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   Search term(s): GO:0006553

Here you see a subgraph of the complete GO graph, with your query GO:0006553 as the highest hiearchical level and all levels of lower hierarchy. The number of PDB entries, for which a UniProt entry annotated with the corresponding GO term is available, is shown in square brackets for all hiearchical levels of the subgraph.

• lysine metabolic process (GO:0006553)
  • D-lysine metabolic process (GO:0046441)
    • D-lysine catabolic process (GO:0019476)
  • L-lysine metabolic process (GO:0046440)
    • L-lysine catabolic process (GO:0019477)
      [5 PDB entries]
      
      
    • L-lysine catabolic process to acetate (GO:0019475)
      [15 PDB entries]
      
      
    • L-lysine catabolic process to acetyl-CoA (GO:0019474)
    • L-lysine catabolic process to glutarate, by acetylation (GO:0019473)
  • lysine biosynthetic process (GO:0009085)
    [270 PDB entries]
    
    
  • lysine biosynthetic process via aminoadipic acid (GO:0019878)
    [50 PDB entries]
    
    
  • lysine biosynthetic process via alpha-aminoadipate and N2-acetyl-alpha-aminoadipate (GO:0051976)
  • lysine biosynthetic process via alpha-aminoadipate and saccharopine (GO:0051975)
  • negative regulation of lysine biosynthetic process via aminoadipic acid (GO:1902987)
  • regulation of lysine biosynthetic process via aminoadipic acid (GO:1902986)
  • lysine biosynthetic process via diaminopimelate (GO:0009089)
    [267 PDB entries]
    
    
  • lysine biosynthetic process via diaminopimelate and L-2-acetamido-6-oxoheptanedioate (GO:0033360)
  • lysine biosynthetic process via diaminopimelate and N-succinyl-2-amino-6-ketopimelate (GO:0033359)
    [2 PDB entries]
    
    
  • lysine biosynthetic process via diaminopimelate, dehydrogenase pathway (GO:0033361)
  • lysine biosynthetic process via diaminopimelate, diaminopimelate-aminotransferase pathway (GO:0033362)
    [2 PDB entries]
    
    
  • lysine catabolic process (GO:0006554)
    [45 PDB entries]
    
    
  • D-lysine catabolic process (GO:0019476)
  • L-lysine catabolic process (GO:0019477)
    [5 PDB entries]
    
    
  • L-lysine catabolic process to acetate (GO:0019475)
    [15 PDB entries]
    
    
  • L-lysine catabolic process to acetyl-CoA (GO:0019474)
  • L-lysine catabolic process to glutarate, by acetylation (GO:0019473)

Click on the GO accession number to get a tree view of the GO hierarchy without information on PDB entries. In this case your query level and all levels of higher hierarchy up to the root level Gene_Ontology (GO:0003673) are displayed.

If you enter the GO tree somewhere and if you want to get a view of the whole tree first click on the GO name. This yields the low-hierarchy part. Then click on the GO accession number of the lowest hierarchical level. This gives a view of the complete tree. Note, that certain GO terms belong to more than one path.

GO2PDB@JenaLib
Tue Jul 9 10:48:17 2019