GO2PDB - JenaLib

Search term(s): GO:0018904

Here you see a subgraph of the complete GO graph, with your query GO:0018904 as the highest hiearchical level and all levels of lower hierarchy. The number of PDB entries, for which a UniProt entry annotated with the corresponding GO term is available, is shown in square brackets for all hiearchical levels of the subgraph.

ether metabolic process (GO:0018904)
- (+)-lariciresinol metabolic process (GO:1902130)
  - (+)-lariciresinol biosynthetic process (GO:1902132)
    [1 PDB entries]
  - (+)-lariciresinol catabolic process (GO:1902131)
- (+)-pinoresinol metabolic process (GO:1902124)
  - (+)-pinoresinol biosynthetic process (GO:1902126)
  - (+)-pinoresinol catabolic process (GO:1902125)
    [1 PDB entries]
- (-)-microperfuranone metabolic process (GO:1901510)
  - (-)-microperfuranone biosynthetic process (GO:1901512)
  - (-)-microperfuranone catabolic process (GO:1901511)
- (-)-pinoresinol metabolic process (GO:1901598)
  - (-)-pinoresinol biosynthetic process (GO:1901599)
    [1 PDB entries]
  - (-)-pinoresinol catabolic process (GO:1902123)
    [1 PDB entries]
- 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one metabolic process (GO:0031147)
  - DIF-1 biosynthetic process (GO:0031148)
- 2,4,5-trichlorophenoxyacetic acid metabolic process (GO:0018980)
  - 2,4,5-trichlorophenoxyacetic acid catabolic process (GO:0046228)
- 2,4-dichlorophenoxyacetic acid metabolic process (GO:0018901)
  - 2,4-dichlorophenoxyacetic acid catabolic process (GO:0046300)
    [2 PDB entries]
- aflatoxin B1 metabolic process (GO:0043390)
- coniferin metabolic process (GO:0033491)
- cordyol C metabolic process (GO:1900797)
  - cordyol C biosynthetic process (GO:1900799)
    - negative regulation of cordyol C biosynthetic process (GO:1900862)
    - positive regulation of cordyol C biosynthetic process (GO:1900863)
    - regulation of cordyol C biosynthetic process (GO:1900861)
  - cordyol C catabolic process (GO:1900798)
- curcumin metabolic process (GO:0036039)
  - curcumin catabolic process (GO:0036040)
- dimethyl ether metabolic process (GO:0018905)
- diorcinol metabolic process (GO:1900570)
  - diorcinol biosynthetic process (GO:1900572)
    - negative regulation of diorcinol biosynthetic process (GO:1900656)
    - positive regulation of diorcinol biosynthetic process (GO:1900657)
    - regulation of diorcinol biosynthetic process (GO:1900655)
  - diorcinol catabolic process (GO:1900571)
- emericellin metabolic process (GO:1900764)
  - emericellin biosynthetic process (GO:1900766)
    - negative regulation of emericellin biosynthetic process (GO:1900835)
    - positive regulation of emericellin biosynthetic process (GO:1900836)
    - regulation of emericellin biosynthetic process (GO:1900834)
  - emericellin catabolic process (GO:1900765)
- epoxide metabolic process (GO:0097176)
  [1 PDB entries]
- ether biosynthetic process (GO:1901503)
  - (+)-lariciresinol biosynthetic process (GO:1902132)
    [1 PDB entries]
  - (+)-pinoresinol biosynthetic process (GO:1902126)
  - (-)-microperfuranone biosynthetic process (GO:1901512)
  - (-)-pinoresinol biosynthetic process (GO:1901599)
    [1 PDB entries]
  - 1,5-anhydro-D-fructose biosynthetic process (GO:1901803)
  - all-trans-neoxanthin biosynthetic process (GO:1901833)
  - cordyol C biosynthetic process (GO:1900799)
    - negative regulation of cordyol C biosynthetic process (GO:1900862)
    - positive regulation of cordyol C biosynthetic process (GO:1900863)
    - regulation of cordyol C biosynthetic process (GO:1900861)
  - DIF-1 biosynthetic process (GO:0031148)
  - diorcinol biosynthetic process (GO:1900572)
    - negative regulation of diorcinol biosynthetic process (GO:1900656)
    - positive regulation of diorcinol biosynthetic process (GO:1900657)
    - regulation of diorcinol biosynthetic process (GO:1900655)
  - emericellin biosynthetic process (GO:1900766)
    - negative regulation of emericellin biosynthetic process (GO:1900835)
    - positive regulation of emericellin biosynthetic process (GO:1900836)
    - regulation of emericellin biosynthetic process (GO:1900834)
  - eugenol biosynthetic process (GO:0042855)
  - ferulate biosynthetic process (GO:0033495)
  - fonsecin biosynthetic process (GO:1900769)
  - fumagillin biosynthetic process (GO:1902086)
    - negative regulation of fumagillin biosynthetic process (GO:1902091)
    - positive regulation of fumagillin biosynthetic process (GO:1902092)
    - regulation of fumagillin biosynthetic process (GO:1902090)
  - gerfelin biosynthetic process (GO:1900578)
    - negative regulation of gerfelin biosynthetic process (GO:1900687)
    - positive regulation of gerfelin biosynthetic process (GO:1900688)
    - regulation of gerfelin biosynthetic process (GO:1900686)
  - glycerol ether biosynthetic process (GO:0046504)
    - ether lipid biosynthetic process (GO:0008611)
      [10 PDB entries]
  - leukotriene A4 biosynthetic process (GO:1901753)
  - novobiocin biosynthetic process (GO:0043642)
    [3 PDB entries]
  - pentalenolactone biosynthetic process (GO:1901780)
    [9 PDB entries]
  - scopolamine biosynthetic process (GO:1900991)
  - sinapate biosynthetic process (GO:0033497)
  - spheroidene biosynthetic process (GO:1901180)
  - vanillin biosynthetic process (GO:0042189)
  - verruculogen biosynthetic process (GO:1902181)
    [3 PDB entries]
  - violaceol I biosynthetic process (GO:1900590)
    - negative regulation of violaceol I biosynthetic process (GO:1900714)
    - positive regulation of violaceol I biosynthetic process (GO:1900715)
    - regulation of violaceol I biosynthetic process (GO:1900713)
  - violaceol II biosynthetic process (GO:1900593)
    - negative regulation of violaceol II biosynthetic process (GO:1900717)
    - positive regulation of violaceol II biosynthetic process (GO:1900718)
    - regulation of violaceol II biosynthetic process (GO:1900716)
- ether catabolic process (GO:1901502)
  - (+)-lariciresinol catabolic process (GO:1902131)
  - (+)-pinoresinol catabolic process (GO:1902125)
    [1 PDB entries]
  - (-)-microperfuranone catabolic process (GO:1901511)
  - (-)-pinoresinol catabolic process (GO:1902123)
    [1 PDB entries]
  - 1,5-anhydro-D-fructose catabolic process (GO:1901802)
  - 2,4,5-trichlorophenoxyacetic acid catabolic process (GO:0046228)
  - 2,4-dichlorophenoxyacetic acid catabolic process (GO:0046300)
    [2 PDB entries]
  - 6-hydroxycineole catabolic process (GO:0019639)
  - all-trans-neoxanthin catabolic process (GO:1901832)
  - cordyol C catabolic process (GO:1900798)
  - curcumin catabolic process (GO:0036040)
  - diorcinol catabolic process (GO:1900571)
  - emericellin catabolic process (GO:1900765)
  - eugenol catabolic process (GO:0042856)
  - ferulate catabolic process (GO:1901067)
    - negative regulation of ferulate catabolic process (GO:1901467)
    - positive regulation of ferulate catabolic process (GO:1901468)
    - regulation of ferulate catabolic process (GO:1901466)
  - fonsecin catabolic process (GO:1900768)
  - fumagillin catabolic process (GO:1902085)
  - gerfelin catabolic process (GO:1900577)
  - glycerol ether catabolic process (GO:0044269)
  - leukotriene A4 catabolic process (GO:1901752)
  - pentalenolactone catabolic process (GO:1901779)
  - scopolamine catabolic process (GO:1900990)
  - spheroidene catabolic process (GO:1901179)
  - vanillin catabolic process (GO:0042190)
  - verruculogen catabolic process (GO:1902180)
  - violaceol I catabolic process (GO:1900589)
  - violaceol II catabolic process (GO:1900592)
- eugenol metabolic process (GO:0042854)
  - eugenol biosynthetic process (GO:0042855)
  - eugenol catabolic process (GO:0042856)
- ferulate metabolic process (GO:0033494)
  [10 PDB entries]
- fonsecin metabolic process (GO:1900767)
  - fonsecin biosynthetic process (GO:1900769)
  - fonsecin catabolic process (GO:1900768)
- gerfelin metabolic process (GO:1900576)
  - gerfelin biosynthetic process (GO:1900578)
    - negative regulation of gerfelin biosynthetic process (GO:1900687)
    - positive regulation of gerfelin biosynthetic process (GO:1900688)
    - regulation of gerfelin biosynthetic process (GO:1900686)
  - gerfelin catabolic process (GO:1900577)
- glycerol ether metabolic process (GO:0006662)
  [213 PDB entries]
- methyl tert-butyl ether metabolic process (GO:0018906)
- novobiocin metabolic process (GO:0043641)
  - novobiocin biosynthetic process (GO:0043642)
    [3 PDB entries]
- sinapate metabolic process (GO:0033496)
  - sinapate biosynthetic process (GO:0033497)
- spheroidene metabolic process (GO:1901178)
  - spheroidene biosynthetic process (GO:1901180)
  - spheroidene catabolic process (GO:1901179)
- vanillin metabolic process (GO:0018982)
  - vanillin biosynthetic process (GO:0042189)
  - vanillin catabolic process (GO:0042190)
- verruculogen metabolic process (GO:1902179)
  - verruculogen biosynthetic process (GO:1902181)
    [3 PDB entries]
  - verruculogen catabolic process (GO:1902180)
- violaceol I metabolic process (GO:1900588)
  - violaceol I biosynthetic process (GO:1900590)
    - negative regulation of violaceol I biosynthetic process (GO:1900714)
    - positive regulation of violaceol I biosynthetic process (GO:1900715)
    - regulation of violaceol I biosynthetic process (GO:1900713)
  - violaceol I catabolic process (GO:1900589)
- violaceol II metabolic process (GO:1900591)
  - violaceol II biosynthetic process (GO:1900593)
    - negative regulation of violaceol II biosynthetic process (GO:1900717)
    - positive regulation of violaceol II biosynthetic process (GO:1900718)
    - regulation of violaceol II biosynthetic process (GO:1900716)
  - violaceol II catabolic process (GO:1900592)

Click on the GO accession number to get a tree view of the GO hierarchy without information on PDB entries. In this case your query level and all levels of higher hierarchy up to the root level Gene_Ontology (GO:0003673) are displayed.

If you enter the GO tree somewhere and if you want to get a view of the whole tree first click on the GO name. This yields the low-hierarchy part. Then click on the GO accession number of the lowest hierarchical level. This gives a view of the complete tree. Note, that certain GO terms belong to more than one path.

GO2PDB@JenaLib
Tue Jul 9 10:48:17 2019