GO2PDB - JenaLib

Search term(s): GO:0006140

Here you see a subgraph of the complete GO graph, with your query GO:0006140 as the highest hiearchical level and all levels of lower hierarchy. The number of PDB entries, for which a UniProt entry annotated with the corresponding GO term is available, is shown in square brackets for all hiearchical levels of the subgraph.

regulation of nucleotide metabolic process (GO:0006140)
- negative regulation of nucleotide metabolic process (GO:0045980)
  [4 PDB entries]
- positive regulation of nucleotide metabolic process (GO:0045981)
  - positive regulation of NAD metabolic process (GO:1902690)
    - positive regulation of 'de novo' NAD biosynthetic process from tryptophan (GO:1905014)
    - positive regulation of glucose catabolic process to lactate via pyruvate (GO:1904025)
      [3 PDB entries]
  - positive regulation of nucleotide biosynthetic process (GO:0030810)
    - positive regulation of 'de novo' NAD biosynthetic process from tryptophan (GO:1905014)
    - positive regulation of purine nucleotide biosynthetic process (GO:1900373)
    - positive regulation of pyrimidine nucleotide biosynthetic process (GO:1900399)
      [1 PDB entries]
  - positive regulation of nucleotide catabolic process (GO:0030813)
    - positive regulation of glucose catabolic process to lactate via pyruvate (GO:1904025)
      [3 PDB entries]
    - positive regulation of glycolytic process (GO:0045821)
      [409 PDB entries]
    - positive regulation of purine nucleotide catabolic process (GO:0033123)
  - positive regulation of pentose-phosphate shunt (GO:1905857)
  - positive regulation of purine nucleotide metabolic process (GO:1900544)
    - positive regulation of ATP metabolic process (GO:1903580)
    - positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway (GO:1900486)
    - positive regulation of purine nucleotide biosynthetic process (GO:1900373)
    - positive regulation of purine nucleotide catabolic process (GO:0033123)
    - positive regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA (GO:1901415)
- regulation of NAD metabolic process (GO:1902688)
  - negative regulation of NAD metabolic process (GO:1902689)
    - negative regulation of 'de novo' NAD biosynthetic process from tryptophan (GO:1905013)
    - negative regulation of glucose catabolic process to lactate via pyruvate (GO:1904024)
      [9 PDB entries]
  - positive regulation of NAD metabolic process (GO:1902690)
    - positive regulation of 'de novo' NAD biosynthetic process from tryptophan (GO:1905014)
    - positive regulation of glucose catabolic process to lactate via pyruvate (GO:1904025)
      [3 PDB entries]
  - regulation of 'de novo' NAD biosynthetic process from tryptophan (GO:1905012)
    [5 PDB entries]
  - regulation of glucose catabolic process to lactate via pyruvate (GO:1904023)
    - negative regulation of glucose catabolic process to lactate via pyruvate (GO:1904024)
      [9 PDB entries]
    - positive regulation of glucose catabolic process to lactate via pyruvate (GO:1904025)
      [3 PDB entries]
- regulation of NADP metabolic process (GO:1902031)
  [12 PDB entries]
- regulation of nucleotide biosynthetic process (GO:0030808)
  - negative regulation of nucleotide biosynthetic process (GO:0030809)
    - negative regulation of 'de novo' NAD biosynthetic process from tryptophan (GO:1905013)
    - negative regulation of purine nucleotide biosynthetic process (GO:1900372)
    - negative regulation of pyrimidine nucleotide biosynthetic process (GO:1900398)
  - positive regulation of nucleotide biosynthetic process (GO:0030810)
    - positive regulation of 'de novo' NAD biosynthetic process from tryptophan (GO:1905014)
    - positive regulation of purine nucleotide biosynthetic process (GO:1900373)
    - positive regulation of pyrimidine nucleotide biosynthetic process (GO:1900399)
      [1 PDB entries]
  - regulation of 'de novo' NAD biosynthetic process from tryptophan (GO:1905012)
    [5 PDB entries]
  - regulation of purine nucleotide biosynthetic process (GO:1900371)
    - negative regulation of purine nucleotide biosynthetic process (GO:1900372)
    - positive regulation of purine nucleotide biosynthetic process (GO:1900373)
    - regulation of acyl-CoA biosynthetic process (GO:0050812)
      [18 PDB entries]
    - regulation of ATP biosynthetic process (GO:2001169)
    - regulation of coenzyme A biosynthetic process (GO:0080020)
    - regulation of guanylate cyclase activity (GO:0031282)
      [3 PDB entries]
  - regulation of pyrimidine nucleotide biosynthetic process (GO:1900397)
    - negative regulation of pyrimidine nucleotide biosynthetic process (GO:1900398)
    - positive regulation of pyrimidine nucleotide biosynthetic process (GO:1900399)
      [1 PDB entries]
    - regulation of dCDP biosynthetic process (GO:1903528)
    - regulation of pyrimidine nucleotide biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900448)
    - regulation of pyrimidine nucleotide biosynthetic process by transcription from RNA polymerase II promoter (GO:0100039)
- regulation of nucleotide catabolic process (GO:0030811)
  - negative regulation of nucleotide catabolic process (GO:0030812)
    - negative regulation of glucose catabolic process to lactate via pyruvate (GO:1904024)
      [9 PDB entries]
    - negative regulation of glycolytic process (GO:0045820)
      [147 PDB entries]
    - negative regulation of purine nucleotide catabolic process (GO:0033122)
  - positive regulation of nucleotide catabolic process (GO:0030813)
    - positive regulation of glucose catabolic process to lactate via pyruvate (GO:1904025)
      [3 PDB entries]
    - positive regulation of glycolytic process (GO:0045821)
      [409 PDB entries]
    - positive regulation of purine nucleotide catabolic process (GO:0033123)
  - regulation of cyclic nucleotide catabolic process (GO:0030805)
  - regulation of glucose catabolic process to lactate via pyruvate (GO:1904023)
    - negative regulation of glucose catabolic process to lactate via pyruvate (GO:1904024)
      [9 PDB entries]
    - positive regulation of glucose catabolic process to lactate via pyruvate (GO:1904025)
      [3 PDB entries]
  - regulation of glycolytic process (GO:0006110)
    [92 PDB entries]
  - regulation of purine nucleotide catabolic process (GO:0033121)
    - negative regulation of purine nucleotide catabolic process (GO:0033122)
    - positive regulation of purine nucleotide catabolic process (GO:0033123)
    - regulation of butyryl-CoA catabolic process to butanol (GO:1900497)
    - regulation of butyryl-CoA catabolic process to butyrate (GO:1900500)
- regulation of purine nucleotide metabolic process (GO:1900542)
  - negative regulation of purine nucleotide metabolic process (GO:1900543)
    - negative regulation of ATP metabolic process (GO:1903579)
      [2 PDB entries]
    - negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway (GO:2001211)
    - negative regulation of purine nucleotide biosynthetic process (GO:1900372)
    - negative regulation of purine nucleotide catabolic process (GO:0033122)
    - negative regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA (GO:1901414)
  - positive regulation of purine nucleotide metabolic process (GO:1900544)
    - positive regulation of ATP metabolic process (GO:1903580)
    - positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway (GO:1900486)
    - positive regulation of purine nucleotide biosynthetic process (GO:1900373)
    - positive regulation of purine nucleotide catabolic process (GO:0033123)
    - positive regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA (GO:1901415)
  - regulation of ATP metabolic process (GO:1903578)
    [6 PDB entries]
  - regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway (GO:2001210)
    - negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway (GO:2001211)
    - positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway (GO:1900486)
  - regulation of purine nucleotide biosynthetic process (GO:1900371)
    - negative regulation of purine nucleotide biosynthetic process (GO:1900372)
    - positive regulation of purine nucleotide biosynthetic process (GO:1900373)
    - regulation of acyl-CoA biosynthetic process (GO:0050812)
      [18 PDB entries]
    - regulation of ATP biosynthetic process (GO:2001169)
    - regulation of coenzyme A biosynthetic process (GO:0080020)
    - regulation of guanylate cyclase activity (GO:0031282)
      [3 PDB entries]
  - regulation of purine nucleotide catabolic process (GO:0033121)
    - negative regulation of purine nucleotide catabolic process (GO:0033122)
    - positive regulation of purine nucleotide catabolic process (GO:0033123)
    - regulation of butyryl-CoA catabolic process to butanol (GO:1900497)
    - regulation of butyryl-CoA catabolic process to butyrate (GO:1900500)
  - regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA (GO:1901413)
    - negative regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA (GO:1901414)
    - positive regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA (GO:1901415)

Click on the GO accession number to get a tree view of the GO hierarchy without information on PDB entries. In this case your query level and all levels of higher hierarchy up to the root level Gene_Ontology (GO:0003673) are displayed.

If you enter the GO tree somewhere and if you want to get a view of the whole tree first click on the GO name. This yields the low-hierarchy part. Then click on the GO accession number of the lowest hierarchical level. This gives a view of the complete tree. Note, that certain GO terms belong to more than one path.

GO2PDB@JenaLib
Tue Jul 9 10:48:17 2019