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   Search term(s): GO:0042430

Here you see a subgraph of the complete GO graph, with your query GO:0042430 as the highest hiearchical level and all levels of lower hierarchy. The number of PDB entries, for which a UniProt entry annotated with the corresponding GO term is available, is shown in square brackets for all hiearchical levels of the subgraph.

• indole-containing compound metabolic process (GO:0042430)
  • brevianamide F metabolic process (GO:1900803)
    • brevianamide F biosynthetic process (GO:1900805)
      • negative regulation of brevianamide F biosynthetic process (GO:1900859)
      • positive regulation of brevianamide F biosynthetic process (GO:1900860)
      • regulation of brevianamide F biosynthetic process (GO:1900858)
    • brevianamide F catabolic process (GO:1900804)
  • fumiquinazoline F metabolic process (GO:1900782)
    • fumiquinazoline F biosynthetic process (GO:1900784)
    • fumiquinazoline F catabolic process (GO:1900783)
  • indolalkylamine metabolic process (GO:0006586)
    • indolalkylamine biosynthetic process (GO:0046219)
      [14 PDB entries]
      
      
    • tryptophan biosynthetic process (GO:0000162)
      [227 PDB entries]
      
      
    • indolalkylamine catabolic process (GO:0046218)
      • tryptophan catabolic process (GO:0006569)
        [112 PDB entries]
        
        
    • tryptophan metabolic process (GO:0006568)
      [210 PDB entries]
      
      
    • 'de novo' NAD biosynthetic process from tryptophan (GO:0034354)
      [43 PDB entries]
      
      
    • indoleacetic acid biosynthetic process via tryptophan (GO:0009848)
    • nicotinate nucleotide biosynthetic process from tryptophan (GO:0019356)
    • positive regulation of tryptophan metabolic process (GO:0090358)
    • regulation of tryptophan metabolic process (GO:0090357)
    • serotonin biosynthetic process from tryptophan (GO:0006587)
      [1 PDB entries]
      
      
    • tryptophan biosynthetic process (GO:0000162)
      [227 PDB entries]
      
      
    • tryptophan catabolic process (GO:0006569)
      [112 PDB entries]
      
      
  • indole glucosinolate metabolic process (GO:0042343)
    • indole glucosinolate biosynthetic process (GO:0009759)
    • indole glucosinolate catabolic process (GO:0042344)
  • indole metabolic process (GO:0042431)
    • indole biosynthetic process (GO:0042432)
    • indole catabolic process (GO:0042433)
  • indole phytoalexin metabolic process (GO:0046217)
    • camalexin metabolic process (GO:0052317)
      • camalexin biosynthetic process (GO:0010120)
        [2 PDB entries]
        
        
    • indole phytoalexin biosynthetic process (GO:0009700)
      • camalexin biosynthetic process (GO:0010120)
        [2 PDB entries]
        
        
    • indole phytoalexin catabolic process (GO:0046216)
  • indole-containing compound biosynthetic process (GO:0042435)
    • brevianamide F biosynthetic process (GO:1900805)
      • negative regulation of brevianamide F biosynthetic process (GO:1900859)
      • positive regulation of brevianamide F biosynthetic process (GO:1900860)
      • regulation of brevianamide F biosynthetic process (GO:1900858)
    • fumiquinazoline F biosynthetic process (GO:1900784)
    • indolalkylamine biosynthetic process (GO:0046219)
      [14 PDB entries]
      
      
    • tryptophan biosynthetic process (GO:0000162)
      [227 PDB entries]
      
      
    • indole biosynthetic process (GO:0042432)
    • indole glucosinolate biosynthetic process (GO:0009759)
    • indole phytoalexin biosynthetic process (GO:0009700)
      • camalexin biosynthetic process (GO:0010120)
        [2 PDB entries]
        
        
    • indoleacetic acid biosynthetic process (GO:0009684)
      [2 PDB entries]
      
      
    • indoleacetic acid biosynthetic process via tryptophan (GO:0009848)
    • tryptophan-independent indoleacetic acid biosynthetic process (GO:0009849)
    • indoleacetic acid conjugate biosynthetic process (GO:0033474)
      • indoleacetic acid amide conjugate biosynthetic process (GO:0033475)
      • indoleacetic acid ester conjugate biosynthetic process (GO:0033476)
    • melatonin biosynthetic process (GO:0030187)
      [20 PDB entries]
      
      
    • serotonin biosynthetic process (GO:0042427)
      [13 PDB entries]
      
      
    • negative regulation of serotonin biosynthetic process (GO:1905628)
    • positive regulation of serotonin biosynthetic process (GO:1905629)
    • regulation of serotonin biosynthetic process (GO:1905627)
    • serotonin biosynthetic process from tryptophan (GO:0006587)
      [1 PDB entries]
      
      
  • indole-containing compound catabolic process (GO:0042436)
    • brevianamide F catabolic process (GO:1900804)
    • fumiquinazoline F catabolic process (GO:1900783)
    • indolalkylamine catabolic process (GO:0046218)
      • tryptophan catabolic process (GO:0006569)
        [112 PDB entries]
        
        
    • indole catabolic process (GO:0042433)
    • indole glucosinolate catabolic process (GO:0042344)
    • indole phytoalexin catabolic process (GO:0046216)
    • indoleacetic acid catabolic process (GO:0042437)
    • melatonin catabolic process (GO:0042442)
    • serotonin catabolic process (GO:0042429)
      [11 PDB entries]
      
      
  • indoleacetic acid metabolic process (GO:0009683)
    • indoleacetic acid biosynthetic process (GO:0009684)
      [2 PDB entries]
      
      
    • indoleacetic acid biosynthetic process via tryptophan (GO:0009848)
    • tryptophan-independent indoleacetic acid biosynthetic process (GO:0009849)
    • indoleacetic acid catabolic process (GO:0042437)
    • indoleacetic acid conjugate metabolic process (GO:0033473)
      • indoleacetic acid conjugate biosynthetic process (GO:0033474)
        • indoleacetic acid amide conjugate biosynthetic process (GO:0033475)
        • indoleacetic acid ester conjugate biosynthetic process (GO:0033476)
    • tryptophan catabolic process to indole-3-acetate (GO:0019440)
  • indolebutyric acid metabolic process (GO:0080024)
  • melatonin metabolic process (GO:0030186)
    • melatonin biosynthetic process (GO:0030187)
      [20 PDB entries]
      
      
    • melatonin catabolic process (GO:0042442)
  • serotonin metabolic process (GO:0042428)
    [51 PDB entries]
    
    
  • serotonin biosynthetic process (GO:0042427)
    [13 PDB entries]
    
    
  • negative regulation of serotonin biosynthetic process (GO:1905628)
  • positive regulation of serotonin biosynthetic process (GO:1905629)
  • regulation of serotonin biosynthetic process (GO:1905627)
  • serotonin biosynthetic process from tryptophan (GO:0006587)
    [1 PDB entries]
    
    
  • serotonin catabolic process (GO:0042429)
    [11 PDB entries]
    
    

Click on the GO accession number to get a tree view of the GO hierarchy without information on PDB entries. In this case your query level and all levels of higher hierarchy up to the root level Gene_Ontology (GO:0003673) are displayed.

If you enter the GO tree somewhere and if you want to get a view of the whole tree first click on the GO name. This yields the low-hierarchy part. Then click on the GO accession number of the lowest hierarchical level. This gives a view of the complete tree. Note, that certain GO terms belong to more than one path.

GO2PDB@JenaLib
Tue Jul 9 10:48:17 2019