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   Search term(s): GO:0022613

Here you see a subgraph of the complete GO graph, with your query GO:0022613 as the highest hiearchical level and all levels of lower hierarchy. The number of PDB entries, for which a UniProt entry annotated with the corresponding GO term is available, is shown in square brackets for all hiearchical levels of the subgraph.

• ribonucleoprotein complex biogenesis (GO:0022613)
  [2 PDB entries]
  
  
• ribonucleoprotein complex assembly (GO:0022618)
  [82 PDB entries]
  
  
• 90S preribosome assembly (GO:0034463)
  [11 PDB entries]
  
  
• assembly of large subunit precursor of preribosome (GO:1902626)
  [83 PDB entries]
  
  
• positive regulation of assembly of large subunit precursor of preribosome (GO:1902628)
• regulation of assembly of large subunit precursor of preribosome (GO:1902627)
• cis assembly of pre-catalytic spliceosome (GO:0000354)
  [15 PDB entries]
  
  
• cytoplasmic mRNA processing body assembly (GO:0033962)
  [60 PDB entries]
  
  
• negative regulation of cytoplasmic mRNA processing body assembly (GO:0010607)
• positive regulation of cytoplasmic mRNA processing body assembly (GO:0010606)
  [24 PDB entries]
  
  
• regulation of cytoplasmic mRNA processing body assembly (GO:0010603)
  [4 PDB entries]
  
  
• cytoplasmic U snRNP body assembly (GO:1990194)
  [1 PDB entries]
  
  
• formation of cytoplasmic translation initiation complex (GO:0001732)
  [20 PDB entries]
  
  
• formation of quadruple SL/U4/U5/U6 snRNP (GO:0000353)
• formation of translation initiation ternary complex (GO:0001677)
  • negative regulation of formation of translation initiation ternary complex (GO:1901191)
  • positive regulation of formation of translation initiation ternary complex (GO:1901192)
  • regulation of formation of translation initiation ternary complex (GO:1901190)
    [4 PDB entries]
    
    
• formation of translation preinitiation complex (GO:0001731)
  [78 PDB entries]
  
  
• negative regulation of formation of translation preinitiation complex (GO:1901194)
  [5 PDB entries]
  
  
• positive regulation of formation of translation preinitiation complex (GO:1901195)
• regulation of formation of translation preinitiation complex (GO:1901193)
• generation of catalytic spliceosome for first transesterification step (GO:0000349)
  [21 PDB entries]
  
  
• generation of catalytic spliceosome for second transesterification step (GO:0000350)
  [33 PDB entries]
  
  
• alignment of 3' and 5' splice sites of mRNA (GO:0034403)
• messenger ribonucleoprotein complex assembly (GO:1990120)
• mRNA branch site recognition (GO:0000348)
  [8 PDB entries]
  
  
• mRNA splice site selection (GO:0006376)
  [30 PDB entries]
  
  
• mRNA 3'-splice site recognition (GO:0000389)
  [42 PDB entries]
  
  
• mRNA 5'-splice site recognition (GO:0000395)
  [27 PDB entries]
  
  
• P granule assembly (GO:1903863)
• recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex (GO:0034402)
  [81 PDB entries]
  
  
• phosphorylation of RNA polymerase II C-terminal domain involved in recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex (GO:1901921)
• recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex (GO:0036031)
  [1 PDB entries]
  
  
• phosphorylation of RNA polymerase II C-terminal domain serine 5 residues involved in recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex (GO:1900018)
• ribosomal large subunit assembly (GO:0000027)
  [509 PDB entries]
  
  
• 90S preribosome assembly (GO:0034463)
  [11 PDB entries]
  
  
• mitochondrial large ribosomal subunit assembly (GO:1902775)
  [1 PDB entries]
  
  
• ribosomal small subunit assembly (GO:0000028)
  [257 PDB entries]
  
  
• 90S preribosome assembly (GO:0034463)
  [11 PDB entries]
  
  
• small-subunit processome assembly (GO:0034462)
• ribosome assembly (GO:0042255)
  [20 PDB entries]
  
  
• mature ribosome assembly (GO:0042256)
  [52 PDB entries]
  
  
• mitochondrial ribosome assembly (GO:0061668)
• ribosomal large subunit assembly (GO:0000027)
  [509 PDB entries]
  
  
• 90S preribosome assembly (GO:0034463)
  [11 PDB entries]
  
  
• mitochondrial large ribosomal subunit assembly (GO:1902775)
  [1 PDB entries]
  
  
• ribosomal small subunit assembly (GO:0000028)
  [257 PDB entries]
  
  
• 90S preribosome assembly (GO:0034463)
  [11 PDB entries]
  
  
• small-subunit processome assembly (GO:0034462)
• RITS complex assembly (GO:1904802)
• small nucleolar ribonucleoprotein complex assembly (GO:0000491)
  • box C/D snoRNP assembly (GO:0000492)
    [63 PDB entries]
    
    
  • box H/ACA snoRNP assembly (GO:0000493)
    [7 PDB entries]
    
    
• small RNA loading onto RISC (GO:0070922)
  • miRNA loading onto RISC involved in gene silencing by miRNA (GO:0035280)
    [60 PDB entries]
    
    
  • siRNA loading onto RISC involved in chromatin silencing by small RNA (GO:0070923)
  • siRNA loading onto RISC involved in RNA interference (GO:0035087)
    [48 PDB entries]
    
    
• small-subunit processome assembly (GO:0034462)
• spliceosomal complex assembly (GO:0000245)
  [108 PDB entries]
  
  
• cis assembly of pre-catalytic spliceosome (GO:0000354)
  [15 PDB entries]
  
  
• mRNA branch site recognition (GO:0000348)
  [8 PDB entries]
  
  
• mRNA splice site selection (GO:0006376)
  [30 PDB entries]
  
  
• mRNA 3'-splice site recognition (GO:0000389)
  [42 PDB entries]
  
  
• mRNA 5'-splice site recognition (GO:0000395)
  [27 PDB entries]
  
  
• trans assembly of SL-containing precatalytic spliceosome (GO:0000352)
• U2-type prespliceosome assembly (GO:1903241)
• spliceosomal conformational changes to generate catalytic conformation (GO:0000393)
  [1 PDB entries]
  
  
• generation of catalytic spliceosome for first transesterification step (GO:0000349)
  [21 PDB entries]
  
  
• generation of catalytic spliceosome for second transesterification step (GO:0000350)
  [33 PDB entries]
  
  
• alignment of 3' and 5' splice sites of mRNA (GO:0034403)
• spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) (GO:0000388)
  [20 PDB entries]
  
  
• spliceosomal snRNP assembly (GO:0000387)
  [101 PDB entries]
  
  
• spliceosomal tri-snRNP complex assembly (GO:0000244)
  [76 PDB entries]
  
  
• spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) (GO:0000388)
  [20 PDB entries]
  
  
• stress granule assembly (GO:0034063)
  [58 PDB entries]
  
  
• negative regulation of stress granule assembly (GO:0062030)
• positive regulation of stress granule assembly (GO:0062029)
• regulation of stress granule assembly (GO:0062028)
• targeting of mRNA for destruction involved in RNA interference (GO:0030423)
  [24 PDB entries]
  
  
• telomerase holoenzyme complex assembly (GO:1905323)
  • telomerase catalytic core complex assembly (GO:1904868)
• trans assembly of SL-containing precatalytic spliceosome (GO:0000352)
• ribosomal large subunit biogenesis (GO:0042273)
  [140 PDB entries]
  
  
• maturation of LSU-rRNA (GO:0000470)
  [170 PDB entries]
  
  
• maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA) (GO:0000473)
• maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) (GO:0000488)
• maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (GO:0000463)
  [102 PDB entries]
  
  
• maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) (GO:0002108)
• ribosomal large subunit assembly (GO:0000027)
  [509 PDB entries]
  
  
• 90S preribosome assembly (GO:0034463)
  [11 PDB entries]
  
  
• mitochondrial large ribosomal subunit assembly (GO:1902775)
  [1 PDB entries]
  
  
• ribosomal small subunit biogenesis (GO:0042274)
  [148 PDB entries]
  
  
• maturation of SSU-rRNA (GO:0030490)
  [47 PDB entries]
  
  
• maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA) (GO:0000474)
• maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) (GO:0000489)
• maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (GO:0000462)
  [245 PDB entries]
  
  
• maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) (GO:0002109)
  [67 PDB entries]
  
  
• rRNA acetylation involved in maturation of SSU-rRNA (GO:1904812)
• ribosomal small subunit assembly (GO:0000028)
  [257 PDB entries]
  
  
• 90S preribosome assembly (GO:0034463)
  [11 PDB entries]
  
  
• small-subunit processome assembly (GO:0034462)
• ribosome biogenesis (GO:0042254)
  [746 PDB entries]
  
  
• negative regulation of ribosome biogenesis (GO:0090071)
  [11 PDB entries]
  
  
• negative regulation of ribosomal subunit export from nucleus (GO:2000201)
• negative regulation of rRNA processing (GO:2000233)
  [12 PDB entries]
  
  
• positive regulation of ribosome biogenesis (GO:0090070)
  • positive regulation of ribosomal subunit export from nucleus (GO:2000202)
  • positive regulation of rRNA processing (GO:2000234)
    [3 PDB entries]
    
    
• regulation of ribosome biogenesis (GO:0090069)
  • negative regulation of ribosome biogenesis (GO:0090071)
    [11 PDB entries]
    
    
  • negative regulation of ribosomal subunit export from nucleus (GO:2000201)
  • negative regulation of rRNA processing (GO:2000233)
    [12 PDB entries]
    
    
  • positive regulation of ribosome biogenesis (GO:0090070)
    • positive regulation of ribosomal subunit export from nucleus (GO:2000202)
    • positive regulation of rRNA processing (GO:2000234)
      [3 PDB entries]
      
      
  • regulation of ribosomal subunit export from nucleus (GO:2000200)
  • regulation of rRNA processing (GO:2000232)
    [9 PDB entries]
    
    
• ribosomal large subunit biogenesis (GO:0042273)
  [140 PDB entries]
  
  
• maturation of LSU-rRNA (GO:0000470)
  [170 PDB entries]
  
  
• maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA) (GO:0000473)
• maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) (GO:0000488)
• maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (GO:0000463)
  [102 PDB entries]
  
  
• maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) (GO:0002108)
• ribosomal large subunit assembly (GO:0000027)
  [509 PDB entries]
  
  
• 90S preribosome assembly (GO:0034463)
  [11 PDB entries]
  
  
• mitochondrial large ribosomal subunit assembly (GO:1902775)
  [1 PDB entries]
  
  
• ribosomal small subunit biogenesis (GO:0042274)
  [148 PDB entries]
  
  
• maturation of SSU-rRNA (GO:0030490)
  [47 PDB entries]
  
  
• maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA) (GO:0000474)
• maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) (GO:0000489)
• maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (GO:0000462)
  [245 PDB entries]
  
  
• maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) (GO:0002109)
  [67 PDB entries]
  
  
• rRNA acetylation involved in maturation of SSU-rRNA (GO:1904812)
• ribosomal small subunit assembly (GO:0000028)
  [257 PDB entries]
  
  
• 90S preribosome assembly (GO:0034463)
  [11 PDB entries]
  
  
• small-subunit processome assembly (GO:0034462)
• ribosomal subunit export from nucleus (GO:0000054)
  [37 PDB entries]
  
  
• negative regulation of ribosomal subunit export from nucleus (GO:2000201)
• positive regulation of ribosomal subunit export from nucleus (GO:2000202)
• regulation of ribosomal subunit export from nucleus (GO:2000200)
• ribosomal large subunit export from nucleus (GO:0000055)
  [174 PDB entries]
  
  
• ribosomal small subunit export from nucleus (GO:0000056)
  [151 PDB entries]
  
  
• ribosome assembly (GO:0042255)
  [20 PDB entries]
  
  
• mature ribosome assembly (GO:0042256)
  [52 PDB entries]
  
  
• mitochondrial ribosome assembly (GO:0061668)
• ribosomal large subunit assembly (GO:0000027)
  [509 PDB entries]
  
  
• 90S preribosome assembly (GO:0034463)
  [11 PDB entries]
  
  
• mitochondrial large ribosomal subunit assembly (GO:1902775)
  [1 PDB entries]
  
  
• ribosomal small subunit assembly (GO:0000028)
  [257 PDB entries]
  
  
• 90S preribosome assembly (GO:0034463)
  [11 PDB entries]
  
  
• small-subunit processome assembly (GO:0034462)
• rRNA export from nucleus (GO:0006407)
  [87 PDB entries]
  
  
• rRNA processing (GO:0006364)
  [764 PDB entries]
  
  
• chloroplast rRNA processing (GO:1901259)
• cleavage involved in rRNA processing (GO:0000469)
  [7 PDB entries]
  
  
• maturation of 2S rRNA (GO:0000475)
• maturation of 4.5S rRNA (GO:0000476)
• maturation of 5.8S rRNA (GO:0000460)
  [9 PDB entries]
  
  
• maturation of 5S rRNA (GO:0000481)
  [5 PDB entries]
  
  
• maturation of LSU-rRNA (GO:0000470)
  [170 PDB entries]
  
  
• maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA) (GO:0000473)
• maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) (GO:0000488)
• maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (GO:0000463)
  [102 PDB entries]
  
  
• maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) (GO:0002108)
• maturation of SSU-rRNA (GO:0030490)
  [47 PDB entries]
  
  
• maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA) (GO:0000474)
• maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) (GO:0000489)
• maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (GO:0000462)
  [245 PDB entries]
  
  
• maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) (GO:0002109)
  [67 PDB entries]
  
  
• rRNA acetylation involved in maturation of SSU-rRNA (GO:1904812)
• negative regulation of rRNA processing (GO:2000233)
  [12 PDB entries]
  
  
• positive regulation of rRNA processing (GO:2000234)
  [3 PDB entries]
  
  
• regulation of rRNA processing (GO:2000232)
  [9 PDB entries]
  
  
• rRNA 3'-end processing (GO:0031125)
  [10 PDB entries]
  
  
• rRNA 5'-end processing (GO:0000967)
  [19 PDB entries]
  
  
• rRNA modification (GO:0000154)
  [55 PDB entries]
  
  
• snoRNA release from pre-rRNA (GO:1990417)

Click on the GO accession number to get a tree view of the GO hierarchy without information on PDB entries. In this case your query level and all levels of higher hierarchy up to the root level Gene_Ontology (GO:0003673) are displayed.

If you enter the GO tree somewhere and if you want to get a view of the whole tree first click on the GO name. This yields the low-hierarchy part. Then click on the GO accession number of the lowest hierarchical level. This gives a view of the complete tree. Note, that certain GO terms belong to more than one path.

GO2PDB@JenaLib
Tue Jul 9 10:48:17 2019