
    [55 PDB entries]
  - outer mitochondrial membrane protein complex (GO:0098799)
    - Cdc48p-Npl4p-Vms1p AAA ATPase complex (GO:0036266)
    - ERMES complex (GO:0032865)
      [3 PDB entries]
    - mitochondrial outer membrane translocase complex (GO:0005742)
      [14 PDB entries]
    - mitochondrial sorting and assembly machinery complex (GO:0001401)
- nuclear membrane part (GO:0044453)
  - 5-lipoxygenase complex (GO:0002180)
  - Asi complex (GO:0097658)
  - extrinsic component of nuclear outer membrane (GO:0031316)
  - intrinsic component of nuclear inner membrane (GO:0031229)
    - integral component of nuclear inner membrane (GO:0005639)
      [23 PDB entries]
  - intrinsic component of nuclear outer membrane (GO:0031308)
    - integral component of nuclear outer membrane (GO:0031309)
  - nuclear membrane complex Bqt3-Bqt4 (GO:1990862)
- nuclear outer membrane (GO:0005640)
  [82 PDB entries]
- perinuclear endoplasmic reticulum membrane (GO:1990578)
  [67 PDB entries]
- plasma membrane part (GO:0044459)
  - cell body membrane (GO:0044298)
    [1 PDB entries]
  - cell trailing edge membrane (GO:0031257)
    - uropod membrane (GO:0031259)
  - cellular bud membrane (GO:0033101)
    [2 PDB entries]
  - cellularization cleavage furrow invagination front (GO:0110071)
  - cleavage furrow leading edge (GO:0090689)
  - cleavage furrow rim (GO:0090688)
  - cytoplasmic side of plasma membrane (GO:0009898)
    [361 PDB entries]
  - cytoproct (GO:0031911)
  - cytostome (GO:0031910)
  - external side of plasma membrane (GO:0009897)
    [2688 PDB entries]
  - extrinsic component of plasma membrane (GO:0019897)
    [146 PDB entries]
  - growth cone membrane (GO:0032584)
    [15 PDB entries]
  - immunological synapse (GO:0001772)
    [265 PDB entries]
  - intracellular canaliculus (GO:0046691)
  - intrinsic component of plasma membrane (GO:0031226)
    [184 PDB entries]
  - lateral plasma membrane (GO:0016328)
    [218 PDB entries]
  - leading edge membrane (GO:0031256)
    [98 PDB entries]
  - medial membrane band (GO:0032178)
  - mesosome (GO:0046868)
  - orthogonal array (GO:1990014)
  - phagocytic cup (GO:0001891)
    [125 PDB entries]
  - phagocytic cup base (GO:0097204)
    [45 PDB entries]
  - phagocytic cup lip (GO:0097203)
    [1 PDB entries]
  - plasma membrane of growing cell tip (GO:1902929)
  - plasma membrane part of cell junction (GO:0061466)
  - plasma membrane part of cell-substrate junction. (GO:0061464)
    - plasma membrane part of hemidesmosome (GO:0061465)
  - plasma membrane protein complex (GO:0098797)
    [16 PDB entries]
  - plasma membrane region (GO:0098590)
    - apical plasma membrane (GO:0016324)
      [1200 PDB entries]
    - apicolateral plasma membrane (GO:0016327)
      [74 PDB entries]
    - basal plasma membrane (GO:0009925)
      [221 PDB entries]
    - basolateral plasma membrane (GO:0016323)
      [1823 PDB entries]
    - caveola neck (GO:0099400)
    - cell projection membrane (GO:0031253)
      [98 PDB entries]
    - cleavage furrow (GO:0032154)
      [319 PDB entries]
    - hinge region between urothelial plaques of apical plasma membrane (GO:0120003)
    - periciliary membrane compartment (GO:1990075)
      [3 PDB entries]
    - photoreceptor inner segment membrane (GO:0060342)
      [51 PDB entries]
    - plasma membrane of cell tip (GO:0031520)
      [1 PDB entries]
    - plasma membrane raft (GO:0044853)
      [246 PDB entries]
    - plasma membrane-derived thylakoid membrane (GO:0031676)
    - sperm head plasma membrane (GO:1990913)
    - synaptic membrane (GO:0097060)
      [51 PDB entries]
  - plasma membrane respiratory chain (GO:0070470)
    [2 PDB entries]
  - plasma membrane-derived thylakoid lumen (GO:0031979)
  - plasmodesmatal cytoplasmic sleeve (GO:0009546)
  - plasmodesmatal desmotubule (GO:0009510)
    - plasmodesmatal endoplasmic reticulum (GO:0009511)
  - plasmodesmatal endoplasmic reticulum (GO:0009511)
  - plasmodesmatal plasma membrane (GO:0009548)
  - porosome (GO:0033012)
  - subplasmalemmal coating (GO:0044280)
  - T-tubule (GO:0030315)
    [447 PDB entries]
  - tetraspanin-enriched microdomain (GO:0097197)
    [4 PDB entries]
- prospore membrane spindle pole body attachment site (GO:0070057)
- respiratory chain (GO:0070469)
  [324 PDB entries]
- side of membrane (GO:0098552)
  - cytoplasmic side of membrane (GO:0098562)
    - cytoplasmic side of endoplasmic reticulum membrane (GO:0098554)
      [147 PDB entries]
    - cytoplasmic side of endosome membrane (GO:0010009)
      [3 PDB entries]
    - cytoplasmic side of Golgi membrane (GO:0098548)
    - cytoplasmic side of lysosomal membrane (GO:0098574)
      [2 PDB entries]
    - cytoplasmic side of mitochondrial outer membrane (GO:0032473)
      [6 PDB entries]
    - cytoplasmic side of plasma membrane (GO:0009898)
      [361 PDB entries]
    - cytoplasmic side of transport vesicle membrane (GO:0098539)
  - external side of cell outer membrane (GO:0031240)
    [5 PDB entries]
  - external side of plasma membrane (GO:0009897)
    [2688 PDB entries]
  - internal side of mycolate outer membrane (GO:0098569)
  - lumenal side of endoplasmic reticulum membrane (GO:0098553)
    - integral component of lumenal side of endoplasmic reticulum membrane (GO:0071556)
      [792 PDB entries]
    - lumenal side of rough endoplasmic reticulum membrane (GO:0098555)
    - lumenal side of smooth endoplasmic reticulum membrane (GO:0098558)
  - lumenal side of membrane (GO:0098576)
    - lumenal side of endosome membrane (GO:0098565)
    - lumenal side of Golgi membrane (GO:0098547)
      [1 PDB entries]
    - lumenal side of lysosomal membrane (GO:0098575)
      [45 PDB entries]
    - lumenal side of rough endoplasmic reticulum membrane (GO:0098555)
    - lumenal side of smooth endoplasmic reticulum membrane (GO:0098558)
    - lumenal side of transport vesicle membrane (GO:0098538)
    - matrix side of mitochondrial inner membrane (GO:0099617)
      - extrinsic component of matrix side of mitochondrial inner membrane (GO:0099616)
  - lumenal side of plastid thylakoid membrane (GO:0098571)
  - periplasmic side of cell outer membrane (GO:0031241)
    [11 PDB entries]
  - stromal side of plastid inner membrane (GO:0098570)
    - extrinsic component of lumenal side of plastid thylakoid membrane (GO:0035450)
  - stromal side of plastid thylakoid membrane (GO:0098572)
    - extrinsic component of stromal side of plastid thylakoid membrane (GO:0035451)

Click on the GO accession number to get a tree view of the GO hierarchy without information on PDB entries. In this case your query level and all levels of higher hierarchy up to the root level Gene_Ontology (GO:0003673) are displayed.

If you enter the GO tree somewhere and if you want to get a view of the whole tree first click on the GO name. This yields the low-hierarchy part. Then click on the GO accession number of the lowest hierarchical level. This gives a view of the complete tree. Note, that certain GO terms belong to more than one path.

GO2PDB@JenaLib
Tue Jul 9 10:48:17 2019