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   Search term(s): GO:0042435

Here you see a subgraph of the complete GO graph, with your query GO:0042435 as the highest hiearchical level and all levels of lower hierarchy. The number of PDB entries, for which a UniProt entry annotated with the corresponding GO term is available, is shown in square brackets for all hiearchical levels of the subgraph.

• indole-containing compound biosynthetic process (GO:0042435)
  • brevianamide F biosynthetic process (GO:1900805)
    • negative regulation of brevianamide F biosynthetic process (GO:1900859)
    • positive regulation of brevianamide F biosynthetic process (GO:1900860)
    • regulation of brevianamide F biosynthetic process (GO:1900858)
      • negative regulation of brevianamide F biosynthetic process (GO:1900859)
      • positive regulation of brevianamide F biosynthetic process (GO:1900860)
  • fumiquinazoline F biosynthetic process (GO:1900784)
  • indolalkylamine biosynthetic process (GO:0046219)
    [14 PDB entries]
    
    
  • tryptophan biosynthetic process (GO:0000162)
    [227 PDB entries]
    
    
  • indole biosynthetic process (GO:0042432)
  • indole glucosinolate biosynthetic process (GO:0009759)
  • indole phytoalexin biosynthetic process (GO:0009700)
    • camalexin biosynthetic process (GO:0010120)
      [2 PDB entries]
      
      
    • positive regulation of camalexin biosynthetic process (GO:1901183)
      [1 PDB entries]
      
      
    • regulation of camalexin biosynthetic process (GO:1901182)
  • indoleacetic acid biosynthetic process (GO:0009684)
    [2 PDB entries]
    
    
  • indoleacetic acid biosynthetic process via tryptophan (GO:0009848)
    • negative regulation of indoleacetic acid biosynthetic process via tryptophan (GO:1901997)
    • regulation of indoleacetic acid biosynthetic process via tryptophan (GO:1901996)
  • tryptophan-independent indoleacetic acid biosynthetic process (GO:0009849)
  • indoleacetic acid conjugate biosynthetic process (GO:0033474)
    • indoleacetic acid amide conjugate biosynthetic process (GO:0033475)
    • indoleacetic acid ester conjugate biosynthetic process (GO:0033476)
  • melatonin biosynthetic process (GO:0030187)
    [20 PDB entries]
    
    
  • serotonin biosynthetic process (GO:0042427)
    [13 PDB entries]
    
    
  • negative regulation of serotonin biosynthetic process (GO:1905628)
  • positive regulation of serotonin biosynthetic process (GO:1905629)
  • regulation of serotonin biosynthetic process (GO:1905627)
    • negative regulation of serotonin biosynthetic process (GO:1905628)
    • positive regulation of serotonin biosynthetic process (GO:1905629)
  • serotonin biosynthetic process from tryptophan (GO:0006587)
    [1 PDB entries]
    
    
  • activation of tryptophan 5-monooxygenase activity (GO:0006588)

Click on the GO accession number to get a tree view of the GO hierarchy without information on PDB entries. In this case your query level and all levels of higher hierarchy up to the root level Gene_Ontology (GO:0003673) are displayed.

If you enter the GO tree somewhere and if you want to get a view of the whole tree first click on the GO name. This yields the low-hierarchy part. Then click on the GO accession number of the lowest hierarchical level. This gives a view of the complete tree. Note, that certain GO terms belong to more than one path.

GO2PDB@JenaLib
Tue Jul 9 10:48:17 2019