GO2PDB - JenaLib

Search term(s): GO:0002440

Here you see a subgraph of the complete GO graph, with your query GO:0002440 as the highest hiearchical level and all levels of lower hierarchy. The number of PDB entries, for which a UniProt entry annotated with the corresponding GO term is available, is shown in square brackets for all hiearchical levels of the subgraph.

production of molecular mediator of immune response (GO:0002440)
- antimicrobial peptide production (GO:0002775)
  - antibacterial peptide production (GO:0002778)
    [6 PDB entries]
  - antifungal peptide production (GO:0002781)
    - antifungal peptide biosynthetic process (GO:0002783)
    - antifungal peptide secretion (GO:0002782)
    - negative regulation of antifungal peptide production (GO:0002789)
    - positive regulation of antifungal peptide production (GO:0002804)
    - regulation of antifungal peptide production (GO:0002788)
  - antimicrobial peptide biosynthetic process (GO:0002777)
    - antibacterial peptide biosynthetic process (GO:0002780)
      [2 PDB entries]
    - antifungal peptide biosynthetic process (GO:0002783)
    - negative regulation of antimicrobial peptide biosynthetic process (GO:0002806)
    - positive regulation of antimicrobial peptide biosynthetic process (GO:0002807)
    - regulation of antimicrobial peptide biosynthetic process (GO:0002805)
      [5 PDB entries]
  - antimicrobial peptide secretion (GO:0002776)
    [1 PDB entries]
  - negative regulation of antimicrobial peptide production (GO:0002785)
    - negative regulation of antibacterial peptide production (GO:0002787)
      [5 PDB entries]
    - negative regulation of antifungal peptide production (GO:0002789)
    - negative regulation of antimicrobial peptide biosynthetic process (GO:0002806)
    - negative regulation of antimicrobial peptide secretion (GO:0002795)
  - positive regulation of antimicrobial peptide production (GO:0002225)
    - positive regulation of antibacterial peptide production (GO:0002803)
      [10 PDB entries]
    - positive regulation of antifungal peptide production (GO:0002804)
    - positive regulation of antimicrobial peptide biosynthetic process (GO:0002807)
    - positive regulation of antimicrobial peptide secretion (GO:0002796)
  - regulation of antimicrobial peptide production (GO:0002784)
    - negative regulation of antimicrobial peptide production (GO:0002785)
      - negative regulation of antibacterial peptide production (GO:0002787)
        [5 PDB entries]
      - negative regulation of antifungal peptide production (GO:0002789)
      - negative regulation of antimicrobial peptide biosynthetic process (GO:0002806)
      - negative regulation of antimicrobial peptide secretion (GO:0002795)
    - positive regulation of antimicrobial peptide production (GO:0002225)
      - positive regulation of antibacterial peptide production (GO:0002803)
        [10 PDB entries]
      - positive regulation of antifungal peptide production (GO:0002804)
      - positive regulation of antimicrobial peptide biosynthetic process (GO:0002807)
      - positive regulation of antimicrobial peptide secretion (GO:0002796)
    - regulation of antibacterial peptide production (GO:0002786)
    - regulation of antifungal peptide production (GO:0002788)
    - regulation of antimicrobial peptide biosynthetic process (GO:0002805)
      [5 PDB entries]
    - regulation of antimicrobial peptide secretion (GO:0002794)
- cytokine production involved in immune response (GO:0002367)
  [38 PDB entries]
- granulysin production (GO:0036262)
- granzyme A production (GO:0035746)
  - negative regulation of granzyme A production (GO:2000512)
  - positive regulation of granzyme A production (GO:2000513)
    [6 PDB entries]
  - regulation of granzyme A production (GO:2000511)
    - negative regulation of granzyme A production (GO:2000512)
    - positive regulation of granzyme A production (GO:2000513)
      [6 PDB entries]
- granzyme B production (GO:0071613)
  - negative regulation of granzyme B production (GO:0071662)
  - positive regulation of granzyme B production (GO:0071663)
    [10 PDB entries]
  - regulation of granzyme B production (GO:0071661)
    - negative regulation of granzyme B production (GO:0071662)
    - positive regulation of granzyme B production (GO:0071663)
      [10 PDB entries]
- immunoglobulin production (GO:0002377)
  [48 PDB entries]
- negative regulation of production of molecular mediator of immune response (GO:0002701)
  - negative regulation of antimicrobial peptide production (GO:0002785)
    - negative regulation of antibacterial peptide production (GO:0002787)
      [5 PDB entries]
    - negative regulation of antifungal peptide production (GO:0002789)
    - negative regulation of antimicrobial peptide biosynthetic process (GO:0002806)
    - negative regulation of antimicrobial peptide secretion (GO:0002795)
  - negative regulation of cytokine production involved in immune response (GO:0002719)
    - negative regulation of B cell cytokine production (GO:0002722)
    - negative regulation of cytokine biosynthetic process involved in immune response (GO:0002743)
    - negative regulation of cytokine secretion involved in immune response (GO:0002740)
      [55 PDB entries]
    - negative regulation of dendritic cell cytokine production (GO:0002731)
      [23 PDB entries]
    - negative regulation of macrophage cytokine production (GO:0010936)
      [19 PDB entries]
    - negative regulation of mast cell cytokine production (GO:0032764)
      [75 PDB entries]
    - negative regulation of natural killer cell cytokine production (GO:0002728)
    - negative regulation of T cell cytokine production (GO:0002725)
      [22 PDB entries]
  - negative regulation of granzyme A production (GO:2000512)
  - negative regulation of granzyme B production (GO:0071662)
  - negative regulation of immunoglobulin production (GO:0002638)
    [2 PDB entries]
- perforin production (GO:0035944)
- positive regulation of production of molecular mediator of immune response (GO:0002702)
  - positive regulation of antimicrobial peptide production (GO:0002225)
    - positive regulation of antibacterial peptide production (GO:0002803)
      [10 PDB entries]
    - positive regulation of antifungal peptide production (GO:0002804)
    - positive regulation of antimicrobial peptide biosynthetic process (GO:0002807)
    - positive regulation of antimicrobial peptide secretion (GO:0002796)
  - positive regulation of cytokine production involved in immune response (GO:0002720)
    [1 PDB entries]
  - positive regulation of granzyme A production (GO:2000513)
    [6 PDB entries]
  - positive regulation of granzyme B production (GO:0071663)
    [10 PDB entries]
  - positive regulation of immunoglobulin production (GO:0002639)
    [43 PDB entries]
  - positive regulation of prostaglandin secretion involved in immune response (GO:0061078)
    [76 PDB entries]
- prostaglandin secretion involved in immune response (GO:0090323)
  - positive regulation of prostaglandin secretion involved in immune response (GO:0061078)
    [76 PDB entries]
- regulation of production of molecular mediator of immune response (GO:0002700)
  - negative regulation of production of molecular mediator of immune response (GO:0002701)
    - negative regulation of antimicrobial peptide production (GO:0002785)
      - negative regulation of antibacterial peptide production (GO:0002787)
        [5 PDB entries]
      - negative regulation of antifungal peptide production (GO:0002789)
      - negative regulation of antimicrobial peptide biosynthetic process (GO:0002806)
      - negative regulation of antimicrobial peptide secretion (GO:0002795)
    - negative regulation of cytokine production involved in immune response (GO:0002719)
      - negative regulation of B cell cytokine production (GO:0002722)
      - negative regulation of cytokine biosynthetic process involved in immune response (GO:0002743)
      - negative regulation of cytokine secretion involved in immune response (GO:0002740)
        [55 PDB entries]
      - negative regulation of dendritic cell cytokine production (GO:0002731)
        [23 PDB entries]
      - negative regulation of macrophage cytokine production (GO:0010936)
        [19 PDB entries]
      - negative regulation of mast cell cytokine production (GO:0032764)
        [75 PDB entries]
      - negative regulation of natural killer cell cytokine production (GO:0002728)
      - negative regulation of T cell cytokine production (GO:0002725)
        [22 PDB entries]
    - negative regulation of granzyme A production (GO:2000512)
    - negative regulation of granzyme B production (GO:0071662)
    - negative regulation of immunoglobulin production (GO:0002638)
      [2 PDB entries]
  - positive regulation of production of molecular mediator of immune response (GO:0002702)
    - positive regulation of antimicrobial peptide production (GO:0002225)
      - positive regulation of antibacterial peptide production (GO:0002803)
        [10 PDB entries]
      - positive regulation of antifungal peptide production (GO:0002804)
      - positive regulation of antimicrobial peptide biosynthetic process (GO:0002807)
      - positive regulation of antimicrobial peptide secretion (GO:0002796)
    - positive regulation of cytokine production involved in immune response (GO:0002720)
      [1 PDB entries]
    - positive regulation of granzyme A production (GO:2000513)
      [6 PDB entries]
    - positive regulation of granzyme B production (GO:0071663)
      [10 PDB entries]
    - positive regulation of immunoglobulin production (GO:0002639)
      [43 PDB entries]
    - positive regulation of prostaglandin secretion involved in immune response (GO:0061078)
      [76 PDB entries]
  - regulation of antimicrobial peptide production (GO:0002784)
    - negative regulation of antimicrobial peptide production (GO:0002785)
      - negative regulation of antibacterial peptide production (GO:0002787)
        [5 PDB entries]
      - negative regulation of antifungal peptide production (GO:0002789)
      - negative regulation of antimicrobial peptide biosynthetic process (GO:0002806)
      - negative regulation of antimicrobial peptide secretion (GO:0002795)
    - positive regulation of antimicrobial peptide production (GO:0002225)
      - positive regulation of antibacterial peptide production (GO:0002803)
        [10 PDB entries]
      - positive regulation of antifungal peptide production (GO:0002804)
      - positive regulation of antimicrobial peptide biosynthetic process (GO:0002807)
      - positive regulation of antimicrobial peptide secretion (GO:0002796)
    - regulation of antibacterial peptide production (GO:0002786)
    - regulation of antifungal peptide production (GO:0002788)
    - regulation of antimicrobial peptide biosynthetic process (GO:0002805)
      [5 PDB entries]
    - regulation of antimicrobial peptide secretion (GO:0002794)
  - regulation of cytokine production involved in immune response (GO:0002718)
    - negative regulation of cytokine production involved in immune response (GO:0002719)
      - negative regulation of B cell cytokine production (GO:0002722)
      - negative regulation of cytokine biosynthetic process involved in immune response (GO:0002743)
      - negative regulation of cytokine secretion involved in immune response (GO:0002740)
        [55 PDB entries]
      - negative regulation of dendritic cell cytokine production (GO:0002731)
        [23 PDB entries]
      - negative regulation of macrophage cytokine production (GO:0010936)
        [19 PDB entries]
      - negative regulation of mast cell cytokine production (GO:0032764)
        [75 PDB entries]
      - negative regulation of natural killer cell cytokine production (GO:0002728)
      - negative regulation of T cell cytokine production (GO:0002725)
        [22 PDB entries]
    - positive regulation of cytokine production involved in immune response (GO:0002720)
      [1 PDB entries]
    - regulation of B cell cytokine production (GO:0002721)
      [52 PDB entries]
    - regulation of cytokine biosynthetic process involved in immune response (GO:0002742)
    - regulation of cytokine secretion involved in immune response (GO:0002739)
      [6 PDB entries]
    - regulation of dendritic cell cytokine production (GO:0002730)
      [42 PDB entries]
    - regulation of macrophage cytokine production (GO:0010935)
    - regulation of mast cell cytokine production (GO:0032763)
    - regulation of natural killer cell cytokine production (GO:0002727)
    - regulation of T cell cytokine production (GO:0002724)
      [4 PDB entries]
  - regulation of granzyme A production (GO:2000511)
    - negative regulation of granzyme A production (GO:2000512)
    - positive regulation of granzyme A production (GO:2000513)
      [6 PDB entries]
  - regulation of granzyme B production (GO:0071661)
    - negative regulation of granzyme B production (GO:0071662)
    - positive regulation of granzyme B production (GO:0071663)
      [10 PDB entries]
  - regulation of immunoglobulin production (GO:0002637)
    [12 PDB entries]

Click on the GO accession number to get a tree view of the GO hierarchy without information on PDB entries. In this case your query level and all levels of higher hierarchy up to the root level Gene_Ontology (GO:0003673) are displayed.

If you enter the GO tree somewhere and if you want to get a view of the whole tree first click on the GO name. This yields the low-hierarchy part. Then click on the GO accession number of the lowest hierarchical level. This gives a view of the complete tree. Note, that certain GO terms belong to more than one path.

GO2PDB@JenaLib
Tue Jul 9 10:48:17 2019