GO2PDB - JenaLib

Search term(s): GO:0044106

Here you see a subgraph of the complete GO graph, with your query GO:0044106 as the highest hiearchical level and all levels of lower hierarchy. The number of PDB entries, for which a UniProt entry annotated with the corresponding GO term is available, is shown in square brackets for all hiearchical levels of the subgraph.

cellular amine metabolic process (GO:0044106)
- ascospore wall chitin biosynthetic process (GO:0034217)
  - regulation of ascospore wall chitin biosynthetic process (GO:0034223)
- beta-lactam antibiotic metabolic process (GO:0030653)
  - beta-lactam antibiotic biosynthetic process (GO:0030654)
    - carbapenem biosynthetic process (GO:1901769)
    - cephalosporin biosynthetic process (GO:0043646)
    - cephamycin C biosynthetic process (GO:1901118)
    - penicillin biosynthetic process (GO:0042318)
      [39 PDB entries]
  - beta-lactam antibiotic catabolic process (GO:0030655)
    [343 PDB entries]
  - carbapenem metabolic process (GO:1901767)
    - carbapenem biosynthetic process (GO:1901769)
    - carbapenem catabolic process (GO:1901768)
  - cephalosporin metabolic process (GO:0043645)
    - cephalosporin biosynthetic process (GO:0043646)
    - cephalosporin C metabolic process (GO:1901266)
  - cephamycin C metabolic process (GO:1901116)
    - cephamycin C biosynthetic process (GO:1901118)
    - cephamycin C catabolic process (GO:1901117)
  - penicillin metabolic process (GO:0042316)
    - benzylpenicillin metabolic process (GO:1901086)
    - negative regulation of penicillin metabolic process (GO:0033245)
    - penicillin biosynthetic process (GO:0042318)
      [39 PDB entries]
    - penicillin catabolic process (GO:0042317)
    - positive regulation of penicillin metabolic process (GO:0033246)
    - regulation of penicillin metabolic process (GO:0033244)
- cellular biogenic amine metabolic process (GO:0006576)
  [11 PDB entries]
- negative regulation of cellular amine metabolic process (GO:0033239)
  - negative regulation of acetylcholine metabolic process (GO:0060410)
    - negative regulation of acetylcholine biosynthetic process (GO:1905922)
  - negative regulation of catecholamine metabolic process (GO:0045914)
    - negative regulation of dopamine metabolic process (GO:0045963)
      [85 PDB entries]
  - negative regulation of cellular amine catabolic process (GO:0033242)
    - negative regulation of arginine catabolic process (GO:1900082)
      [2 PDB entries]
    - negative regulation of proline catabolic process to glutamate (GO:2001157)
  - negative regulation of cellular amino acid metabolic process (GO:0045763)
    - negative regulation of 'de novo' NAD biosynthetic process from tryptophan (GO:1905013)
    - negative regulation of arginine catabolic process (GO:1900082)
      [2 PDB entries]
    - negative regulation of cellular amino acid biosynthetic process (GO:2000283)
    - negative regulation of gamma-aminobutyric acid catabolic process (GO:1901716)
    - negative regulation of glutamate metabolic process (GO:2000212)
    - negative regulation of indoleacetic acid biosynthetic process via tryptophan (GO:1901997)
    - negative regulation of ornithine catabolic process (GO:1903267)
    - negative regulation of proline metabolic process (GO:2000215)
    - negative regulation of selenocysteine metabolic process (GO:1905826)
    - negative regulation of sulfur amino acid metabolic process (GO:0031336)
    - negative regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA (GO:1901414)
  - negative regulation of penicillin metabolic process (GO:0033245)
  - negative regulation of spermidine biosynthetic process (GO:1901305)
- positive regulation of cellular amine metabolic process (GO:0033240)
  - positive regulation of acetylcholine metabolic process (GO:0060409)
    [2 PDB entries]
  - positive regulation of catecholamine metabolic process (GO:0045915)
    - positive regulation of dopamine metabolic process (GO:0045964)
      [60 PDB entries]
  - positive regulation of cellular amine catabolic process (GO:0033243)
    - negative regulation of arginine catabolic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900465)
      [1 PDB entries]
    - positive regulation of proline catabolic process to glutamate (GO:2001158)
      [2 PDB entries]
  - positive regulation of cellular amino acid metabolic process (GO:0045764)
    - negative regulation of arginine catabolic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900465)
      [1 PDB entries]
    - positive regulation of cellular amino acid biosynthetic process (GO:2000284)
    - positive regulation of gamma-aminobutyric acid catabolic process (GO:1901717)
    - positive regulation of glutamate metabolic process (GO:2000213)
      [66 PDB entries]
    - positive regulation of ornithine catabolic process (GO:1903268)
    - positive regulation of proline metabolic process (GO:2000216)
    - positive regulation of selenocysteine metabolic process (GO:1905827)
    - positive regulation of sulfur amino acid metabolic process (GO:0031337)
    - positive regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA (GO:1901415)
    - positive regulation of tryptophan metabolic process (GO:0090358)
  - positive regulation of penicillin metabolic process (GO:0033246)
  - positive regulation of spermidine biosynthetic process (GO:1901307)
    [3 PDB entries]
- regulation of cellular amine metabolic process (GO:0033238)
  - negative regulation of cellular amine metabolic process (GO:0033239)
    - negative regulation of acetylcholine metabolic process (GO:0060410)
      - negative regulation of acetylcholine biosynthetic process (GO:1905922)
    - negative regulation of catecholamine metabolic process (GO:0045914)
      - negative regulation of dopamine metabolic process (GO:0045963)
        [85 PDB entries]
    - negative regulation of cellular amine catabolic process (GO:0033242)
      - negative regulation of arginine catabolic process (GO:1900082)
        [2 PDB entries]
      - negative regulation of proline catabolic process to glutamate (GO:2001157)
    - negative regulation of cellular amino acid metabolic process (GO:0045763)
      - negative regulation of 'de novo' NAD biosynthetic process from tryptophan (GO:1905013)
      - negative regulation of arginine catabolic process (GO:1900082)
        [2 PDB entries]
      - negative regulation of cellular amino acid biosynthetic process (GO:2000283)
      - negative regulation of gamma-aminobutyric acid catabolic process (GO:1901716)
      - negative regulation of glutamate metabolic process (GO:2000212)
      - negative regulation of indoleacetic acid biosynthetic process via tryptophan (GO:1901997)
      - negative regulation of ornithine catabolic process (GO:1903267)
      - negative regulation of proline metabolic process (GO:2000215)
      - negative regulation of selenocysteine metabolic process (GO:1905826)
      - negative regulation of sulfur amino acid metabolic process (GO:0031336)
      - negative regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA (GO:1901414)
    - negative regulation of penicillin metabolic process (GO:0033245)
    - negative regulation of spermidine biosynthetic process (GO:1901305)
  - positive regulation of cellular amine metabolic process (GO:0033240)
    - positive regulation of acetylcholine metabolic process (GO:0060409)
      [2 PDB entries]
    - positive regulation of catecholamine metabolic process (GO:0045915)
      - positive regulation of dopamine metabolic process (GO:0045964)
        [60 PDB entries]
    - positive regulation of cellular amine catabolic process (GO:0033243)
      - negative regulation of arginine catabolic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900465)
        [1 PDB entries]
      - positive regulation of proline catabolic process to glutamate (GO:2001158)
        [2 PDB entries]
    - positive regulation of cellular amino acid metabolic process (GO:0045764)
      - negative regulation of arginine catabolic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900465)
        [1 PDB entries]
      - positive regulation of cellular amino acid biosynthetic process (GO:2000284)
      - positive regulation of gamma-aminobutyric acid catabolic process (GO:1901717)
      - positive regulation of glutamate metabolic process (GO:2000213)
        [66 PDB entries]
      - positive regulation of ornithine catabolic process (GO:1903268)
      - positive regulation of proline metabolic process (GO:2000216)
      - positive regulation of selenocysteine metabolic process (GO:1905827)
      - positive regulation of sulfur amino acid metabolic process (GO:0031337)
      - positive regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA (GO:1901415)
      - positive regulation of tryptophan metabolic process (GO:0090358)
    - positive regulation of penicillin metabolic process (GO:0033246)
    - positive regulation of spermidine biosynthetic process (GO:1901307)
      [3 PDB entries]
  - regulation of acetylcholine metabolic process (GO:0060408)
    - negative regulation of acetylcholine metabolic process (GO:0060410)
      - negative regulation of acetylcholine biosynthetic process (GO:1905922)
    - positive regulation of acetylcholine metabolic process (GO:0060409)
      [2 PDB entries]
    - regulation of acetylcholine biosynthetic process (GO:1905921)
  - regulation of ascospore wall chitin biosynthetic process (GO:0034223)
  - regulation of catecholamine metabolic process (GO:0042069)
    [1 PDB entries]
  - regulation of cellular amine catabolic process (GO:0033241)
    - negative regulation of cellular amine catabolic process (GO:0033242)
      - negative regulation of arginine catabolic process (GO:1900082)
        [2 PDB entries]
      - negative regulation of proline catabolic process to glutamate (GO:2001157)
    - positive regulation of cellular amine catabolic process (GO:0033243)
      - negative regulation of arginine catabolic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900465)
        [1 PDB entries]
      - positive regulation of proline catabolic process to glutamate (GO:2001158)
        [2 PDB entries]
    - regulation of arginine catabolic process (GO:1900081)
    - regulation of proline catabolic process to glutamate (GO:2001156)
  - regulation of cellular amino acid metabolic process (GO:0006521)
    [341 PDB entries]
  - regulation of penicillin metabolic process (GO:0033244)
  - regulation of polyamine biosynthetic process (GO:0010967)
- triethanolamine metabolic process (GO:0018981)
  - triethanolamine catabolic process (GO:0046267)

Click on the GO accession number to get a tree view of the GO hierarchy without information on PDB entries. In this case your query level and all levels of higher hierarchy up to the root level Gene_Ontology (GO:0003673) are displayed.

If you enter the GO tree somewhere and if you want to get a view of the whole tree first click on the GO name. This yields the low-hierarchy part. Then click on the GO accession number of the lowest hierarchical level. This gives a view of the complete tree. Note, that certain GO terms belong to more than one path.

GO2PDB@JenaLib
Tue Jul 9 10:48:17 2019