| GO Term Name | (GO Accession Number) | Term Type | Definition |
| actin cortical patch assembly | (GO:0000147) | biological_process | Assembly of an actin cortical patch, a discrete actin-containing structure found at the plasma membrane of fungal cells. |
| obsolete dynactin motor | (GO:0003778) | molecular_function | OBSOLETE (was not defined before being made obsolete). This term was made obsolete because the dynactin complex is not a motor as such, but does regulate the dynein motor complex. |
| actin binding | (GO:0003779) | molecular_function | Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments. |
| obsolete actin cross-linking activity | (GO:0003780) | molecular_function | OBSOLETE. Interacting selectively with two actin filaments to anchor them together. This term was made obsolete because it represents a combination of molecular functions. |
| actin filament binding | (GO:0051015) | molecular_function | Interacting selectively and non-covalently with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits. |
| obsolete actin bundling activity | (GO:0003781) | molecular_function | OBSOLETE (was not defined before being made obsolete). This term was made obsolete because it represents a biological process. |
| actin filament bundle assembly | (GO:0051017) | biological_process | The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness. |
| obsolete F-actin capping activity | (GO:0003782) | molecular_function | OBSOLETE (was not defined before being made obsolete). This term was made obsolete because it describes a biological process. |
| barbed-end actin filament capping | (GO:0051016) | biological_process | The binding of a protein or protein complex to the barbed (or plus) end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits. |
| obsolete barbed-end actin capping activity | (GO:0003783) | molecular_function | OBSOLETE (was not defined before being made obsolete). This term was made obsolete because it describes a biological process. |
| obsolete barbed-end actin capping/severing activity | (GO:0003784) | molecular_function | OBSOLETE (was not defined before being made obsolete). This term was made obsolete because it describes two biological processes. |
| actin filament severing | (GO:0051014) | biological_process | The process in which an actin filament is broken down into smaller filaments. |
| actin monomer binding | (GO:0003785) | molecular_function | Interacting selectively and non-covalently with monomeric actin, also known as G-actin. |
| actin lateral binding | (GO:0003786) | molecular_function | Interacting selectively and non-covalently with an actin filament along its length. |
| obsolete actin depolymerizing activity | (GO:0003787) | molecular_function | OBSOLETE (was not defined before being made obsolete). This term was made obsolete because it represents a biological process. |
| actin filament depolymerization | (GO:0030042) | biological_process | Disassembly of actin filaments by the removal of actin monomers from a filament. |
| obsolete actin monomer sequestering activity | (GO:0003788) | molecular_function | OBSOLETE (was not defined before being made obsolete). This term was made obsolete because sequestering is a process, not an activity. |
| sequestering of actin monomers | (GO:0042989) | biological_process | The selective interaction of actin monomers with specific molecules that inhibit their polymerization by preventing their access to other monomers. |
| obsolete actin filament severing activity | (GO:0003789) | molecular_function | OBSOLETE (was not defined before being made obsolete). This term was made obsolete because it describes a biological process. |
| obsolete actin modulating activity | (GO:0003790) | molecular_function | OBSOLETE (was not defined before being made obsolete). This term was made obsolete because it does not make sense. |
| actin cytoskeleton organization | (GO:0030036) | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins. |
| obsolete membrane associated actin binding | (GO:0003791) | molecular_function | OBSOLETE (was not defined before being made obsolete). This term was made obsolete because it contains both component and function information. |
| obsolete regulation of actin thin filament length activity | (GO:0003792) | molecular_function | OBSOLETE (was not defined before being made obsolete). This term was made obsolete because the term belongs in the process ontology. |
| regulation of actin filament length | (GO:0030832) | biological_process | Any process that controls the length of actin filaments in a cell. |
| obsolete MHC-interacting protein | (GO:0003822) | molecular_function | OBSOLETE (was not defined before being made obsolete). This term was made obsolete because it represents a gene product. |
| cytochrome-b5 reductase activity, acting on NAD(P)H | (GO:0004128) | molecular_function | Catalysis of the reaction: NAD(P)H + H+ + 2 ferricytochrome b(5) = NAD(P)+ + 2 ferrocytochrome b(5). |
| lysine N-acetyltransferase activity, acting on acetyl phosphate as donor | (GO:0004468) | molecular_function | Catalysis of the reaction: acetyl phosphate + L-lysine = phosphate + N6-acetyl-L-lysine. |
| prolactin receptor activity | (GO:0004925) | molecular_function | Combining with prolactin and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. |
| obsolete death receptor interacting protein activity | (GO:0005038) | molecular_function | OBSOLETE (was not defined before being made obsolete). This term was made obsolete because it represents a gene product and not a molecular function. |
| prolactin receptor binding | (GO:0005148) | molecular_function | Interacting selectively and non-covalently with the prolactin receptor. |
| dynactin complex | (GO:0005869) | cellular_component | A 20S multiprotein assembly of total mass about 1.2 MDa that activates dynein-based activity in vivo. A large structural component of the complex is an actin-like 40 nm filament composed of actin-related protein, to which other components attach. |
| actin capping protein of dynactin complex | (GO:0005870) | cellular_component | A heterodimer consisting of alpha and beta subunits that binds to and caps the barbed ends of actin filaments, nucleates the polymerization of actin monomers but does not sever actin filaments, and which is a part of the dynactin complex. |
| actin filament | (GO:0005884) | cellular_component | A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane. |
| actin ubiquitination | (GO:0007014) | biological_process | The modification of actin by addition of ubiquitin groups. |
| actin filament organization | (GO:0007015) | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking. |
| regulation of actin polymerization or depolymerization | (GO:0008064) | biological_process | Any process that modulates the frequency, rate or extent of the assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament. |
| obsolete actinidain activity | (GO:0008129) | molecular_function | OBSOLETE. Catalysis of the hydrolysis of proteins with broad specificity for peptide bonds, with preference for a residue bearing a large hydrophobic side chain at the P2 position. Does not accept Val at P1'. This term was made obsolete because it represents a gene product. |
| actin polymerization or depolymerization | (GO:0008154) | biological_process | Assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament. |
| F-actin capping protein complex | (GO:0008290) | cellular_component | A heterodimer consisting of alpha and beta subunits that binds to and caps the barbed ends of actin filaments, thereby regulating the polymerization of actin monomers but not severing actin filaments. |
| female germline ring canal formation, actin assembly | (GO:0008302) | biological_process | Recruitment and organization of actin filaments in female germline ring canals. |
| oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor | (GO:0016682) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a diphenol, or related compound, acts as a hydrogen or electron donor and reduces oxygen. |
| actin filament-based movement | (GO:0030048) | biological_process | Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins. |
| obsolete actin polymerizing activity | (GO:0008651) | molecular_function | OBSOLETE (was not defined before being made obsolete). This term was made obsolete because it represents a biological process. |
| actin filament polymerization | (GO:0030041) | biological_process | Assembly of actin filaments by the addition of actin monomers to a filament. |
| oxidoreductase activity, acting on NAD(P)H | (GO:0016651) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. |
| obsolete enterobactin synthetase | (GO:0008848) | molecular_function | OBSOLETE (was not defined before being made obsolete). This term was made obsolete because it represents a process rather than a function. |
| enterobactin biosynthetic process | (GO:0009239) | biological_process | The chemical reactions and pathways resulting in the formation of enterobactin, a catechol-derived siderochrome of Enterobacteria; enterobactin (N',N',N''-(2,6,10-trioxo-1,5,9-triacyclodecane-3,7,11-triyl)tris(2,3-dihydroxy)benzamide) is a self-triester of 2,3-dihydroxy-N-benzoyl-L-serine and a product of the shikimate pathway. |
| enterobactin metabolic process | (GO:0009238) | biological_process | The chemical reactions and pathways involving enterobactin, a catechol-derived siderochrome of Enterobacteria; enterobactin (N',N',N''-(2,6,10-trioxo-1,5,9-triacyclodecane-3,7,11-triyl)tris(2,3-dihydroxy)benzamide) is a self-triester of 2,3-dihydroxy-N-benzoyl-L-serine and a product of the shikimate pathway. |
| enterobactin synthetase complex | (GO:0009366) | cellular_component | A multienzyme complex usually composed of four proteins, EntB, EntD, EntE and EntF. Plays a role in the enterobactin biosynthesis pathway. |
| peptidase activity, acting on L-amino acid peptides | (GO:0070011) | molecular_function | Catalysis of the hydrolysis of peptide bonds formed between L-amino acids. |
| ferric enterobactin:proton symporter activity | (GO:0015345) | molecular_function | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ferric enterobactin(out) + H+(out) = ferric enterobactin(in) + H+(in). |
| ferric-enterobactin transmembrane transporter activity | (GO:0015620) | molecular_function | Enables the transfer of ferric-enterobactin from one side of a membrane to the other. |
| ferric-enterobactin-transporting ATPase activity | (GO:0015624) | molecular_function | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + ferric-enterobactin(out) = ADP + phosphate + ferric-enterobactin(in). |
| actin cytoskeleton | (GO:0015629) | cellular_component | The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes. |
| ferric-enterobactin transport | (GO:0015685) | biological_process | The directed movement of ferric-enterobactin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
| oxidoreductase activity, acting on CH-OH group of donors | (GO:0016614) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. |
| oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | (GO:0016616) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. |
| oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | (GO:0016620) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP. |
| oxidoreductase activity, acting on the aldehyde or oxo group of donors, cytochrome as acceptor | (GO:0016622) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a cytochrome. |
| oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor | (GO:0016623) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces oxygen. |
| oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor | (GO:0016624) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a disulfide. |
| oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor | (GO:0016625) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces an iron-sulfur protein. |
| obsolete oxidoreductase activity, acting on the aldehyde or oxo group of donors, other acceptors | (GO:0016626) | molecular_function | OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces an acceptor other than NAD, NADP, oxygen, an iron-sulfur protein, disulphide or a cytochrome. This term was made obsolete because it was an unnecessary grouping term. |
| oxidoreductase activity, acting on the aldehyde or oxo group of donors | (GO:0016903) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. |
| oxidoreductase activity, acting on the CH-CH group of donors | (GO:0016627) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. |
| oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | (GO:0016628) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces NAD or NADP. |
| oxidoreductase activity, acting on the CH-CH group of donors, cytochrome as acceptor | (GO:0016632) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a cytochrome. |
| oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor | (GO:0016634) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces oxygen. |
| oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor | (GO:0016635) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a quinone or related compound. |
| oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor | (GO:0016636) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces an iron-sulfur protein. |
| obsolete oxidoreductase activity, acting on the CH-CH group of donors, other acceptors | (GO:0016637) | molecular_function | OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces an acceptor other than quinone or related compound, a cytochrome, an iron-sulfur protein, NAD, NADP or oxygen. This term was made obsolete because it was an unnecessary grouping term. |
| oxidoreductase activity, acting on the CH-NH2 group of donors | (GO:0016638) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. |
| oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor | (GO:0016639) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces NAD+ or NADP. |
| oxidoreductase activity, acting on the CH-NH2 group of donors, cytochrome as acceptor | (GO:0016640) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces a cytochrome molecule. |
| oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor | (GO:0016641) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces an oxygen molecule. |
| oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor | (GO:0016642) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces a disulfide group. |
| oxidoreductase activity, acting on the CH-NH2 group of donors, iron-sulfur protein as acceptor | (GO:0016643) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces an iron-sulfur protein. |
| obsolete oxidoreductase activity, acting on the CH-NH2 group of donors, other acceptors | (GO:0016644) | molecular_function | OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces an acceptor other than a cytochrome, disulfide, an iron-sulfur protein, NAD, NADP or oxygen. This term was made obsolete because it was an unnecessary grouping term. |
| oxidoreductase activity, acting on the CH-NH group of donors | (GO:0016645) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. |
| oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor | (GO:0016646) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH group acts as a hydrogen or electron donor and reduces NAD or NADP. |
| oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor | (GO:0016647) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH group acts as a hydrogen or electron donor and reduces oxygen. |
| oxidoreductase activity, acting on the CH-NH group of donors, disulfide as acceptor | (GO:0016648) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH group acts as a hydrogen or electron donor and reduces disulfide. |
| oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor | (GO:0016649) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH group acts as a hydrogen or electron donor and reduces quinone or similar compound. |
| obsolete oxidoreductase activity, acting on the CH-NH group of donors, other acceptors | (GO:0016650) | molecular_function | OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH group acts as a hydrogen or electron donor and reduces an acceptor other than quinone or similar compound, disulfide, NAD, NADP, oxygen or a flavin. This term was made obsolete because it was an unnecessary grouping term. |
| oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor | (GO:0016652) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces NAD+ or NADP. |
| oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor | (GO:0016653) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a heme protein. |
| oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | (GO:0016655) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a quinone or a similar acceptor molecule. |
| oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor | (GO:0016657) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a nitrogenous group. |
| obsolete oxidoreductase activity, acting on NADH or NADPH, flavin as acceptor | (GO:0016658) | molecular_function | OBSOLETE (was not defined before being made obsolete). This term was made obsolete because it was a grouping term taken from EC that no longer has any functions associated with it. |
| obsolete oxidoreductase activity, acting on NADH or NADPH, other acceptor | (GO:0016659) | molecular_function | OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces an acceptor other than disulfide, a heme protein, NAD, NADP, a nitrogenous group, a quinone or similar compound or oxygen. This term was made obsolete because it was an unnecessary grouping term. |
| oxidoreductase activity, acting on other nitrogenous compounds as donors | (GO:0016661) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. |
| oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor | (GO:0016662) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces a cytochrome. |
| oxidoreductase activity, acting on other nitrogenous compounds as donors, oxygen as acceptor | (GO:0016663) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces oxygen. |
| oxidoreductase activity, acting on other nitrogenous compounds as donors, iron-sulfur protein as acceptor | (GO:0016664) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces an iron-sulfur protein. |
| obsolete oxidoreductase activity, acting on other nitrogenous compounds as donors, other acceptors | (GO:0016665) | molecular_function | OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces an acceptor other than a cytochrome, an iron-sulfur protein, oxygen, NAD or NADP. This term was made obsolete because it was an unnecessary grouping term. |
| oxidoreductase activity, acting on a sulfur group of donors | (GO:0016667) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. |
| oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor | (GO:0016668) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces NAD or NADP. |
| oxidoreductase activity, acting on a sulfur group of donors, cytochrome as acceptor | (GO:0016669) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces a cytochrome. |
| oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor | (GO:0016670) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces oxygen. |
| oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | (GO:0016671) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces disulfide. |
| oxidoreductase activity, acting on a sulfur group of donors, quinone or similar compound as acceptor | (GO:0016672) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces quinone or a related compound. |
| oxidoreductase activity, acting on a sulfur group of donors, iron-sulfur protein as acceptor | (GO:0016673) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces an iron-sulfur protein. |
| obsolete oxidoreductase activity, acting on sulfur group of donors, other acceptors | (GO:0016674) | molecular_function | OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces an acceptor other than quinone or a related compound, oxygen, NAD, NADP, an iron-sulfur protein, disulfide or a cytochrome. This term was made obsolete because it was an unnecessary grouping term. |
| oxidoreductase activity, acting on a heme group of donors | (GO:0016675) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a heme group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. |
| oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor | (GO:0016676) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a heme group acts as a hydrogen or electron donor and reduces oxygen. |
| oxidoreductase activity, acting on a heme group of donors, nitrogenous group as acceptor | (GO:0016677) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a heme group acts as a hydrogen or electron donor and reduces a nitrogenous group. |
| obsolete oxidoreductase activity, acting on heme group of donors, other acceptors | (GO:0016678) | molecular_function | OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a heme group acts as a hydrogen or electron donor and reduces an acceptor other than a nitrogenous group or oxygen. This term was made obsolete because it was an unnecessary grouping term. |
| oxidoreductase activity, acting on diphenols and related substances as donors | (GO:0016679) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a diphenol or related substance acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. |
| oxidoreductase activity, acting on diphenols and related substances as donors, NAD or NADP as acceptor | (GO:0016680) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a diphenol, or related compound, acts as a hydrogen or electron donor and reduces NAD or NADP. |
| oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor | (GO:0016681) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a diphenol, or related compound, acts as a hydrogen or electron donor and reduces a cytochrome. |
| obsolete oxidoreductase activity, acting on diphenols and related substances as donors, other acceptors | (GO:0016683) | molecular_function | OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a diphenol, or related compound, acts as a hydrogen or electron donor and reduces an acceptor other than a cytochrome, NAD, NADP or oxygen. This term was made obsolete because it was an unnecessary grouping term. |
| oxidoreductase activity, acting on peroxide as acceptor | (GO:0016684) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which the peroxide group acts as a hydrogen or electron acceptor. |
| oxidoreductase activity, acting on hydrogen as donor | (GO:0016695) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen acts as an electron donor. |
| oxidoreductase activity, acting on hydrogen as donor, NAD or NADP as acceptor | (GO:0016696) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen acts as an electron donor and reduces NAD or NADP. |
| oxidoreductase activity, acting on hydrogen as donor, cytochrome as acceptor | (GO:0016697) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen acts as an electron donor and reduces a cytochrome. |
| oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor | (GO:0016699) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen acts as an electron donor and reduces an iron-sulfur protein. |
| obsolete oxidoreductase activity, acting on hydrogen as donor, other acceptors | (GO:0016700) | molecular_function | OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which hydrogen is the electron donor and reduces an acceptor other than a cytochrome, an iron-sulfur protein, NAD, NADP or a quinone or similar compound. This term was made obsolete because it was an unnecessary grouping term. |
| oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | (GO:0016701) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and molecular oxygen is incorporated into a donor. |
| oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | (GO:0016702) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor. |
| oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) | (GO:0016703) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and one oxygen atom is incorporated into a donor. |
| obsolete oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, miscellaneous | (GO:0016704) | molecular_function | OBSOLETE. A grouping term for oxidoreductases acting on single donors with incorporation of molecular oxygen that cannot be more accurated categorized. This term was made obsolete because it was an unnecessary grouping term. |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | (GO:0016705) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | (GO:0016706) | molecular_function | Catalysis of the reaction: A + 2-oxoglutarate + O2 = B + succinate + CO2. This is an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and one atom of oxygen is incorporated into each donor. |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor | (GO:0016708) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and two atoms of oxygen are incorporated into one donor. |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | (GO:0016709) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen | (GO:0016712) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced flavin or flavoprotein and one other donor, and one atom of oxygen is incorporated into one donor. |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen | (GO:0016713) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced iron-sulfur protein and one other donor, and one atom of oxygen is incorporated into one donor. |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen | (GO:0016714) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced pteridine and one other donor, and one atom of oxygen is incorporated into one donor. |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen | (GO:0016715) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced ascorbate and one other donor, and one atom of oxygen is incorporated into one donor. |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen | (GO:0016716) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and one atom of oxygen is incorporated into one donor. |
| oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | (GO:0016717) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced to two molecules of water. |
| obsolete oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, miscellaneous | (GO:0016718) | molecular_function | OBSOLETE. A grouping term for oxidoreductases, acting on paired donors with incorporation or reduction of molecular oxygen, that cannot be more accurately categorized. This term was made obsolete because it was an unnecessary grouping term. |
| oxidoreductase activity, acting on superoxide radicals as acceptor | (GO:0016721) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a superoxide radical (O2- or O2.-) acts as a hydrogen or electron acceptor. |
| oxidoreductase activity, acting on CH or CH2 groups | (GO:0016725) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH2 group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. |
| oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor | (GO:0016726) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH2 group acts as a hydrogen or electron donor and reduces NAD+ or NADP. |
| oxidoreductase activity, acting on CH or CH2 groups, oxygen as acceptor | (GO:0016727) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH2 group acts as a hydrogen or electron donor and reduces an oxygen molecule. |
| oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor | (GO:0016728) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH2 group acts as a hydrogen or electron donor and reduces a disulfide group. |
| obsolete oxidoreductase activity, acting on CH2 groups, other acceptors | (GO:0016729) | molecular_function | OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a CH2 group acts as a hydrogen or electron donor and reduces an acceptor other than disulfide, NAD, NADP or oxygen. This term was made obsolete because it was an unnecessary grouping term. |
| oxidoreductase activity, acting on iron-sulfur proteins as donors | (GO:0016730) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which an iron-sulfur protein acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. |
| oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor | (GO:0016731) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which an iron-sulfur protein acts as a hydrogen or electron donor and reduces NAD or NADP. |
| oxidoreductase activity, acting on iron-sulfur proteins as donors, dinitrogen as acceptor | (GO:0016732) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which an iron-sulfur protein acts as a hydrogen or electron donor and reduces dinitrogen. |
| oxidoreductase activity, acting on reduced flavodoxin as donor | (GO:0016737) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which reduced flavodoxin acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. |
| oxidoreductase activity, acting on reduced flavodoxin as donor, dinitrogen as acceptor | (GO:0016738) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which reduced flavodoxin acts as a hydrogen or electron donor and reduces dinitrogen. |
| obsolete oxidoreductase activity, acting on other substrates | (GO:0016739) | molecular_function | OBSOLETE. A grouping term for oxidoreductase that cannot be more accurately categorized. This term was made obsolete because it was an unnecessary grouping term. |
| hydrolase activity, acting on ester bonds | (GO:0016788) | molecular_function | Catalysis of the hydrolysis of any ester bond. |
| hydrolase activity, acting on glycosyl bonds | (GO:0016798) | molecular_function | Catalysis of the hydrolysis of any glycosyl bond. |
| hydrolase activity, acting on ether bonds | (GO:0016801) | molecular_function | Catalysis of the hydrolysis of any ether or thioether bond, -O- or -S- respectively. |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | (GO:0016810) | molecular_function | Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds. |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | (GO:0016811) | molecular_function | Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amide. |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides | (GO:0016812) | molecular_function | Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a cyclic amide. |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines | (GO:0016813) | molecular_function | Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amidine, a compound of the form R-C(=NH)-NH2. |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | (GO:0016814) | molecular_function | Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a cyclic amidine, a compound of the form R-C(=NH)-NH2. |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles | (GO:0016815) | molecular_function | Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a nitrile, a compound containing the cyano radical, -CN. |
| obsolete hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in other compounds | (GO:0016816) | molecular_function | OBSOLETE. Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in substances other than amides, amidines and nitriles. This term was made obsolete because it was an unnecessary grouping term. |
| hydrolase activity, acting on acid anhydrides | (GO:0016817) | molecular_function | Catalysis of the hydrolysis of any acid anhydride. |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | (GO:0016818) | molecular_function | Catalysis of the hydrolysis of any acid anhydride which contains phosphorus. |
| hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides | (GO:0016819) | molecular_function | Catalysis of the hydrolysis of any acid anhydride which contains a sulfonyl group, -SO2-. |
| obsolete hydrolase activity, acting on acid anhydrides, involved in cellular and subcellular movement | (GO:0016821) | molecular_function | OBSOLETE (was not defined before being made obsolete). This term was made obsolete because it incorporates process information. |
| hydrolase activity, acting on acid carbon-carbon bonds | (GO:0016822) | molecular_function | Catalysis of the hydrolysis of any acid carbon-carbon bond. |
| hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances | (GO:0016823) | molecular_function | Catalysis of the hydrolysis of any acid carbon-carbon bond in a ketonic substance, a substance containing a keto (C=O) group. |
| hydrolase activity, acting on acid halide bonds | (GO:0016824) | molecular_function | Catalysis of the hydrolysis of any acid halide bond. |
| hydrolase activity, acting on acid phosphorus-nitrogen bonds | (GO:0016825) | molecular_function | Catalysis of the hydrolysis of any acid phosphorus-nitrogen bond. |
| hydrolase activity, acting on acid sulfur-nitrogen bonds | (GO:0016826) | molecular_function | Catalysis of the hydrolysis of any acid sulfur-nitrogen bond. |
| hydrolase activity, acting on acid carbon-phosphorus bonds | (GO:0016827) | molecular_function | Catalysis of the hydrolysis of any acid carbon-phosphorus bond. |
| hydrolase activity, acting on acid sulfur-sulfur bonds | (GO:0016828) | molecular_function | Catalysis of the hydrolysis of any acid sulfur-sulfur bond. |
| carbon-oxygen lyase activity, acting on polysaccharides | (GO:0016837) | molecular_function | Catalysis of the cleavage of a carbon-oxygen bond by the elimination of an alcohol from a polysaccharide. |
| carbon-oxygen lyase activity, acting on phosphates | (GO:0016838) | molecular_function | Catalysis of the cleavage of a carbon-oxygen bond by elimination of a phosphate. |
| racemase and epimerase activity, acting on amino acids and derivatives | (GO:0016855) | molecular_function | Catalysis of a reaction that alters the configuration of one or more chiral centers in an amino acid. |
| racemase and epimerase activity, acting on hydroxy acids and derivatives | (GO:0016856) | molecular_function | Catalysis of a reaction that alters the configuration of one or more chiral centers in a hydroxy acid molecule. |
| racemase and epimerase activity, acting on carbohydrates and derivatives | (GO:0016857) | molecular_function | Catalysis of a reaction that alters the configuration of one or more chiral centers in a carbohydrate molecule. |
| obsolete racemase and epimerase activity, acting on other compounds | (GO:0016858) | molecular_function | OBSOLETE. Racemase and epimerase activity on compounds other than amino acids, hydroxy acids, carbohydrates or their derivatives. This term was made obsolete because it was an unnecessary grouping term. |
| oxidoreductase activity, acting on the CH-OH group of donors, cytochrome as acceptor | (GO:0016898) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces a cytochrome molecule. |
| oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor | (GO:0016899) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces an oxygen molecule. |
| oxidoreductase activity, acting on the CH-OH group of donors, disulfide as acceptor | (GO:0016900) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces a disulfide molecule. |
| oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor | (GO:0016901) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces a quinone or a similar acceptor molecule. |
| obsolete oxidoreductase activity, acting on the CH-OH group of donors, other acceptors | (GO:0016902) | molecular_function | OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces an acceptor other than a cytochrome, disulfide, NAD, NADP, oxygen or a quinone or similar compound. This term was made obsolete because it was an unnecessary grouping term. |
| obsolete membrane-associated protein with guanylate kinase activity interacting | (GO:0017135) | molecular_function | OBSOLETE. The interaction with synapse-associated membrane-associated protein with guanylate kinase activity. This term was made obsolete because it does not represent a molecular function and the term name appears to make no sense. |
| hydrolase activity, acting on acid halide bonds, in C-halide compounds | (GO:0019120) | molecular_function | Catalysis of the hydrolysis of any acid halide bond in substances containing halogen atoms in organic linkage. |
| nucleotide phosphatase activity, acting on free nucleotides | (GO:0098519) | molecular_function | Catalysis of the reaction: nucleotide + H2O = nucleotide + phosphate. |
| aerobactin biosynthetic process | (GO:0019270) | biological_process | The chemical reactions and pathways resulting in the formation of aerobactin (C22H36N4O13), a hydroxamate iron transport compound. It is a conjugate of 6-(N-acetyl-N-hydroxylamine)-2-aminohexanoic acid and citric acid. |
| aerobactin transport | (GO:0019271) | biological_process | The directed movement of the hydroxamate iron transport compound aerobactin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Aerobactin (C22H36N4O13) is a conjugate of 6-(N-acetyl-N-hydroxylamine)-2-aminohexanoic acid and citric acid. |
| rhizobactin 1021 biosynthetic process | (GO:0019289) | biological_process | The chemical reactions and pathways resulting in the formation of rhizobactin 1021, (E)-4-((3-(acetylhydroxyamino)propyl)-amino)-2-hydroxy-(2-(2-(3-(hydroxy(1-oxo-2-decenyl)amino)propyl)amino)-2-oxoethyl)-4-oxobutanoic acid, a siderophore produced by Sinorhizobium meliloti. |
| ferric-vibriobactin transmembrane transporter activity | (GO:0019535) | molecular_function | Enables the transfer of ferric-vibriobactin ions from one side of a membrane to the other. |
| vibriobactin metabolic process | (GO:0019536) | biological_process | The chemical reactions and pathways involving vibriobactin, the major siderophore produced by Vibrio cholerae. |
| vibriobactin biosynthetic process | (GO:0019537) | biological_process | The chemical reactions and pathways resulting in the formation of vibriobactin, the major siderophore produced by Vibrio cholerae. |
| actin filament-based process | (GO:0030029) | biological_process | Any cellular process that depends upon or alters the actin cytoskeleton, that part of the cytoskeleton comprising actin filaments and their associated proteins. |
| microvillar actin bundle assembly | (GO:0030034) | biological_process | Assembly of the parallel bundle of actin filaments at the core of a microvillus. |
| actin filament reorganization involved in cell cycle | (GO:0030037) | biological_process | The cell cycle process in which rearrangement of the spatial distribution of actin filaments and associated proteins occurs. |
| contractile actin filament bundle assembly | (GO:0030038) | biological_process | Assembly of actin filament bundles in which the filaments are loosely packed (approximately 30-60 nm apart) and arranged with opposing polarities; the loose packing allows myosin (usually myosin-II) to enter the bundle. |
| actin filament fragmentation | (GO:0030043) | biological_process | The severing of actin filaments into numerous short fragments, usually mediated by actin severing proteins. |
| parallel actin filament bundle assembly | (GO:0030046) | biological_process | Assembly of actin filament bundles in which the filaments are tightly packed (approximately 10-20 nm apart) and oriented with the same polarity. |
| actin modification | (GO:0030047) | biological_process | Covalent modification of an actin molecule. |
| vesicle transport along actin filament | (GO:0030050) | biological_process | Movement of a vesicle along an actin filament, mediated by motor proteins. |
| actin cap | (GO:0030478) | cellular_component | Polarized accumulation of cytoskeletal proteins (including F-actin) and regulatory proteins in a cell. An example of this is the actin cap found in Saccharomyces cerevisiae. |
| actin cortical patch | (GO:0030479) | cellular_component | An endocytic patch that consists of an actin-containing structure found at the plasma membrane in cells; formed of networks of branched actin filaments that lie just beneath the plasma membrane and assemble, move, and disassemble rapidly. An example of this is the actin cortical patch found in Saccharomyces cerevisiae. |
| oxidoreductase activity, acting on phosphorus or arsenic in donors | (GO:0030613) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a phosphorus- or arsenic-containing group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. |
| oxidoreductase activity, acting on phosphorus or arsenic in donors, disulfide as acceptor | (GO:0030614) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a phosphorus- or arsenic-containing group acts as a hydrogen or electron donor and reduces a disulfide. |
| regulation of actin filament polymerization | (GO:0030833) | biological_process | Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament. |
| regulation of actin filament depolymerization | (GO:0030834) | biological_process | Any process that modulates the frequency, rate or extent of the disassembly of actin filaments by the removal of actin monomers from a filament. |
| negative regulation of actin filament depolymerization | (GO:0030835) | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of actin depolymerization. |
| positive regulation of actin filament depolymerization | (GO:0030836) | biological_process | Any process that activates or increases the frequency, rate or extent of actin depolymerization. |
| negative regulation of actin filament polymerization | (GO:0030837) | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of actin polymerization. |
| positive regulation of actin filament polymerization | (GO:0030838) | biological_process | Any process that activates or increases the frequency, rate or extent of actin polymerization. |
| cortical actin cytoskeleton | (GO:0030864) | cellular_component | The portion of the actin cytoskeleton, comprising filamentous actin and associated proteins, that lies just beneath the plasma membrane. |
| cortical actin cytoskeleton organization | (GO:0030866) | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane. |
| actin-dependent ATPase activity | (GO:0030898) | molecular_function | Catalysis of the reaction: ATP + H2O = ADP + phosphate. This reaction requires the presence of an actin filament to accelerate release of ADP and phosphate. |
| establishment or maintenance of actin cytoskeleton polarity | (GO:0030950) | biological_process | Any cellular process that results in the specification, formation or maintenance of polarized actin-based cytoskeletal structures. |
| actin rod | (GO:0031002) | cellular_component | A cellular structure consisting of parallel, hexagonally arranged actin tubules, comprising filamentous actin and associated proteins. Actin rod structures are found in diverse organisms, having been observed in spores of Dictyostelium discoideum, Drosophila melanogaster oocytes, as well as in numerous animal cells under stress conditions. |
| actin tubule | (GO:0031003) | cellular_component | A cellular structure, approximately 13 nm in diameter, consisting of three actin filaments bundled together. |
| actin rod assembly | (GO:0031247) | biological_process | The assembly of actin rods, a cellular structure consisting of parallel, hexagonally arranged actin tubules. |
| actin phosphorylation | (GO:0031289) | biological_process | The transfer of one or more phosphate groups to an actin molecule. |
| actin cytoskeleton reorganization | (GO:0031532) | biological_process | A process that is carried out at the cellular level which results in dynamic structural changes to the arrangement of constituent parts of cytoskeletal structures comprising actin filaments and their associated proteins. |
| prolactin-releasing peptide receptor binding | (GO:0031861) | molecular_function | Interacting selectively and non-covalently with a prolactin-releasing peptide receptor. |
| filamentous actin | (GO:0031941) | cellular_component | A two-stranded helical polymer of the protein actin. |
| regulation of actin filament bundle assembly | (GO:0032231) | biological_process | Any process that modulates the frequency, rate or extent of the assembly of actin filament bundles. |
| negative regulation of actin filament bundle assembly | (GO:0032232) | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the assembly of actin filament bundles. |
| positive regulation of actin filament bundle assembly | (GO:0032233) | biological_process | Any process that activates or increases the frequency, rate or extent of the assembly of actin filament bundles. |
| actin filament bundle | (GO:0032432) | cellular_component | An assembly of actin filaments that are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness. |
| regulation of actin cytoskeleton organization | (GO:0032956) | biological_process | Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins. |
| regulation of actin filament-based process | (GO:0032970) | biological_process | Any process that modulates the frequency, rate or extent of any cellular process that depends upon or alters the actin cytoskeleton. |
| actin-myosin filament sliding | (GO:0033275) | biological_process | The sliding movement of actin thin filaments and myosin thick filaments past each other. |
| obsolete actin homodimerization activity | (GO:0033392) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with an identical actin monomer to form a homodimer. This term was made obsolete because it was added in error; formation of an actin dimer is simply a transient step in the polymerization of actin. Also, this term may not represent a real molecular function in GO, but rather that a gene product (actin itself) is part of an actin homodimer transient protein complex. |
| ajugose biosynthetic process using galactinol:raffinose galactosyltransferase | (GO:0033537) | biological_process | The chemical reactions and pathways resulting in the formation of ajugose, the hexasaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside, by a pathway in which galactinol:raffinose galactosyltransferase catalyzes chain elongation by transferring the alpha-galactosyl residue of galactinol to the oligosaccharide. |
| oxidoreductase activity, acting on the CH-NH group of donors, iron-sulfur protein as acceptor | (GO:0033694) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH group acts as a hydrogen or electron donor and reduces an iron-sulfur protein. |
| oxidoreductase activity, acting on CH or CH2 groups, quinone or similar compound as acceptor | (GO:0033695) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH2 group acts as a hydrogen or electron donor and reduces a quinone or similar acceptor molecule. |
| steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | (GO:0033764) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP, and in which one substrate is a sterol derivative. |
| steroid dehydrogenase activity, acting on the CH-CH group of donors | (GO:0033765) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor, and in which one substrate is a sterol derivative. |
| actinomycete-type spore formation | (GO:0034304) | biological_process | The process in which differentiated, resting cells are formed from a substrate mycelium; characteristic of many members of the order Actinomycetales. |
| Arp2/3 complex-mediated actin nucleation | (GO:0034314) | biological_process | The actin nucleation process in which actin monomers combine to form a new branch on the side of an existing actin filament; mediated by the Arp2/3 protein complex and its interaction with other proteins. |
| regulation of Arp2/3 complex-mediated actin nucleation | (GO:0034315) | biological_process | Any process that modulates the frequency, rate or extent of actin nucleation mediated by the Arp2/3 complex and interacting proteins. |
| negative regulation of Arp2/3 complex-mediated actin nucleation | (GO:0034316) | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of actin nucleation mediated by the Arp2/3 complex and interacting proteins. |
| dynactin binding | (GO:0034452) | molecular_function | Interacting selectively and non-covalently with any part of a dynactin complex; dynactin is a large protein complex that activates dynein-based motor activity. |
| mitochondrion migration along actin filament | (GO:0034642) | biological_process | The directed movement of a mitochondrion along a microfilament, mediated by motor proteins. |
| racemase activity, acting on amino acids and derivatives | (GO:0036361) | molecular_function | Catalysis of the interconversion of the two enantiomers of a chiral amino acid or amino acid derivative. |
| prolactin signaling pathway | (GO:0038161) | biological_process | A series of molecular signals initiated by the binding of the peptide hormone prolactin to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. |
| actin-dependent intracellular transport of virus towards nucleus | (GO:0039680) | biological_process | The directed movement of a virus, or part of a virus, towards the host cell nucleus using actin filaments. |
| obsolete cell surface antigen activity, host-interacting | (GO:0042280) | molecular_function | OBSOLETE. Functions as an immunogenic target for the host immune system that masks other invariant surface molecules from immune recognition. This term was made obsolete because describing something as an 'antigen' means that an organism can produce antibodies to it, which says nothing about the gene product activity. |
| actomyosin, actin portion | (GO:0042643) | cellular_component | The actin part of any complex of actin, myosin, and accessory proteins. |
| actinin binding | (GO:0042805) | molecular_function | Interacting selectively and non-covalently with actinin, any member of a family of proteins that crosslink F-actin. |
| chrysobactin metabolic process | (GO:0042857) | biological_process | The chemical reactions and pathways involving the siderophore chrysobactin (alpha-N-(2,3-dihydroxybenzoyl)-D-lysyl-L-serine). |
| chrysobactin biosynthetic process | (GO:0042858) | biological_process | The chemical reactions and pathways resulting in the formation of the siderophore chrysobactin (alpha-N-(2,3-dihydroxybenzoyl)-D-lysyl-L-serine). |
| chrysobactin catabolic process | (GO:0042859) | biological_process | The chemical reactions and pathways resulting in the breakdown of the siderophore chrysobactin (alpha-N-(2,3-dihydroxybenzoyl)-D-lysyl-L-serine). |
| achromobactin metabolic process | (GO:0042860) | biological_process | The chemical reactions and pathways involving achromobactin, a citrate siderophore. |
| achromobactin biosynthetic process | (GO:0042861) | biological_process | The chemical reactions and pathways resulting in the formation of achromobactin, a citrate siderophore. |
| achromobactin catabolic process | (GO:0042862) | biological_process | The chemical reactions and pathways resulting in the breakdown of achromobactin, a citrate siderophore. |
| enterobactin transport | (GO:0042930) | biological_process | The directed movement of the siderochrome enterobactin, a cyclic trimer of 2, 3 dihydroxybenzoylserine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
| enterobactin transmembrane transporter activity | (GO:0042931) | molecular_function | Enables the directed movement of the siderochrome enterochelin, a cyclic trimer of 2, 3 dihydroxybenzoylserine from one side of a membrane to the other. |
| chrysobactin transport | (GO:0042932) | biological_process | The directed movement of the siderophore chrysobactin (alpha-N-(2,3-dihydroxybenzoyl)-D-lysyl-L-serine) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
| chrysobactin transmembrane transporter activity | (GO:0042933) | molecular_function | Enables the directed movement of the siderophore chrysobactin (alpha-N-(2,3-dihydroxybenzoyl)-D-lysyl-L-serine) from one side of a membrane to the other. |
| achromobactin transmembrane transporter activity | (GO:0042934) | molecular_function | Enables the transfer of achromobactin, a citrate siderophore, from one side of a membrane to the other. |
| achromobactin transport | (GO:0042935) | biological_process | The directed movement of achromobactin, a citrate siderophore, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
| regulation of actin phosphorylation | (GO:0043538) | biological_process | Any process that modulates the frequency, rate or extent of the transfer of one or more phosphate groups to an actin molecule. |
| protein localization to actin cortical patch | (GO:0044379) | biological_process | A process in which a protein is transported to, or maintained in, an actin cortical patch. |
| actin cortical patch organization | (GO:0044396) | biological_process | A process that is carried out at the cellular level and results in the assembly, arrangement of constituent parts, or disassembly of an actin cortical patch, a discrete actin-containing structure found at the plasma membrane in cells, at sites of endocytosis. |
| actin cortical patch internalization | (GO:0044397) | biological_process | A process of actin cortical patch localization in which the patch moves from the cell surface to the inside of the cell. |
| actin nucleation | (GO:0045010) | biological_process | The initial step in the formation of an actin filament, in which actin monomers combine to form a new filament. Nucleation is slow relative to the subsequent addition of more monomers to extend the filament. |
| obsolete negative regulation of actin polymerization and/or depolymerization | (GO:0045757) | biological_process | OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of actin polymerization and/or depolymerization. This term was made obsolete because it has been split. |
| obsolete positive regulation of actin polymerization and/or depolymerization | (GO:0045758) | biological_process | OBSOLETE. Any process that activates or increases the frequency, rate or extent of actin polymerization and/or depolymerization. This term was made obsolete because it has been split. |
| enterobactin catabolic process | (GO:0046214) | biological_process | The chemical reactions and pathways resulting in the breakdown of enterobactin, a catechol-derived siderochrome of Enterobacteria; enterobactin (N',N',N''-(2,6,10-trioxo-1,5,9-triacyclodecane-3,7,11-triyl)tris(2,3-dihydroxy)benzamide) is a self-triester of 2,3-dihydroxy-N-benzoyl-L-serine and a product of the shikimate pathway. |
| aerobactin metabolic process | (GO:0046442) | biological_process | The chemical reactions and pathways involving aerobactin (C22H36N4O13), a hydroxamate iron transport compound. It is a conjugate of 6-(N-acetyl-N-hydroxylamine)-2-aminohexanoic acid and citric acid. |
| rhizobactin 1021 metabolic process | (GO:0046494) | biological_process | The chemical reactions and pathways involving rhizobactin 1021, (E)-4-((3-(acetylhydroxyamino)propyl)-amino)-2-hydroxy-(2-(2-(3-(hydroxy(1-oxo-2-decenyl)amino)propyl)amino)-2-oxoethyl)-4-oxobutanoic acid, a siderophore produced by Sinorhizobium meliloti. |
| hydrolase activity, acting on carbon-sulfur bonds | (GO:0046508) | molecular_function | Catalysis of the hydrolysis of any carbon-sulfur bond, C-S. |
| oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor | (GO:0046857) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces NAD or NADP. |
| oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond | (GO:0046992) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which X-H and Y-H form X-Y. |
| oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with oxygen as acceptor | (GO:0046993) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which X-H and Y-H form X-Y and the acceptor is oxygen. |
| oxidoreductase activity, acting on hydrogen as donor, with a quinone or similar compound as acceptor | (GO:0046994) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen acts as an electron donor and reduces quinone or similar compound. |
| oxidoreductase activity, acting on hydrogen as donor, with other known acceptors | (GO:0046995) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen reduces a known acceptor other than a cytochrome, an iron-sulfur protein, NAD, NADP, or a quinone or similar compound. |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, with NAD(P)H as one donor, and the other dehydrogenated | (GO:0046996) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and the latter donor is dehydrogenated. |
| oxidoreductase activity, acting on the CH-NH group of donors, flavin as acceptor | (GO:0046997) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH group acts as a hydrogen or electron donor and reduces a flavin. |
| galactinol-raffinose galactosyltransferase activity | (GO:0047268) | molecular_function | Catalysis of the reaction: raffinose + 1-alpha-D-galactosyl-myo-inositol = stachyose + myo-inositol. |
| galactinol-sucrose galactosyltransferase activity | (GO:0047274) | molecular_function | Catalysis of the reaction: sucrose + 1-alpha-D-galactosyl-myo-inositol = raffinose + myo-inositol. |
| actinomycin lactonase activity | (GO:0047615) | molecular_function | Catalysis of the reaction: actinomycin + H2O = actinomycinic monolactone. |
| obsolete actin cortical patch distribution | (GO:0048228) | biological_process | OBSOLETE. Any process that establishes the spatial arrangement of actin cortical patches. An actin cortical patch is a discrete actin-containing structure found at the plasma membrane in fungal cells. This term was made obsolete because its definition is very similar to that of its parent term, actin cortical patch localization (GO:0051666), but somewhat unclear, and not similar enough to merge the terms. |
| obsolete oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with other acceptors | (GO:0050466) | molecular_function | OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which X-H and Y-H form X-Y and the acceptor is not disulfide or oxygen. This term was made obsolete because it was an unnecessary grouping term. |
| oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor | (GO:0050485) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which X-H and Y-H form X-Y and the acceptor is disulfide. |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, with 2-oxoglutarate as one donor, and the other dehydrogenated | (GO:0050498) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and the latter donor is dehydrogenated. |
| oxidoreductase activity, acting on phosphorus or arsenic in donors, with NAD(P)+ as acceptor | (GO:0050499) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a phosphorus- or arsenic-containing group acts as a hydrogen or electron donor and reduces a NAD(P)+ to NAD(P)H. |
| oxidoreductase activity, acting on phosphorus or arsenic in donors, with other known acceptors | (GO:0050522) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which phosphorus or arsenic acts as a hydrogen or electron donor and reduces a known acceptor other than disulfide, NAD or NADP. |
| obsolete oxidoreductase activity, acting on phosphorus or arsenic in donors, with other acceptors | (GO:0050523) | molecular_function | OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which phosphorus or arsenic acts as a hydrogen or electron donor and reduces an acceptor other than disulfide, NAD or NADP. This term was made obsolete because it was an unnecessary grouping term. |
| aerobactin synthase activity | (GO:0050565) | molecular_function | Catalysis of the reaction: 2 N(6)-acetyl-N(6)-hydroxy-L-lysine + 4 ATP + citrate + 2 H(2)O = 4 ADP + aerobactin + 8 H(+) + 4 phosphate. |
| oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor | (GO:0050664) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces an oxygen molecule. |
| obsolete hydrolase activity, acting on acid anhydrides, acting on GTP, involved in cellular and subcellular movement | (GO:0050800) | molecular_function | OBSOLETE. Catalysis of the hydrolysis of GTP to directly drive the cellular or subcellular transport of a substance. This term was made obsolete because it represents both process and function information. |
| regulation of actin nucleation | (GO:0051125) | biological_process | Any process that modulates the frequency, rate or extent of actin nucleation, the initial step in the formation of an actin filament in which actin monomers combine to form a new filament. |
| negative regulation of actin nucleation | (GO:0051126) | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of actin nucleation, the initial step in the formation of an actin filament in which actin monomers combine to form a new filament. |
| positive regulation of actin nucleation | (GO:0051127) | biological_process | Any process that activates or increases the frequency, rate or extent of actin nucleation, the initial step in the formation of an actin filament in which actin monomers combine to form a new filament. |
| muscle alpha-actinin binding | (GO:0051371) | molecular_function | Interacting selectively and non-covalently with muscle isoforms of actinin. Muscle alpha-actinin isoforms are found in skeletal and cardiac muscle and are localized to the Z-disc. |
| alpha-actinin binding | (GO:0051393) | molecular_function | Interacting selectively and non-covalently with alpha-actinin, one of a family of proteins that cross-link F-actin as antiparallel homodimers. Alpha-actinin has a molecular mass of 93-103 KDa; at the N-terminus there are two calponin homology domains, at the C-terminus there are two EF-hands. These two domains are connected by the rod domain. This domain is formed by triple-helical spectrin repeats. |
| barbed-end actin filament uncapping | (GO:0051638) | biological_process | The removal of capping protein from the barbed (or plus) end of actin filaments to free the ends for addition, exchange or removal of further actin subunits. |
| actin filament network formation | (GO:0051639) | biological_process | The assembly of a network of actin filaments; actin filaments on different axes and with differing orientations are crosslinked together to form a mesh of filaments. |
| actin cortical patch localization | (GO:0051666) | biological_process | Any process in which actin cortical patches are transported to, or maintained in, a specific location. An actin cortical patch is a discrete actin-containing structure found just beneath the plasma membrane in fungal cells. |
| actin filament capping | (GO:0051693) | biological_process | The binding of a protein or protein complex to the end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits. |
| pointed-end actin filament capping | (GO:0051694) | biological_process | The binding of a protein or protein complex to the pointed (or minus) end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits. |
| actin filament uncapping | (GO:0051695) | biological_process | The removal of capping protein from the end of actin filaments to free the ends for addition, exchange or removal of further actin subunits. |
| pointed-end actin filament uncapping | (GO:0051696) | biological_process | The removal of capping protein from the pointed (or minus) end of actin filaments to free the ends for addition, exchange or removal of further actin subunits. |
| DNA (cytosine-5-)-methyltransferase activity, acting on CpG substrates | (GO:0051718) | molecular_function | Catalysis of the reaction: S-adenosyl-L-methionine + CpG (in DNA) = S-adenosyl-L-homocysteine + 5-MeCpG (in DNA). |
| DNA (cytosine-5-)-methyltransferase activity, acting on CpN substrates | (GO:0051719) | molecular_function | Catalysis of the reaction: S-adenosyl-L-methionine + DNA containing CpN = S-adenosyl-L-homocysteine + DNA containing 5-MeCpN. |
| DNA (cytosine-5-)-methyltransferase activity, acting on CpNpG substrates | (GO:0051720) | molecular_function | Catalysis of the reaction: S-adenosyl-L-methionine + DNA containing CpNpG = S-adenosyl-L-homocysteine + DNA containing 5-MeCpNpG. |
| actin crosslink formation | (GO:0051764) | biological_process | The process in which two or more actin filaments are connected together by proteins that act as crosslinks between the filaments. The crosslinked filaments may be on the same or differing axes. |
| oxidoreductase activity, acting on halogen in donors | (GO:0052583) | molecular_function | Catalysis of an oxidation-reduction in which a halogen in the donor substance acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. |
| oxidoreductase activity, acting on halogen in donors, with NAD or NADP as acceptor | (GO:0052584) | molecular_function | Catalysis of an oxidation-reduction in which a halogen in the donor substance acts as a hydrogen or electron donor and reduces NAD or NADP. |
| oxidoreductase activity, acting on the CH-NH2 group of donors, with a quinone or similar compound as acceptor | (GO:0052585) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces a quinone or similar compound. |
| oxidoreductase activity, acting on other nitrogenous compounds as donors, with a quinone or similar compound as acceptor | (GO:0052586) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces a quinone or similar compound. |
| oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor | (GO:0052592) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH2 group acts as a hydrogen or electron donor and reduces an iron-sulfur protein. |
| oxidoreductase activity, acting on the aldehyde or oxo group of donors, with a quinone or similar compound as acceptor | (GO:0052738) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a quinone or similar compound. |
| oxidoreductase activity, acting on the CH-NH2 group of donors, with a copper protein as acceptor | (GO:0052877) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and a copper protein is the acceptor. |
| oxidoreductase activity, acting on diphenols and related substances as donors, with copper protein as acceptor | (GO:0052880) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a diphenol, or related compound, acts as a hydrogen or electron donor and reduces a copper protein. |
| oxidoreductase activity, acting on phosphorus or arsenic in donors, with a copper protein as acceptor | (GO:0052882) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a phosphorus- or arsenic-containing group acts as a hydrogen or electron donor and reduces a copper protein. |
| oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor | (GO:0052890) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a flavin. |
| prolactin secreting cell differentiation | (GO:0060127) | biological_process | The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of a prolactin secreting cell. A prolactin secreting cell is an acidophilic cell of the anterior pituitary that produces prolactin. |
| prolactin secreting cell development | (GO:0060132) | biological_process | The process whose specific outcome is the progression of a prolactin secreting cell over time, from its formation to the mature structure. A prolactin secreting cell is an acidophilic cell of the anterior pituitary that produces prolactin. |
| cytoplasmic actin-based contraction involved in cell motility | (GO:0060327) | biological_process | The actin filament-based movement by which cytoplasmic actin filaments slide past one another resulting in a contraction that propels the cell from one place to another. |
| cytoplasmic actin-based contraction involved in forward cell motility | (GO:0060328) | biological_process | The actin filament-based movement by which cytoplasmic actin filaments slide past one another resulting in a contraction that propels the cell in the direction that has been defined as the front of the cell. |
| cytoplasmic actin-based contraction involved in rearward cell motility | (GO:0060329) | biological_process | The actin filament-based movement by which cytoplasmic actin filaments slide past one another resulting in a contraction that propels the cell in the direction that has been defined as the rear of the cell. |
| positive regulation of actin filament polymerization involved in acrosome reaction | (GO:0060475) | biological_process | Any process that activates or increases the frequency, rate or extent of actin polymerization as part of the acrosome reaction. |
| regulation of actin cortical patch localization | (GO:0060583) | biological_process | Any process that modulates the localization of an actin cortical patch. An actin cortical patch is a discrete actin-containing structure found just beneath the plasma membrane in fungal cells. |
| actin filament bundle organization | (GO:0061572) | biological_process | A process that results in the assembly, arrangement of constituent parts, or disassembly of an actin filament bundle. |
| actin filament bundle retrograde transport | (GO:0061573) | biological_process | A process of actin filament bundle distribution that results in the arrangement of actin filament bundles from the periphery toward the interior of the cell. |
| ubiquitinyl hydrolase activity, acting on linear ubiquitin | (GO:0061815) | molecular_function | Catalysis of the hydrolysis of ubiquitin units from linear ubiquitin chains. |
| actin filament branch point | (GO:0061834) | cellular_component | The part of an actin filament where the structure forks. |
| actin fusion focus localization | (GO:0061915) | biological_process | Any process in which an actin fusion focus are transported to, or maintained in, a specific location. The actin fusion focus is an aster-like, F-actin-containing structure at the mating projection tip where the cell wall is degraded during conjugation with cellular fusion. |
| positive regulation of actin filament polymerization involved in sperm capacitation | (GO:0061954) | biological_process | Any process that icreases the rate or extent of actin polymerization as part of sperm capacitation. This process prevents a spontaneous acrosome reaction. |
| positive regulation of actin filament depolymerization involved in acrosome reaction | (GO:0061955) | biological_process | Any process that increases the rate or exent of actin depolymerization as part of the acrosome reaction. This allows the acrosomal membrane and plasma membrane to fuse. |
| peptidase activity, acting on D-amino acid peptides | (GO:0070010) | molecular_function | Catalysis of the hydrolysis of peptide bonds formed between D-amino acids. |
| 'de novo' actin filament nucleation | (GO:0070060) | biological_process | The actin nucleation process in which actin monomers combine in the absence of any existing actin filaments; elongation of the actin oligomer formed by nucleation leads to the formation of an unbranched filament. |
| actin-mediated cell contraction | (GO:0070252) | biological_process | The actin filament-based process in which cytoplasmic actin filaments slide past one another resulting in contraction of all or part of the cell body. |
| actin polymerization-dependent cell motility | (GO:0070358) | biological_process | A process involved in the controlled movement of a bacterial cell powered by the continuous polymerization of actin at one pole of the cell. |
| actin polymerization-dependent cell motility involved in migration of symbiont in host | (GO:0070359) | biological_process | A process involved in the controlled movement of a bacterial cell within a host cell, powered by the continuous polymerization of host actin at one pole of the cell. |
| migration of symbiont within host by polymerization of host actin | (GO:0070360) | biological_process | The directional movement of an organism, usually a bacterial cell, from one place to another within its host organism, by a process involving continuous polymerization of host actin at one pole of the symbiont cell. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
| prolactin secretion | (GO:0070459) | biological_process | The regulated release of prolactin, a peptide hormone that stimulates lactation, from secretory granules in the anterior pituitary. |
| formin-nucleated actin cable | (GO:0070648) | cellular_component | An actin filament bundle that consists of short filaments organized into bundles of uniform polarity, and is nucleated by formins. In fungal cells, myosin motors transport cargo along actin cables toward sites of polarized cell growth; actin cables may play a similar role in pollen tube growth. |
| formin-nucleated actin cable assembly | (GO:0070649) | biological_process | The aggregation, arrangement and bonding together of a set of components to form a formin-nucleated actin cable. A formin-nucleated actin cable is an actin filament bundle that consists of short filaments organized into bundles of uniform polarity, and is nucleated by formins. |
| actin filament bundle distribution | (GO:0070650) | biological_process | Any cellular process that establishes the spatial arrangement of actin filament bundles within the cell. |
| actomyosin contractile ring actin filament bundle assembly | (GO:0071519) | biological_process | A process of actin filament bundle formation that occurs in the context of assembling an actomyosin contractile ring during cytokinesis. |
| actomyosin contractile ring assembly actin filament bundle convergence | (GO:0071520) | biological_process | A process of actin filament bundle distribution that occurs in the context of assembling an actomyosin contractile ring during cytokinesis, and that results in the compaction of actin filaments into a tight ring. |
| Actinobacterium-type cell wall biogenesis | (GO:0071766) | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall of the type found in Actinobacteria. The cell wall is the rigid or semi-rigid envelope lying outside the cell membrane. Actinobacterial cell walls contain characteristic mycolic acids, of which some are covalently linked to the cell wall peptidoglycan and others accumulate at the cell surface. |
| actin filament debranching | (GO:0071846) | biological_process | An actin filament severing process that results in the removal of actin filament branches specifically at the branch points. |
| cis-acting DNA replication termination | (GO:0071946) | biological_process | A DNA replication termination process that is initiated by protein binding to a binding site on the same chromosome, but remote from the termination site, via DNA looping or chromosome kissing. |
| response to actinomycin D | (GO:0072716) | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an actinomycin D stimulus. |
| cellular response to actinomycin D | (GO:0072717) | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an actinomycin D stimulus. |
| actin-dependent intracellular transport of virus | (GO:0075520) | biological_process | The directed movement of a virus, or part of a virus, within the host cell cytoplasm via the host's actin filaments. Actin-dependent transport is induced by viral proteins that interact with actin and/or host cell motor proteins like myosins or that promotes actin polymerization/depolymerization reactions. |
| actin filament branching | (GO:0090135) | biological_process | The formation of daughter actin filament branches at an angle on the sides of preexisting mother filaments. |
| regulation of actin cytoskeleton organization by cell-cell adhesion | (GO:0090138) | biological_process | Any cell-cell adhesion process that modulates the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins. |
| regulation of formin-nucleated actin cable assembly | (GO:0090337) | biological_process | Any process that modulates the rate, frequency, or extent of formin-nucleated actin cable assembly. Formin-nucleated actin cable assembly is the aggregation, arrangement and bonding together of a set of components to form a formin-nucleated actin cable. A formin-nucleated actin cable is an actin filament bundle that consists of short filaments organized into bundles of uniform polarity, and is nucleated by formins. |
| positive regulation of formin-nucleated actin cable assembly | (GO:0090338) | biological_process | Any process that increases the rate, frequency, or extent of formin-nucleated actin cable assembly. Formin-nucleated actin cable assembly is the aggregation, arrangement and bonding together of a set of components to form a formin-nucleated actin cable. A formin-nucleated actin cable is an actin filament bundle that consists of short filaments organized into bundles of uniform polarity, and is nucleated by formins. |
| negative regulation of formin-nucleated actin cable assembly | (GO:0090339) | biological_process | Any process that decreases the rate, frequency, or extent of formin-nucleated actin cable assembly. Formin-nucleated actin cable assembly is the aggregation, arrangement and bonding together of a set of components to form a formin-nucleated actin cable. A formin-nucleated actin cable is an actin filament bundle that consists of short filaments organized into bundles of uniform polarity, and is nucleated by formins. |
| actin filament bundle convergence | (GO:0090426) | biological_process | A process of actin filament bundle distribution that results in the compaction of actin filaments. |
| cytochrome-b5 reductase activity, acting on NADPH | (GO:0090523) | molecular_function | Catalysis of the reaction: NADPH + H+ + 2 ferricytochrome b(5) = NADP+ + 2 ferrocytochrome b(5). |
| cytochrome-b5 reductase activity, acting on NADH | (GO:0090524) | molecular_function | Catalysis of the reaction: NADH + H+ + 2 ferricytochrome b(5) = NAD+ + 2 ferrocytochrome b(5). |
| actin filament reorganization | (GO:0090527) | biological_process | A process that is carried out at the cellular level which results in dynamic structural changes to the arrangement of actin filaments. |
| phosphodiesterase activity, acting on 3'-phosphoglycolate-terminated DNA strands | (GO:0090580) | molecular_function | Catalysis of the hydrolytic removal of phosphoglycolate from the 3'-terminus of a 3'-phosphoglycolate-terminated DNA strand. |
| cofilin-actin rod | (GO:0090732) | cellular_component | A cellular structure consisting of parallel, hexagonally arranged actin tubules, comprising filamentous actin and disulfide cross-linked cofilin multimers. |
| microvillar actin bundle | (GO:0097516) | cellular_component | A parallel bundle of actin filaments at the core of a microvillus. |
| contractile actin filament bundle | (GO:0097517) | cellular_component | An actin filament bundle in which the filaments are loosely packed (approximately 30-60 nm apart) and arranged with opposing polarities; the loose packing allows myosin (usually myosin-II) to enter the bundle. |
| parallel actin filament bundle | (GO:0097518) | cellular_component | An actin filament bundle in which the filaments are tightly packed (approximately 10-20 nm apart) and oriented with the same polarity. |
| structural constituent of presynaptic actin cytoskeleton | (GO:0098699) | molecular_function | The action of a molecule that contributes to the structural integrity of a presynaptic actin cytoskeleton. |
| actin-based cell projection | (GO:0098858) | cellular_component | A cell projection supported by an assembly of actin filaments, and which lacks microtubules. |
| actin filament bundle of actin-based cell projection | (GO:0098859) | cellular_component | A bundle of cross-linked actin filaments that is part of an actin-based cell protrusion, in which filaments are oriented such that the plus (barbed) ends are at the tip of the protrusion, capped by a tip complex which stabilizes the filaments. |
| actin filament bundle of stereocilium | (GO:0098860) | cellular_component | A bundle of hundreds of cross-linked actin filaments (an actin cable), that is the supporting structure of a stereocilium. Filaments are oriented such that the the plus (barbed) ends are at the tip of the protrusion and are capped by a tip complex which bridges to the plasma membrane. |
| actin filament bundle of filopodium | (GO:0098861) | cellular_component | A parallel bundle of actin filaments that is part of filopodium. Filaments are oriented such that the plus (barbed) ends are at the tip of the protrusion, capped by a tip complex. |
| cluster of actin-based cell projections | (GO:0098862) | cellular_component | A cell part consisting of multiple, closely packed actin-based cell projections. |
| postsynaptic actin cytoskeleton | (GO:0098871) | cellular_component | The actin cytoskeleton that is part of a postsynapse |
| modification of postsynaptic actin cytoskeleton | (GO:0098885) | biological_process | Any process that modifies the structure of a postsynaptic actin cytoskeleton. |
| actin cytoskeleton of dendritic spine | (GO:0098938) | cellular_component | The actin cytoskeleton that is part of a dendritic spine. |
| structural constituent of postsynaptic actin cytoskeleton | (GO:0098973) | molecular_function | The action of a molecule that contributes to the structural integrity of a postsynaptic actin cytoskeleton. |
| postsynaptic actin cytoskeleton organization | (GO:0098974) | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins in the postsynaptic actin cytoskeleton. |
| actin body | (GO:0099079) | cellular_component | An amorphous cytoskeletal structure consisting of aggregated actin filaments and associated proteins (including fibrin and capping protein) in which there is little or no actin filament turnover. In yeast (S. pombe and S. cerevisiae) these are found only in quiescent cells and are thought to serve as a reserve store of actin. |
| presynaptic actin cytoskeleton organization | (GO:0099140) | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins in the presynaptic actin cytoskeleton. |
| presynaptic actin cytoskeleton | (GO:0099143) | cellular_component | The actin cytoskeleton that is part of a presynapse |
| synaptic vesicle transport along actin filament | (GO:0099506) | biological_process | The directed movement of synaptic vesicles along actin filaments within a cell, powered by molecular motors. |
| actin filament-based transport | (GO:0099515) | biological_process | The transport of organelles or other particles from one location in the cell to another along actin filaments. |
| lipoyl synthase activity (acting on glycine-cleavage complex H protein | (GO:0102552) | molecular_function | Catalysis of the reaction: 2 S-adenosyl-L-methionine + a [glycine-cleavage complex H protein] N6-octanoyl-L-lysine + 2 a sulfurated [sulfur carrier] = 2 L-methionine + 2 5'-deoxyadenosine + a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine + 2 an unsulfurated [sulfur carrier] |
| lipoyl synthase activity (acting on pyruvate dehydrogenase E2 protein) | (GO:0102553) | molecular_function | Catalysis of the reaction: 2 S-adenosyl-L-methionine + a [pyruvate dehydrogenase E2 protein] N6-octanoyl-L-lysine + 2 a sulfurated [sulfur carrier] = 2 L-methionine + 2 5'-deoxyadenosine + 2 H+ + a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine + 2 an unsulfurated [sulfur carrier] |
| lipoyl synthase activity (acting on 2-oxoglutarate-dehydrogenase E2 protein | (GO:0102554) | molecular_function | Catalysis of the reaction: 2 S-adenosyl-L-methionine + a [2-oxoglutarate-dehydrogenase E2 protein] N6-octanoyl-L-lysine + 2 a sulfurated [sulfur carrier] = 2 L-methionine + 2 5'-deoxyadenosine + 2 H+ + a [2-oxoglutarate dehydrogenase E2 protein] N6-lipoyl-L-lysine + 2 an unsulfurated [sulfur carrier] |
| octanoyl transferase activity (acting on glycine-cleavage complex H protein) | (GO:0102555) | molecular_function | Catalysis of the reaction: [glycine cleavage system lipoyl-carrier protein]-L-lysine + OCTANOYL-ACP = H+ + a [glycine-cleavage complex H protein] N6-octanoyl-L-lysine + a holo-[acyl-carrier protein] |
| stachyose galactinol:verbascose galactosyltransferase activity | (GO:0102828) | molecular_function | Catalysis of the reaction: stachyose + alpha-D-galactosyl-(1->3)-1D-myo-inositol <=> verbascose + myo-inositol |
| verbascose galactinol:ajugose galactosyltransferase activity | (GO:0102832) | molecular_function | Catalysis of the reaction: verbascose + alpha-D-galactosyl-(1->3)-1D-myo-inositol <=> ajugose + myo-inositol |
| sequoyitol galactinol:D-galactosylononitol galactosyltransferase activity | (GO:0102833) | molecular_function | Catalysis of the reaction: 1D-5-O-methyl-myo-inositol + alpha-D-galactosyl-(1->3)-1D-myo-inositol <=> D-galactosylononitol + myo-inositol |
| formin-nucleated actin cable organization | (GO:0110009) | biological_process | A process that results in the assembly, arrangement of constituent parts, or disassembly of a formin-nucleated actin cable. |
| regulation of actin filament organization | (GO:0110053) | biological_process | Any process that modulates the frequency, rate or extent of actin filament organization. |
| regulation of actin filament annealing | (GO:0110054) | biological_process | Any process that modulates the frequency, rate or extent of actin filament annealing, i.e. the end-to-end joining of existing actin filaments. |
| negative regulation of actin filament annealing | (GO:0110055) | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of actin filament annealing, i.e. the end-to-end joining of existing actin filaments. |
| positive regulation of actin filament annealing | (GO:0110056) | biological_process | Any process that activates or increases the frequency, rate or extent of actin filament annealing, i.e. the end-to-end joining of existing actin filaments. |
| actomyosin contractile ring, distal actin filament layer | (GO:0120106) | cellular_component | The region of the actomyosin ring containing actin filaments and cross linkers, myosin motors, and connections to the plasma membrane through the intermediate layer. It is further from the plasma membrane than the intermediate layer which it is adjacent to. |
| prolactin metabolic process | (GO:0120122) | biological_process | The chemical reactions and pathways involving prolactin, a protein hormone of the anterior pituitary gland that promotes lactation in response to the suckling stimulus of hungry young mammals. |
| negative regulation of actin cortical patch assembly | (GO:0120133) | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the assembly of actin cortical patches. |
| positive regulation of actin filament bundle convergence involved in mitotic contractile ring assembly | (GO:0120172) | biological_process | Any process that activates or increases the frequency, rate or extent of actin filament bundle convergence involved in mitotic contractile ring assembly. |
| regulation of actin filament bundle convergence involved in mitotic contractile ring assembly | (GO:0120173) | biological_process | Any process that modulates the frequency, rate or extent of actin filament bundle convergence involved in mitotic contractile ring assembly. |
| catalytic activity, acting on a protein | (GO:0140096) | molecular_function | Catalytic activity that acts to modify a protein. |
| catalytic activity, acting on DNA | (GO:0140097) | molecular_function | Catalytic activity that acts to modify DNA. |
| catalytic activity, acting on RNA | (GO:0140098) | molecular_function | Catalytic activity that acts to modify RNA. |
| catalytic activity, acting on a tRNA | (GO:0140101) | molecular_function | Catalytic activity that acts to modify a tRNA. |
| catalytic activity, acting on a rRNA | (GO:0140102) | molecular_function | Catalytic activity that acts to modify a ribosomal RNA. |
| catalytic activity, acting on a glycoprotein | (GO:0140103) | molecular_function | catalytic activity, acting on a glycosylated protein |
| multiple synapse bouton, contacting single dendrite | (GO:0150087) | cellular_component | A single axon terminal bouton making contact onto two or more dendritic spines protruding from the same dendrite. |
| multiple synapse bouton, contacting multiple dendrites | (GO:0150088) | cellular_component | A single axon terminal bouton making contact onto two or more dendritic spines protruding from multiple dendrites. |
| actinorhodin metabolic process | (GO:1901110) | biological_process | The chemical reactions and pathways involving actinorhodin. |
| actinorhodin catabolic process | (GO:1901111) | biological_process | The chemical reactions and pathways resulting in the breakdown of actinorhodin. |
| actinorhodin biosynthetic process | (GO:1901112) | biological_process | The chemical reactions and pathways resulting in the formation of actinorhodin. |
| regulation of prolactin signaling pathway | (GO:1902211) | biological_process | Any process that modulates the frequency, rate or extent of prolactin signaling pathway. |
| negative regulation of prolactin signaling pathway | (GO:1902212) | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of prolactin signaling pathway. |
| positive regulation of prolactin signaling pathway | (GO:1902213) | biological_process | Any process that activates or increases the frequency, rate or extent of prolactin signaling pathway. |
| negative regulation of prolactin secretion | (GO:1902721) | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of prolactin secretion. |
| positive regulation of prolactin secretion | (GO:1902722) | biological_process | Any process that activates or increases the frequency, rate or extent of prolactin secretion. |
| regulation of phosphodiesterase activity, acting on 3'-phosphoglycolate-terminated DNA strands | (GO:1903021) | biological_process | Any process that modulates the frequency, rate or extent of phosphodiesterase activity, acting on 3'-phosphoglycolate-terminated DNA strands. |
| positive regulation of phosphodiesterase activity, acting on 3'-phosphoglycolate-terminated DNA strands | (GO:1903022) | biological_process | Any process that activates or increases the frequency, rate or extent of phosphodiesterase activity, acting on 3'-phosphoglycolate-terminated DNA strands. |
| regulation of actin filament-based movement | (GO:1903115) | biological_process | Any process that modulates the frequency, rate or extent of actin filament-based movement. |
| positive regulation of actin filament-based movement | (GO:1903116) | biological_process | Any process that activates or increases the frequency, rate or extent of actin filament-based movement. |
| regulation of actin filament organization involved in cytokinetic actomyosin contractile ring assembly | (GO:1903117) | biological_process | Any process that modulates the frequency, rate or extent of actin filament organization involved in cytokinetic actomyosin contractile ring assembly. |
| protein localization to actin cytoskeleton | (GO:1903119) | biological_process | A process in which a protein is transported to, or maintained in, the location of an actin cytoskeleton. |
| protein localization to actin filament bundle | (GO:1903120) | biological_process | A process in which a protein is transported to, or maintained in, the location of an actin filament bundle. |
| actomyosin contractile ring actin filament | (GO:1903144) | cellular_component | Any actin filament that is part of a actomyosin contractile ring. |
| actin filament of cell cortex of cell tip | (GO:1903145) | cellular_component | Any actin filament that is part of a cell cortex of cell tip. |
| mitotic contractile ring actin filament bundle assembly | (GO:1903477) | biological_process | Any actin filament bundle assembly that is involved in mitotic actomyosin contractile ring assembly. |
| actin filament bundle convergence involved in mitotic contractile ring assembly | (GO:1903478) | biological_process | Any actin filament bundle convergence that is involved in mitotic actomyosin contractile ring assembly. |
| mitotic actomyosin contractile ring assembly actin filament organization | (GO:1903479) | biological_process | Any actin filament organization that is involved in mitotic actomyosin contractile ring assembly. |
| regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly | (GO:1903480) | biological_process | Any process that modulates the frequency, rate or extent of actin filament organization involved in mitotic actomyosin contractile ring assembly. |
| negative regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly | (GO:1903481) | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of actin filament organization involved in mitotic actomyosin contractile ring assembly. |
| positive regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly | (GO:1903482) | biological_process | Any process that activates or increases the frequency, rate or extent of actin filament organization involved in mitotic actomyosin contractile ring assembly. |
| regulation of actin filament severing | (GO:1903918) | biological_process | Any process that modulates the frequency, rate or extent of actin filament severing. |
| negative regulation of actin filament severing | (GO:1903919) | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of actin filament severing. |
| positive regulation of actin filament severing | (GO:1903920) | biological_process | Any process that activates or increases the frequency, rate or extent of actin filament severing. |
| enterobactin binding | (GO:1903981) | molecular_function | Interacting selectively and non-covalently with enterobactin. |
| regulation of protein localization to actin cortical patch | (GO:1904370) | biological_process | Any process that modulates the frequency, rate or extent of protein localization to actin cortical patch. |
| negative regulation of protein localization to actin cortical patch | (GO:1904371) | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to actin cortical patch. |
| positive regulation of protein localization to actin cortical patch | (GO:1904372) | biological_process | Any process that activates or increases the frequency, rate or extent of protein localization to actin cortical patch. |
| regulation of actin filament binding | (GO:1904529) | biological_process | Any process that modulates the frequency, rate or extent of actin filament binding. |
| negative regulation of actin filament binding | (GO:1904530) | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of actin filament binding. |
| positive regulation of actin filament binding | (GO:1904531) | biological_process | Any process that activates or increases the frequency, rate or extent of actin filament binding. |
| actin fusion focus assembly | (GO:1904600) | biological_process | The aggregation, arrangement and bonding together of a set of components to form an actin fusion focus. |
| protein localization to actin fusion focus | (GO:1904601) | biological_process | A process in which a protein is transported to, or maintained in, a location within an actin fusion focus. |
| regulation of actin binding | (GO:1904616) | biological_process | Any process that modulates the frequency, rate or extent of actin binding. |
| negative regulation of actin binding | (GO:1904617) | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of actin binding. |
| positive regulation of actin binding | (GO:1904618) | biological_process | Any process that activates or increases the frequency, rate or extent of actin binding. |
| regulation of actin-dependent ATPase activity | (GO:1904621) | biological_process | Any process that modulates the frequency, rate or extent of actin-dependent ATPase activity. |
| negative regulation of actin-dependent ATPase activity | (GO:1904622) | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of actin-dependent ATPase activity. |
| positive regulation of actin-dependent ATPase activity | (GO:1904623) | biological_process | Any process that activates or increases the frequency, rate or extent of actin-dependent ATPase activity. |
| actin filament polymerization involved in mitotic actomyosin contractile ring assembly | (GO:1904670) | biological_process | Any actin filament polymerization that is involved in mitotic actomyosin contractile ring assembly. |
| regulation of modification of postsynaptic actin cytoskeleton | (GO:1905274) | biological_process | Any process that modulates the frequency, rate or extent of modification of postsynaptic actin cytoskeleton. |
| obsolete actin filament organization involved in mitotic cytokinetic actomyosin contractile ring assembly | (GO:1990495) | biological_process | OBSOLETE. An actin filament organization process that contributes to actomyosin contractile ring assembly during mitotic cytokinesis. This term was obsoleted at the TermGenie Gatekeeper stage. |
| obsolete regulation of actin filament organization involved in mitotic cytokinetic actomyosin contractile ring assembly | (GO:1990496) | biological_process | OBSOLETE. An actin filament organization process that contributes to regulation of actomyosin contractile ring assembly during mitotic cytokinesis. This term was obsoleted at the TermGenie Gatekeeper stage. |
| response to prolactin | (GO:1990637) | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a prolactin stimulus. The anterior pituitary hormone prolactin has a number of roles including being essential for lactation. |
| cellular response to prolactin | (GO:1990646) | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a prolactin stimulus. |
| actin fusion focus | (GO:1990819) | cellular_component | A focus at the mating projection tip where the cell wall is degraded during conjugation with cellular fusion. Actin filaments form an aster-like structure from this location. |
| actin cytoskeleton-regulatory complex | (GO:1990964) | cellular_component | A protein complex probably required for the internalization of endosomes during actin-coupled endocytosis. Links the site of endocytosis to the cell membrane-associated actin cytoskeleton, coordinating ARP2/3 stimulation at the later stages of endocytosis. Present in the late endocytic coat. |
| transmembrane actin-associated (TAN) line | (GO:1990973) | cellular_component | A linear array of nuclear envelope membrane proteins composed of nesprin-2G and SUN2, which couple the nucleus to moving actin cables, resulting in rearward nuclear transport (away from the leading edge). |
| actin-dependent nuclear migration | (GO:1990974) | biological_process | The process whereby the centrosome is held at the cell center while the nucleus moves to the cell rear by actin retrograde flow resulting in the position of the centrosome between the nucleus and the leading edge of the cell. |
| regulation of actin cytoskeleton reorganization | (GO:2000249) | biological_process | Any process that modulates the frequency, rate or extent of actin cytoskeleton reorganization. |
| negative regulation of actin cytoskeleton reorganization | (GO:2000250) | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of actin cytoskeleton reorganization. |
| positive regulation of actin cytoskeleton reorganization | (GO:2000251) | biological_process | Any process that activates or increases the frequency, rate or extent of actin cytoskeleton reorganization. |
| positive regulation of Arp2/3 complex-mediated actin nucleation | (GO:2000601) | biological_process | Any process that activates or increases the frequency, rate or extent of Arp2/3 complex-mediated actin nucleation. |
| actomyosin contractile ring assembly actin filament organization | (GO:2000689) | biological_process | An actin filament organization process that contributes to actomyosin contractile ring assembly during cytokinesis. |
| regulation of barbed-end actin filament capping | (GO:2000812) | biological_process | Any process that modulates the frequency, rate or extent of barbed-end actin filament capping. |
| negative regulation of barbed-end actin filament capping | (GO:2000813) | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of barbed-end actin filament capping. |
| positive regulation of barbed-end actin filament capping | (GO:2000814) | biological_process | Any process that activates or increases the frequency, rate or extent of barbed-end actin filament capping. |
| sulfate assimilation | (GO:0000103) | biological_process | The pathways by which inorganic sulfate is processed and incorporated into sulfated compounds. |
| microfilament motor activity | (GO:0000146) | molecular_function | Catalysis of movement along a microfilament, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP). |
| GTPase activity | (GO:0003924) | molecular_function | Catalysis of the reaction: GTP + H2O = GDP + phosphate. |
| stress fiber | (GO:0001725) | cellular_component | A contractile actin filament bundle that consists of short actin filaments with alternating polarity, cross-linked by alpha-actinin and possibly other actin bundling proteins, and with myosin present in a periodic distribution along the fiber. |
| ATPase activity, coupled to transmembrane movement of substances | (GO:0042626) | molecular_function | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. |
| peptidase activity | (GO:0008233) | molecular_function | Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. |
| death receptor binding | (GO:0005123) | molecular_function | Interacting selectively and non-covalently with any member of the death receptor (DR) family. The DR family falls within the tumor necrosis factor receptor superfamily and is characterized by a cytoplasmic region of ~80 residues termed the death domain (DD). |
| oxidoreductase activity | (GO:0016491) | molecular_function | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. |
| omega peptidase activity | (GO:0008242) | molecular_function | Catalysis of the removal of terminal peptide residues that are substituted, cyclized or linked by isopeptide bonds (peptide linkages other than those of alpha-carboxyl to alpha-amino groups). |
| enterochelin esterase activity | (GO:0008849) | molecular_function | Catalysis of the reaction: enterobactin + 3 H2O = 3 N-23-dihydroxybenzoyl-L-serine + 3 H+. |
| racemase and epimerase activity | (GO:0016854) | molecular_function | Catalysis of a reaction that alters the configuration of one or more chiral centers in a molecule. |
| obsolete Hsc70 protein regulator activity | (GO:0017078) | molecular_function | OBSOLETE. Binds to and modulates the activity of the molecular chaperone Hsc70. This term was made obsolete because it refers to a non-existent molecular function term, 'Hsp70 protein activity'. |
| protein-histidine N-methyltransferase activity | (GO:0018064) | molecular_function | Catalysis of the reaction: S-adenosyl-L-methionine + protein L-histidine = S-adenosyl-L-homocysteine + protein N-methyl-L-histidine. |
| GTPase regulator activity | (GO:0030695) | molecular_function | Modulates the rate of GTP hydrolysis by a GTPase. |
| XCR1 chemokine receptor binding | (GO:0031738) | molecular_function | Interacting selectively and non-covalently with a XCR1 chemokine receptor. |
| NHE3/E3KARP/ACTN4 complex | (GO:0032766) | cellular_component | A heterotrimeric protein complex formed by the association of NHE3, E3KARP and alpha-actinin upon an increase in calcium ion concentration; found in clusters localized on plasma membrane and in intracellular compartments. |
| phosphatidylcholine phospholipase C activity | (GO:0034480) | molecular_function | Catalysis of the reaction: phosphatidylcholine + H2O = 1,2-diacylglycerol + a choline phosphate. |
| host cell surface receptor binding | (GO:0046789) | molecular_function | Interacting selectively and non-covalently with a receptor on the host cell surface. |
| stress fiber assembly | (GO:0043149) | biological_process | The aggregation, arrangement and bonding together of a set of components to form a stress fiber. A stress fiber is a contractile actin filament bundle that consists of short actin filaments with alternating polarity. |
| inositol 3-alpha-galactosyltransferase activity | (GO:0047216) | molecular_function | Catalysis of the reaction: myo-inositol + UDP-galactose = O-alpha-D-galactosyl-(1,3)-1D-myo-inositol + UDP. |
| fractalkine biosynthetic process | (GO:0050751) | biological_process | The chemical reactions and pathways resulting in the formation of fractalkine, a chemokine involved in the control of the key regulatory mechanisms of cell trafficking at sites of inflammation. It exists as a secreted protein and in a membrane-bound form, and exhibits a novel C-X-X-X-C cysteine signature motif. The counterpart of human fractalkine is murine neurotactin; fractalkine is also referred to as CX3C membrane-anchored chemokine or ABCD-3 and has been renamed CX3CL1. |
| regulation of fractalkine biosynthetic process | (GO:0050752) | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of fractalkine, a chemokine involved in the control of the key regulatory mechanisms of cell trafficking at sites of inflammation. |
| negative regulation of fractalkine biosynthetic process | (GO:0050753) | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of fractalkine, a chemokine involved in the control of the key regulatory mechanisms of cell trafficking at sites of inflammation. |
| positive regulation of fractalkine biosynthetic process | (GO:0050754) | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of fractalkine, a chemokine involved in the control of the key regulatory mechanisms of cell trafficking at sites of inflammation. |
| fractalkine metabolic process | (GO:0050756) | biological_process | The chemical reactions and pathways involving fractalkine, a chemokine involved in the control of the key regulatory mechanisms of cell trafficking at sites of inflammation. It exists as a secreted protein and in a membrane-bound form, and exhibits a novel C-X-X-X-C cysteine signature motif. The counterpart of human fractalkine is murine neurotactin; fractalkine is also referred to as CX3C membrane-anchored chemokine or ABCD-3 and has been renamed CX3CL1. |
| FATZ binding | (GO:0051373) | molecular_function | Interacting selectively and non-covalently with a member of the FATZ family of proteins, filamin-, actinin-, and telethonin-binding proteins of the Z-disc of striated muscle. FATZ proteins are located in the Z-disc of the sarcomere and are involved in a complex network of interactions with other Z-band components. |
| obsolete ALP binding | (GO:0051411) | molecular_function | OBSOLETE. Interacting selectively and non-covalently wih ALP, actinin-associated LIM protein of the Z band. ALP is a PDZ/LIM domain protein found in the Z band. This term was made obsolete because it represents binding to an individual protein. |
| PTB domain binding | (GO:0051425) | molecular_function | Interacting selectively and non-covalently with a phosphotyrosine-binding (PTB) domain of a protein. |
| cytosine C-5 DNA demethylase activity | (GO:0051747) | molecular_function | Catalysis of the reaction: methyl-dCpdG DNA + H2O = dCpdG DNA + methanol. This reaction is the hydrolytic removal of the methyl group on the 5 position of cytosine in DNA. |
| peptidyl-lysine acetyltransferase activity | (GO:0052858) | molecular_function | Catalysis of the reaction: acetyl phosphate + peptidyl-L-lysine = phosphate + peptidyl-N6-acetyl-L-lysine. |
| minus-end directed microfilament motor activity | (GO:0060001) | molecular_function | Catalysis of movement along a microfilament towards the minus end, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP). The minus end of an actin filament is the end that does not preferentially add actin monomers. |
| plus-end directed microfilament motor activity | (GO:0060002) | molecular_function | Catalysis of movement along a microfilament towards the plus end, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP). The plus end of an actin filament is the end that preferentially adds actin monomers. |
| intranuclear rod | (GO:0061836) | cellular_component | A macromolecular fiber consisting of actin and cofilin that is formed in the nucleus as a consequence of chemical or mechanical stress conditions. |
| investment cone | (GO:0070865) | cellular_component | A cytoskeletal part that consists of a microfilament-rich cone that forms round each nucleus in a spermatogenic cyst and translocates the length of the cyst during sperm individualization. |
| FAR/SIN/STRIPAK complex | (GO:0090443) | cellular_component | A conserved protein phosphatase type 2A complex which contains a protein phosphatase type 2A, a protein phosphatase regulatory subunit, a striatin, an FHA domain protein and other subunits (at least six proteins). In fission yeast this complex negatively regulate the septation initiation network at the spindle pole body. |
| deaminated base DNA N-glycosylase activity | (GO:0097506) | molecular_function | DNA N-glycosylase activity acting on deaminated bases. |
| regulation of microfilament motor activity | (GO:0120079) | biological_process | Any process that modulates the frequency, rate or extent of microfilament motor activity. |
| negative regulation of microfilament motor activity | (GO:0120080) | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of microfilament motor activity. |
| positive regulation of microfilament motor activity | (GO:0120081) | biological_process | Any process that activates or increases the frequency, rate or extent of microfilament motor activity. |
| regulation of sulfate assimilation | (GO:1900058) | biological_process | Any process that modulates the frequency, rate or extent of sulfate assimilation. |
| positive regulation of sulfate assimilation | (GO:1900059) | biological_process | Any process that activates or increases the frequency, rate or extent of sulfate assimilation. |
| positive regulation of sulfate assimilation by positive regulation of transcription from RNA polymerase II promoter | (GO:1900478) | biological_process | Any process that activates or increases the frequency, rate or extent of sulfate assimilation by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter. |
| 4-(trimethylammonio)butanoate transport | (GO:1900751) | biological_process | The directed movement of a 4-(trimethylammonio)butanoate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
| regulation of plus-end directed microfilament motor activity | (GO:1904110) | biological_process | Any process that modulates the frequency, rate or extent of plus-end directed microfilament motor activity. |
| negative regulation of plus-end directed microfilament motor activity | (GO:1904111) | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of plus-end directed microfilament motor activity. |
| positive regulation of plus-end directed microfilament motor activity | (GO:1904112) | biological_process | Any process that activates or increases the frequency, rate or extent of plus-end directed microfilament motor activity. |
| intranuclear rod assembly | (GO:1905861) | biological_process | The aggregation, arrangement and bonding together of a set of components to form an intranuclear rod. |
| protein binding involved in protein folding | (GO:0044183) | molecular_function | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) that contributes to the process of protein folding. |
| unfolded protein binding | (GO:0051082) | molecular_function | Interacting selectively and non-covalently with an unfolded protein. |
| acyl binding | (GO:0000035) | molecular_function | Interacting selectively and non-covalently with an acyl group, any group formally derived by removal of the hydroxyl group from the acid function of a carboxylic acid. |
| tRNA binding | (GO:0000049) | molecular_function | Interacting selectively and non-covalently with transfer RNA. |
| fatty-acyl-CoA binding | (GO:0000062) | molecular_function | Interacting selectively and non-covalently with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group. |
| morphogenesis checkpoint | (GO:0044879) | biological_process | A mitotic cell cycle checkpoint which delays mitotic onset in response to perturbations that affect cell shape via the actin cytoskeleton, septin organization, small cell size, and/or the extent of membrane growth. |
| incipient cellular bud site | (GO:0000131) | cellular_component | The portion of the budding yeast plasma membrane where a daughter cell will emerge. The yeast marks this spot with bud-site selection proteins before bud emergence occurs. Actin is polarized to this spot just prior to and during bud emergence. |
| polarisome | (GO:0000133) | cellular_component | Protein complex that plays a role in determining cell polarity by directing the localized assembly of actin filaments at polarization sites; in Saccharomyces the polarisome includes Bni1p, Spa2p, Pea2p, and Bud6p. |
| cellular bud neck contractile ring | (GO:0000142) | cellular_component | A contractile ring, i.e. a cytoskeletal structure composed of actin filaments and myosin, that forms beneath the plasma membrane at the mother-bud neck in mitotic cells that divide by budding in preparation for completing cytokinesis. An example of this structure is found in Saccharomyces cerevisiae. |
| SNARE binding | (GO:0000149) | molecular_function | Interacting selectively and non-covalently with a SNARE (soluble N-ethylmaleimide-sensitive factor attached protein receptor) protein. |
| nucleotide binding | (GO:0000166) | molecular_function | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. |
| rDNA binding | (GO:0000182) | molecular_function | Interacting selectively and non-covalently with DNA sequences encoding ribosomal RNA. |
| protein binding | (GO:0005515) | molecular_function | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
| DNA secondary structure binding | (GO:0000217) | molecular_function | Interacting selectively and non-covalently with DNA containing secondary structure elements such as four-way junctions, bubbles, loops, Y-form DNA, or double-strand/single-strand junctions. |
| peroxisome targeting sequence binding | (GO:0000268) | molecular_function | Interacting selectively and non-covalently with a peroxisomal targeting sequence, any of several sequences of amino acids within a protein that can act as a signal for the localization of the protein into the peroxisome. |
| magnesium ion binding | (GO:0000287) | molecular_function | Interacting selectively and non-covalently with magnesium (Mg) ions. |
| RNA cap binding | (GO:0000339) | molecular_function | Interacting selectively and non-covalently with a 7-methylguanosine (m7G) group or derivative located at the 5' end of an RNA molecule. |
| RNA 7-methylguanosine cap binding | (GO:0000340) | molecular_function | Interacting selectively and non-covalently with the 7-methylguanosine group added cotranscriptionally to the 5' end of RNA molecules transcribed by polymerase II. |
| RNA trimethylguanosine cap binding | (GO:0000341) | molecular_function | Interacting selectively and non-covalently with the trimethylguanosine (m(3)(2,2,7)-GTP) group located at the 5' end of some RNA molecules. Such trimethylated cap structures, generally produced by posttranscriptional modification of a 7-methylguanosine cap, are often found on snRNAs and snoRNAs transcribed by RNA polymerase II, but have also be found on snRNAs transcribed by RNA polymerase III. They have also been found on a subset of the mRNA population in some species, e.g. C. elegans. |
| RNA cap 4 binding | (GO:0000342) | molecular_function | Interacting selectively and non-covalently with a hypermethylated cap structure consisting of 7-methylguanosine (m(7)G) followed by four methylated nucleotides (cap 4): 7-methylguanosine-ppp-N6, N6, 2'-O-trimethyladenosine-p-2'-O-methyladenosine-p-2'-O-methylcytosine-p-N3, 2'-O-dimethyluridine Such caps are known to be found at the 5' ends of SL RNAs of trypanosomatid protozoa. |
| four-way junction DNA binding | (GO:0000400) | molecular_function | Interacting selectively and non-covalently with DNA containing four-way junctions, also known as Holliday junctions, a structure where two DNA double strands are held together by reciprocal exchange of two of the four strands, one strand each from the two original helices. |
| open form four-way junction DNA binding | (GO:0000401) | molecular_function | Interacting selectively and non-covalently with DNA containing the open form of a four-way junction, also known as a Holliday junction, a structure where two DNA double strands are held together by reciprocal exchange of two of the four strands, one strand each from the two original helices. The open form of a four-way junction can be diagrammed without any of the strands crossing over. |
| crossed form four-way junction DNA binding | (GO:0000402) | molecular_function | Interacting selectively and non-covalently with DNA containing the crossed form of a four-way junction, also known as a Holliday junction, a structure where two DNA double strands are held together by reciprocal exchange of two of the four strands, one strand each from the two original helices. The crossed form of a four-way junction cannot be diagrammed without any of the strands crossing over, and instead contains a single crossover between two of the strands. |
| Y-form DNA binding | (GO:0000403) | molecular_function | Interacting selectively and non-covalently with segment of DNA shaped like a Y. This shape occurs when DNA contains a region of paired double-stranded DNA on one end and a region of unpaired DNA strands on the opposite end. |
| heteroduplex DNA loop binding | (GO:0000404) | molecular_function | Interacting selectively and non-covalently with DNA containing a loop. A loop occurs when DNA contains a large insertion or deletion that causes a region of unpaired single-stranded DNA to loop out, while the rest of the DNA is in a paired double-stranded configuration. |
| bubble DNA binding | (GO:0000405) | molecular_function | Interacting selectively and non-covalently with DNA that contains a bubble. A bubble occurs when DNA contains a region of unpaired, single-stranded DNA flanked on both sides by regions of paired, double-stranded DNA. |
| double-strand/single-strand DNA junction binding | (GO:0000406) | molecular_function | Interacting selectively and non-covalently with a region of DNA that contains double-stranded DNA flanked by a region of single-stranded DNA. |
| nucleoplasmic THO complex | (GO:0000446) | cellular_component | The THO complex when it is acting as a nuclear complex that is required for transcription elongation through genes containing tandemly repeated DNA sequences. In S. cerevisiae, it is composed of four subunits: Hpr1, Tho2, Thp2, and Mft1, while the human complex is composed of 7 subunits. |
| base pairing | (GO:0000496) | molecular_function | Interacting selectively and non-covalently with nucleic acid via hydrogen bonds between the bases of a gene product molecule and the bases of a target nucleic acid molecule. |
| base pairing with DNA | (GO:0000497) | molecular_function | Interacting selectively and non-covalently with nucleic acid via hydrogen bonds between the bases of a gene product molecule and the bases of a target DNA molecule. |
| base pairing with RNA | (GO:0000498) | molecular_function | Interacting selectively and non-covalently with ribonucleic acid (RNA) via hydrogen bonds between the bases of a gene product molecule and the bases of a target RNA molecule. |
| base pairing with mRNA | (GO:0000499) | molecular_function | Interacting selectively and non-covalently with messenger ribonucleic acid (mRNA) via hydrogen bonds between the bases of a gene product molecule and the bases of a target mRNA molecule. |
| inositol hexakisphosphate binding | (GO:0000822) | molecular_function | Interacting selectively and non-covalently with inositol hexakisphosphate. |
| assembly of actomyosin apparatus involved in cytokinesis | (GO:0000912) | biological_process | The assembly and arrangement of an apparatus composed of actin, myosin, and associated proteins that will function in cytokinesis. |
| phragmoplast assembly | (GO:0000914) | biological_process | The formation of a structure composed of actin, myosin, and associated proteins that will function in cytokinesis in cells that perform cytokinesis by cell plate formation. The structure usually contains antiparallel microtubules and membrane (often visible as vesicles). |
| actomyosin contractile ring assembly | (GO:0000915) | biological_process | The process of assembly of a ring composed of actin, myosin, and associated proteins that will function in cytokinesis. |
| equatorial microtubule organizing center | (GO:0000923) | cellular_component | A microtubule organizing center formed by a band of gamma-tubulin that is recruited to a circumferential band of F-actin at the midpoint of a cell and which nucleates microtubules from the cell division site at the end of mitosis. |
| base pairing with rRNA | (GO:0000944) | molecular_function | Interacting selectively and non-covalently with ribosomal ribonucleic acid (rRNA) via hydrogen bonds between the bases of a gene product molecule and the bases of a target rRNA molecule. |
| base pairing with snRNA | (GO:0000945) | molecular_function | Interacting selectively and non-covalently with small nuclear ribonucleic acid (snRNA) via hydrogen bonds between the bases of a gene product molecule and the bases of a target snRNA molecule. |
| base pairing with tRNA | (GO:0000946) | molecular_function | Interacting selectively and non-covalently with transfer ribonucleic acid (mRNA) via hydrogen bonds between the bases of a gene product molecule and the bases of a target tRNA molecule. |
| transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery | (GO:0000972) | biological_process | The chromosome organization process in which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript. |
| transcription regulatory region sequence-specific DNA binding | (GO:0000976) | molecular_function | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon. |
| RNA polymerase II regulatory region sequence-specific DNA binding | (GO:0000977) | molecular_function | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. |
| RNA polymerase II proximal promoter sequence-specific DNA binding | (GO:0000978) | molecular_function | Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter of a gene transcribed by RNA polymerase II. The proximal promoter is in cis with and relatively close to the core promoter. |
| RNA polymerase II core promoter sequence-specific DNA binding | (GO:0000979) | molecular_function | Interacting selectively and non-covalently with a DNA sequence that is part of the core promoter of a RNA polymerase II-transcribed gene. |
| RNA polymerase II distal enhancer sequence-specific DNA binding | (GO:0000980) | molecular_function | Interacting selectively and non-covalently with a RNA polymerase II (Pol II) distal enhancer. In mammalian cells, enhancers are distal sequences that increase the utilization of some promoters, and can function in either orientation and in any location (upstream or downstream) relative to the core promoter. |
| transcription factor activity, RNA polymerase II proximal promoter sequence-specific DNA binding | (GO:0000982) | molecular_function | Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) in order to modulate transcription by RNAP II. |
| transcription factor activity, RNA polymerase II core promoter sequence-specific DNA binding | (GO:0000983) | molecular_function | Interacting selectively and non-covalently with a specific DNA sequence in an RNA polymerase II (Pol II) core promoter, the region composed of the transcription start site and binding sites for transcription factors of the Pol II basal transcription machinery, in order to modulate transcription by Pol II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. |
| bacterial-type RNA polymerase regulatory region sequence-specific DNA binding | (GO:0000984) | molecular_function | Interacting selectively and non-covalently with a sequence of DNA that is part of a regulatory region that controls the transcription of a gene or operon by a bacterial-type RNA polymerase. |
| bacterial-type RNA polymerase core promoter sequence-specific DNA binding | (GO:0000985) | molecular_function | Interacting selectively and non-covalently with a DNA sequence that is part of the core promoter of a bacterial gene. |
| bacterial-type proximal promoter sequence-specific DNA binding | (GO:0000986) | molecular_function | Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter of a bacterial gene (or cistron, or operon). The proximal promoter is in cis with and relatively close to the core promoter. |
| proximal promoter sequence-specific DNA binding | (GO:0000987) | molecular_function | Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter. The proximal promoter is in cis with and relatively close to the core promoter. |
| obsolete transcription factor activity, protein binding | (GO:0000988) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent. For more details see https://github.com/geneontology/go-ontology/issues/16053 |
| obsolete transcription factor activity, transcription factor binding | (GO:0000989) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with a specific transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent. For more details see https://github.com/geneontology/go-ontology/issues/16053 |
| transcription factor binding | (GO:0008134) | molecular_function | Interacting selectively and non-covalently with a transcription factor, any protein required to initiate or regulate transcription. |
| obsolete transcription factor activity, core RNA polymerase binding | (GO:0000990) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with an RNA polymerase in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent. For more details see https://github.com/geneontology/go-ontology/issues/16053 |
| RNA polymerase core enzyme binding | (GO:0043175) | molecular_function | Interacting selectively and non-covalently with an RNA polymerase core enzyme, containing a specific subunit composition defined as the core enzyme. |
| obsolete transcription factor activity, core RNA polymerase II binding | (GO:0000991) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with an RNA polymerase II (Pol II) complex, typically composed of twelve subunits, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent. For more details see https://github.com/geneontology/go-ontology/issues/16053 |
| RNA polymerase II complex binding | (GO:0000993) | molecular_function | Interacting selectively and non-covalently with RNA polymerase II core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of twelve subunits. |
| polymerase III regulatory region sequence-specific DNA binding | (GO:0000992) | molecular_function | Interacting selectively and non-covalently with a sequence of DNA that is part of a regulatory region that controls transcription by RNA polymerase III. The transcribed region might be contain a single gene or a cistron containing multiple genes. |
| RNA polymerase III core binding | (GO:0000994) | molecular_function | Interacting selectively and non-covalently with RNA polymerase III core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of seventeen subunits. |
| bacterial-type RNA polymerase core enzyme binding | (GO:0001000) | molecular_function | Interacting selectively and non-covalently with the bacterial-type RNA polymerase core enzyme, typically consisting of two alpha, one beta, one beta prime, and one omega subunit. |
| mitochondrial single-subunit type RNA polymerase binding | (GO:0001001) | molecular_function | Interacting selectively and non-covalently with a single subunit mitochondrial RNA polymerase enzyme, which is composed of a single catalytic subunit similar to the RNA polymerase enzymes from phages T3, T7, and SP6. |
| RNA polymerase III type 1 promoter sequence-specific DNA binding | (GO:0001002) | molecular_function | Interacting selectively and non-covalently with a sequence of DNA that is a part of a type 1 promoter that controls transcription by RNA polymerase III. Type 1 promoters are found in 5S rRNA genes, downstream of the transcription start site within the sequence of the mature RNA, and require TFIIIA for recognition. |
| RNA polymerase III type 2 promoter sequence-specific DNA binding | (GO:0001003) | molecular_function | Interacting selectively and non-covalently with a sequence of DNA that is a part of a type 2 promoter that controls transcription by RNA polymerase III. Type 2 promoters consist of an A box and a B box downstream of the transcription start site within the sequence within the sequence of the mature RNA. Type 2 promoters are found in many tRNA genes as well as in other small RNAs. |
| RNA polymerase III type 3 promoter sequence-specific DNA binding | (GO:0001006) | molecular_function | Interacting selectively and non-covalently with a sequence of DNA that is a part of a type 3 promoter that controls transcription by RNA polymerase III (Pol III). A type 3 Pol III promoter is composed of elements upstream of the transcription start site, including a TATA box. The human U6 snRNA gene has a type 3 promoter. Type 3 Pol III promoters have not been observed in S. cerevisiae. |
| obsolete transcription factor activity, RNA polymerase III transcription factor binding | (GO:0001007) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with an RNA polymerase III transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. |
| transcription factor activity, sequence-specific DNA binding, RNA polymerase recruiting | (GO:0001011) | molecular_function | Interacting selectively and non-covalently with a specific DNA sequence and recruiting RNA polymerase to the DNA in order to form the preinitiation complex (PIC). |
| RNA polymerase II regulatory region DNA binding | (GO:0001012) | molecular_function | Interacting selectively and non-covalently with a DNA region that controls the transcription of a region of DNA by RNA polymerase II. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors. |
| RNA polymerase I regulatory region DNA binding | (GO:0001013) | molecular_function | Interacting selectively and non-covalently with a DNA region that controls the transcription of a region of DNA by RNA polymerase I. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors. |
| RNA polymerase III regulatory region DNA binding | (GO:0001016) | molecular_function | Interacting selectively and non-covalently with a DNA region that controls the transcription of a gene by RNA polymerase III. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors. |
| bacterial-type RNA polymerase regulatory region DNA binding | (GO:0001017) | molecular_function | Interacting selectively and non-covalently with a DNA region that controls the transcription of a gene or operon by a bacterial-type RNA polymerase. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors. |
| mitochondrial promoter sequence-specific DNA binding | (GO:0001018) | molecular_function | Interacting selectively and non-covalently with a DNA region that controls the transcription of the mitochondrial DNA. |
| plastid RNA polymerase regulatory region DNA binding | (GO:0001019) | molecular_function | Interacting selectively and non-covalently with a DNA region that controls the transcription of a region of DNA by a plastid RNA polymerase. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors. |
| RNA polymerase III transcription factor binding | (GO:0001025) | molecular_function | Interacting selectively and non-covalently with an RNA polymerase III transcription factor, any protein required to initiate or regulate transcription by RNA polymerase III. |
| obsolete TFIIIB-type transcription factor activity | (GO:0001026) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with an RNA polymerase III (Pol III) complex, typically composed of seventeen subunits, and with another protein, macromolecule, or complex, permitting those molecules to function in a coordinated way, Once recruited to an RNA polymerase III promoter by one or more other transcription factors, binds to DNA, recruits RNA polymerase III and facilitates the transition from the closed to the open complex. This term was obsoleted because it represents a gene product. |
| obsolete RNA polymerase III type 1 promoter TFIIIB-type transcription factor activity | (GO:0001027) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with an RNA polymerase III (Pol III) complex, typically composed of seventeen subunits, and with another protein, macromolecule, or complex, permitting those molecules to function in a coordinated way. Once recruited to an RNA polymerase III type 1 promoter by TFIIIA-type and TFIIIC-type factors, binds to DNA, recruits RNA polymerase III and facilitates the transition from the closed to the open complex. The reason for obsoletion is that there is a single TFIIIB activity; this is not dependent on the promoter. |
| obsolete RNA polymerase III type 2 promoter TFIIIB-type transcription factor activity | (GO:0001028) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with an RNA polymerase III (Pol III) complex, typically composed of seventeen subunits, and with another protein, macromolecule, or complex, permitting those molecules to function in a coordinated way. Once recruited to an RNA polymerase III type 2 promoter by a TFIIIC-type factor, binds to DNA, recruits RNA polymerase III and facilitates the transition from the closed to the open complex. The reason for obsoletion is that there is a single TFIIIB activity; this is not dependent on the promoter. |
| obsolete RNA polymerase III type 3 promoter TFIIIB-type transcription factor activity | (GO:0001029) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with an RNA polymerase III (Pol III) complex, typically composed of seventeen subunits, and with another protein, macromolecule, or complex, permitting those molecules to function in a coordinated way. Once recruited to an RNA polymerase III type 3 promoter by SNAP-type and TFIIIC-type factors, binds to DNA, recruits RNA polymerase III and facilitates the transition from the closed to the open complex. |
| RNA polymerase III type 1 promoter DNA binding | (GO:0001030) | molecular_function | Interacting selectively and non-covalently with a region of DNA that is a part of a type 1 promoter that controls transcription by RNA polymerase III. Type 1 promoters are found in 5S rRNA genes, downstream of the transcription start site within the sequence of the mature RNA, and require TFIIIA for recognition. |
| RNA polymerase III type 2 promoter DNA binding | (GO:0001031) | molecular_function | Interacting selectively and non-covalently with a region of DNA that is a part of a type 2 promoter that controls transcription by RNA polymerase III. Type 2 promoters consist of an A box and a B box downstream of the transcription start site within the sequence within the sequence of the mature RNA. Type 2 promoters are found in many tRNA genes as well as in other small RNAs. |
| RNA polymerase III type 3 promoter DNA binding | (GO:0001032) | molecular_function | Interacting selectively and non-covalently with a region of DNA that is a part of a type 3 promoter that controls transcription by RNA polymerase III. A type 3 Pol III promoter is composed of elements upstream of the transcription start site, including a TATA box. The human U6 snRNA gene has a type 3 promoter. Type 3 Pol III promoters have not been observed in S. cerevisiae. |
| RNA polymerase III hybrid type promoter DNA binding | (GO:0001037) | molecular_function | Interacting selectively and non-covalently with a region of DNA that is a part of a hybrid promoter that controls transcription by RNA polymerase III (Pol III). A hybrid Pol III promoter contains both regulatory elements both upstream and downstream of the transcription initiation site. An example gene with such a promoter is the S. cerevisiae U6 gene. |
| RNA polymerase III hybrid type promoter sequence-specific DNA binding | (GO:0001039) | molecular_function | Interacting selectively and non-covalently with a sequence of DNA that is a part of a hybrid type promoter that controls transcription by RNA polymerase III (Pol III). A hybrid Pol III promoter contains both regulatory elements both upstream and downstream of the transcription initiation site. An example gene with such a promoter is the S. cerevisiae U6 gene. |
| obsolete RNA polymerase III hybrid type promoter TFIIIB-type transcription factor activity | (GO:0001040) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with an RNA polymerase III (Pol III) complex, typically composed of seventeen subunits, and with another protein, macromolecule, or complex, permitting those molecules to function in a coordinated way. Once recruited to an RNA polymerase III hybrid type promoter, binds to DNA, recruits RNA polymerase III and facilitates the transition from the closed to the open complex. The reason for obsoletion is that there is a single TFIIIB activity; this is not dependent on the promoter. |
| RNA polymerase I core binding | (GO:0001042) | molecular_function | Interacting selectively and non-covalently with RNA polymerase I core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of seventeen subunits. |
| core promoter sequence-specific DNA binding | (GO:0001046) | molecular_function | Interacting selectively and non-covalently with a sequence of DNA that is part of a core promoter region. The core promoter is composed of the transcription start site and binding sites for the RNA polymerase and the basal transcription machinery. The transcribed region might be described as a gene, cistron, or operon. |
| core promoter binding | (GO:0001047) | molecular_function | Interacting selectively and non-covalently with the regulatory region composed of the transcription start site and binding sites for the basal transcription machinery. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors. |
| RNA polymerase IV core binding | (GO:0001048) | molecular_function | Interacting selectively and non-covalently with RNA polymerase IV core enzyme, a multisubunit eukaryotic nuclear RNA polymerase found in plants and involved in siRNA production. |
| RNA polymerase V core binding | (GO:0001049) | molecular_function | Interacting selectively and non-covalently with RNA polymerase V core enzyme, a multisubunit eukaryotic nuclear RNA polymerase found in plants and involved in production of noncoding transcripts at target loci for silencing. |
| single-subunit type RNA polymerase binding | (GO:0001050) | molecular_function | Interacting selectively and non-covalently with a single subunit RNA polymerase enzyme, which is composed of a single catalytic subunit similar to the RNA polymerase enzymes from phages T3, T7, and SP6. |
| plastid single-subunit type RNA polymerase binding | (GO:0001051) | molecular_function | Interacting selectively and non-covalently with a single subunit plastid RNA polymerase enzyme, which is composed of a single catalytic subunit similar to the RNA polymerase enzymes from phages T3, T7, and SP6. |
| plastid PEP RNA polymerase core enzyme binding | (GO:0001052) | molecular_function | Interacting selectively and non-covalently with the bacterial-type plastid PEP RNA polymerase core enzyme, typically consisting of two alpha, one beta, one beta prime, and one double prime subunit. |
| regulatory region nucleic acid binding | (GO:0001067) | molecular_function | Interacting selectively and non-covalently with a nucleic acid region that regulates a nucleic acid-based process. Such processes include transcription, DNA replication, and DNA repair. |
| transcription regulatory region RNA binding | (GO:0001068) | molecular_function | Interacting selectively and non-covalently with a RNA region within the transcript that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. |
| regulatory region RNA binding | (GO:0001069) | molecular_function | Interacting selectively and non-covalently with a RNA region that regulates a nucleic acid-based process. Such processes include transcription, DNA replication, and DNA repair. |
| RNA-binding transcription regulator activity | (GO:0001070) | molecular_function | Interacting selectively and non-covalently with an RNA sequence in order to modulate transcription. This function is known to occur in phages and viruses, for example the lambda N and the HIV tat proteins are necessary to allow RNA polymerase to read through terminator sequences. |
| transcription factor activity, RNA polymerase II proximal promoter sequence-specific DNA binding involved in preinitiation complex assembly | (GO:0001074) | molecular_function | Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) in order to promote assembly of the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription from an RNA polymerase II promoter. |
| transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly | (GO:0001075) | molecular_function | Interacting selectively and non-covalently with a specific DNA sequence in an RNA polymerase II (Pol II) core promoter, the region composed of the transcription start site and binding sites for transcription factors of the Pol II basal transcription machinery, in order to promote assembly of the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription from an RNA polymerase II promoter. |
| obsolete transcription factor activity, RNA polymerase II transcription factor binding | (GO:0001076) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with an RNA polymerase II transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent. For more details see https://github.com/geneontology/go-ontology/issues/16053 |
| RNA polymerase II transcription factor binding | (GO:0001085) | molecular_function | Interacting selectively and non-covalently with an RNA polymerase II transcription factor, any protein required to initiate or regulate transcription by RNA polymerase II. |
| obsolete transcription factor activity, RNA polymerase I transcription factor binding | (GO:0001082) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with an RNA polymerase I transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. |
| obsolete transcription factor activity, RNA polymerase II basal transcription factor binding | (GO:0001083) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with a basal RNA polymerase II transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. |
| obsolete transcription factor activity, TFIID-class binding | (GO:0001084) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with a basal RNA polymerase II transcription factor of the TFIID class in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well. This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. |
| TFIID-class transcription factor complex binding | (GO:0001094) | molecular_function | Interacting selectively and non-covalently with a general RNA polymerase II transcription factor belonging to the TFIID complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II. |
| obsolete transcription factor activity, TFIIA-class binding | (GO:0001086) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with a basal RNA polymerase II transcription factor of the TFIIA class in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well. This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. |
| TFIIA-class transcription factor complex binding | (GO:0001092) | molecular_function | Interacting selectively and non-covalently with a general RNA polymerase II transcription factor belonging to the TFIIA complex, one of the complexes involved in formation of the preinitiation complex (PIC) by RNA polymerase II and defined as a basal or general transcription factor. |
| obsolete transcription factor activity, TFIIB-class binding | (GO:0001087) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with a basal RNA polymerase II transcription factor of the TFIIB class in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well. This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. |
| TFIIB-class transcription factor binding | (GO:0001093) | molecular_function | Interacting selectively and non-covalently with a general RNA polymerase II transcription factor of the TFIIB class, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II. |
| obsolete transcription factor activity, TFIIE-class binding | (GO:0001088) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with a basal RNA polymerase II transcription factor of the TFIIE class in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well. This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. |
| TFIIE-class transcription factor complex binding | (GO:0001095) | molecular_function | Interacting selectively and non-covalently with a general RNA polymerase II transcription factor belonging to the TFIIE complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II. |
| obsolete transcription factor activity, TFIIF-class transcription factor binding | (GO:0001089) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with a basal RNA polymerase II transcription factor of the TFIIF class in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well. This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. |
| TFIIF-class transcription factor complex binding | (GO:0001096) | molecular_function | Interacting selectively and non-covalently with a general RNA polymerase II transcription factor belonging to the TFIIF complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II. |
| obsolete transcription factor activity, TFIIH-class binding | (GO:0001090) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with a basal RNA polymerase II transcription factor of the TFIIH class in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well. This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. |
| RNA polymerase II basal transcription factor binding | (GO:0001091) | molecular_function | Interacting selectively and non-covalently with a basal RNA polymerase II transcription factor, any of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II and defined as a basal or general transcription factor. |
| TFIIH-class transcription factor complex binding | (GO:0001097) | molecular_function | Interacting selectively and non-covalently with a general RNA polymerase II transcription factor belonging to the TFIIH complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II. |
| basal transcription machinery binding | (GO:0001098) | molecular_function | Interacting selectively and non-covalently with the basal transcription machinery which is composed of the RNA polymerase core enzyme and the basal transcription factor(s), the minimal set of factors required for formation of the preinitiation complex (PIC) by the RNA polymerase. |
| basal RNA polymerase II transcription machinery binding | (GO:0001099) | molecular_function | Interacting selectively and non-covalently with the basal transcription machinery for RNA polymerase II which is composed of the RNA polymerase II core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of twelve subunits, and the basal RNA polymerase II transcription factors, the minimal set of factors required for formation of the preinitiation complex (PIC) by the RNA polymerase. |
| response to acid chemical | (GO:0001101) | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by the chemical structure of the anion portion of a dissociated acid (rather than the acid acting as a proton donor). The acid chemical may be in gaseous, liquid or solid form. |
| RNA polymerase II activating transcription factor binding | (GO:0001102) | molecular_function | Interacting selectively and non-covalently with an RNA polymerase II transcription activating factor, a protein involved in positive regulation of transcription. |
| RNA polymerase II repressing transcription factor binding | (GO:0001103) | molecular_function | Interacting selectively and non-covalently with an RNA polymerase II transcription repressing factor, a protein involved in negative regulation of transcription. |
| bacterial-type RNA polymerase holo enzyme binding | (GO:0001108) | molecular_function | Interacting selectively and non-covalently with the basal transcription machinery which is composed of a bacterial-type RNA polymerase core enzyme and a sigma factor, the minimal set of factors required for formation of the preinitiation complex (PIC) by a bacterial-type RNA polymerase. |
| RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly | (GO:0001128) | molecular_function | Interacting selectively and non-covalently with an RNA polymerase II (RNAP II) regulatory transcription factor and also with the RNAP II basal transcription machinery in order to increase the frequency, rate or stability of the aggregation, arrangement and bonding together of proteins on RNA polymerase II promoter DNA to form the transcriptional preinitiation complex (PIC). Cofactors generally do not bind DNA, but rather mediate protein-protein interactions between activating transcription factors and the basal RNAP II transcription machinery. |
| obsolete RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly | (GO:0001129) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs), to facilitate the aggregation, arrangement and bonding together of proteins on RNA polymerase II promoter DNA to form the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription by RNA polymerase. The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent. For more details see https://github.com/geneontology/go-ontology/issues/16053 |
| bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding | (GO:0001130) | molecular_function | Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by bacterial-type RNA polymerase. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. |
| transcription factor activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding | (GO:0001131) | molecular_function | Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for a bacterial-type RNA polymerase in order to modulate transcription by bacterial-type RNA polymerase. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. |
| obsolete RNA polymerase II transcription factor activity, TBP-class protein binding | (GO:0001132) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs), in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well. The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent. For more details see https://github.com/geneontology/go-ontology/issues/16053 |
| RNA polymerase II complex recruiting activity | (GO:0001139) | molecular_function | Interacting selectively and non-covalently with an RNA polymerase II (Pol II) complex, typically composed of twelve subunits, and with another protein, macromolecule, or complex, permitting those molecules to function in a coordinated way in order to facilitate the aggregation, arrangement and bonding together of proteins on an RNA polymerase II promoter DNA to form the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription by RNA polymerase. |
| transcriptional activator activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding | (GO:0001140) | molecular_function | Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for a bacterial-type RNA polymerase in order to increase transcription by bacterial-type RNA polymerase. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. |
| transcriptional repressor activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding | (GO:0001141) | molecular_function | Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for a bacterial-type RNA polymerase in order to stop, prevent, or reduce the frequency, rate or extent of transcription from a bacterial-type RNA polymerase promoter. |
| mitochondrial RNA polymerase termination site sequence-specific DNA binding | (GO:0001145) | molecular_function | Interacting selectively and non-covalently with a DNA sequence that controls mitochondrial transcription termination. |
| transcription termination site sequence-specific DNA binding | (GO:0001147) | molecular_function | Interacting selectively and non-covalently with a sequence of DNA that promotes termination by RNA polymerase. The transcribed region might be described as a gene, cistron, or operon. |
| bacterial-type RNA polymerase termination site sequence-specific DNA binding | (GO:0001148) | molecular_function | Interacting selectively and non-covalently with a sequence of DNA that is a terminator for bacterial-type RNA polymerase. |
| transcription factor activity, bacterial-type RNA polymerase termination site sequence-specific binding | (GO:0001149) | molecular_function | Interacting selectively and non-covalently with a sequence of DNA that is a termination site for bacterial-type RNA polymerase in order to promote transcription termination by bacterial-type RNA polymerase. |
| bacterial-type RNA polymerase enhancer sequence-specific DNA binding | (GO:0001150) | molecular_function | Interacting selectively and non-covalently with a sequence of DNA that is an enhancer region that helps activate transcription of a gene or operon by a bacterial-type RNA polymerase. Enhancers for sigma-54 holoenzymes are typically located 80 to 150 base pairs upstream from the transcription start site, although they can be further away or may be downstream of the promoter. Some transcription units dependent on sigma-70 holoenzymes may also include enhancer sequences. |
| transcription factor activity, bacterial-type RNA polymerase transcription enhancer sequence-specific binding | (GO:0001151) | molecular_function | Interacting selectively and non-covalently with a sequence of DNA that is a bacterial-type enhancer region in order to activate transcription by bacterial-type RNA polymerase. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. Enhancers for sigma-54 holoenzymes are typically located 80 to 150 base pairs upstream from the transcription start site. Some transcription units dependent on sigma-70 holoenzymes may also include enhancer sequences. |
| TFIIIB-class transcription factor complex binding | (GO:0001154) | molecular_function | Interacting selectively and non-covalently with a general RNA polymerase III transcription factor belonging to the TFIIB complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase III. |
| TFIIIA-class transcription factor binding | (GO:0001155) | molecular_function | Interacting selectively and non-covalently with an RNA polymerase III transcription factor of the TFIIIA class, one of the factors involved in formation of the preinitiation complex (PIC) at RNA polymerase III promoters. |
| TFIIIC-class transcription factor complex binding | (GO:0001156) | molecular_function | Interacting selectively and non-covalently with a general RNA polymerase III transcription factor belonging to the TFIIC complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase III. |
| enhancer sequence-specific DNA binding | (GO:0001158) | molecular_function | Interacting selectively and non-covalently with a specific sequence of DNA that is part of an enhancer, a transcription regulatory region that is somewhat distal from the core promoter and which enhances transcription from that promoter. |
| transcription termination site DNA binding | (GO:0001160) | molecular_function | Interacting selectively and non-covalently with a region of DNA that promotes termination by RNA polymerase. The transcribed region might be described as a gene, cistron, or operon. |
| intronic transcription regulatory region sequence-specific DNA binding | (GO:0001161) | molecular_function | Interacting selectively and non-covalently with an intronic DNA sequence that regulates the transcription of the transcript it is contained within. |
| RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding | (GO:0001162) | molecular_function | Interacting selectively and non-covalently with an RNA polymerase II intronic DNA sequence that regulates the transcription of the transcript it is contained within. |
| RNA polymerase I regulatory region sequence-specific DNA binding | (GO:0001163) | molecular_function | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase I. |
| RNA polymerase I CORE element sequence-specific DNA binding | (GO:0001164) | molecular_function | Interacting selectively and non-covalently with the regulatory region composed of the transcription start site and binding sites for transcription factors of the RNA polymerase I transcription machinery. This site is often referred to as the CORE element. In mammalian cells, the CORE element functions in conjunction with the Upstream Control Element (UCE), while in fungi, protozoa, and plants, the CORE element functions without a UCE. |
| RNA polymerase I upstream control element sequence-specific DNA binding | (GO:0001165) | molecular_function | Interacting selectively and non-covalently with the upstream control element (UCE, or alternately referred to as the upstream element), a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase I. |
| RNA polymerase I enhancer sequence-specific DNA binding | (GO:0001166) | molecular_function | Interacting selectively and non-covalently with a RNA polymerase I (Pol I) enhancer. In mammalian cells, enhancers are distal sequences that increase the utilization of promoters, and can function in either orientation and in any location (upstream or downstream) relative to the core promoter. |
| obsolete RNA polymerase I transcription factor activity, sequence-specific DNA binding | (GO:0001167) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase I. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. See https://github.com/geneontology/go-ontology/issues/15787. |
| obsolete transcription factor activity, RNA polymerase I upstream control element sequence-specific binding | (GO:0001168) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with the upstream control element (UCE, or alternately referred to as the upstream element, UE), a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase I in order to modulate transcription by RNA polymerase I. This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. See https://github.com/geneontology/go-ontology/issues/15787. |
| obsolete transcription factor activity, RNA polymerase I CORE element sequence-specific binding | (GO:0001169) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with CORE element, a regulatory region composed of the transcription start site and binding sites for transcription factors of the RNA polymerase I transcription machinery in order to modulate transcription by RNA polymerase I. This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. See https://github.com/geneontology/go-ontology/issues/15787. |
| obsolete transcription factor activity, RNA polymerase I enhancer sequence-specific binding | (GO:0001170) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with a RNA polymerase I (Pol I) enhancer in order to modulate transcription by RNA polymerase I. This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child. See https://github.com/geneontology/go-ontology/issues/15787. |
| RNA polymerase I transcription factor binding | (GO:0001179) | molecular_function | Interacting selectively and non-covalently with an RNA polymerase I transcription factor, any protein required to initiate or regulate transcription by RNA polymerase I. |
| obsolete transcriptional activator activity, RNA polymerase II transcription factor binding | (GO:0001190) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with an RNA polymerase II transcription factor, which may be a single protein or a complex, in order to increase the frequency, rate or extent of transcription from an RNA polymerase II promoter. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent. For more details see https://github.com/geneontology/go-ontology/issues/16053 |
| obsolete transcriptional repressor activity, RNA polymerase II transcription factor binding | (GO:0001191) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with an RNA polymerase II transcription factor, which may be a single protein or a complex, in order to stop, prevent, or reduce the frequency, rate or extent of transcription from an RNA polymerase II promoter. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent. For more details see https://github.com/geneontology/go-ontology/issues/16053 |
| transcription factor activity, metal ion regulated sequence-specific DNA binding | (GO:0001199) | molecular_function | Interacting selectively and non-covalently with a specific DNA sequence and interacting selectively and non-covalently with any metal ion(s) and responding, e.g. by conformational change, to changes in the cellular level of those metal ions, in such a way that metal ion binding regulates the activity of the transcription factor in order to modulate transcription by an RNA polymerase. Specific mechanisms include increasing or decreasing the ability of the transcription factor to interact selectively and non-covalently with a specific DNA sequence (for example S. cerevisiae Cup2p or the prokaryotic SmtB/ArsR family, changing the conformation of transcription factor bound DNA between the apo- and metal-bound forms of the transcription factor. Additional mechanisms may exist. |
| RNA polymerase II transcription factor activity, metal ion regulated sequence-specific DNA binding | (GO:0001200) | molecular_function | Interacting selectively and non-covalently with a specific DNA sequence and interacting selectively and non-covalently with any metal ion(s) and responding, e.g. by conformational change, to changes in the cellular level of those metal ions, in such a way that metal ion binding regulates the activity of the transcription factor in order to modulate transcription by RNA polymerase II. Specific mechanisms include increasing or decreasing the ability of the transcription factor to interact selectively and non-covalently with a specific DNA sequence (for example S. cerevisiae Cup2p or the prokaryotic SmtB/ArsR family, changing the conformation of transcription factor bound DNA between the apo- and metal-bound forms of the transcription factor. Additional mechanisms may exist. |
| RNA polymerase II transcription factor activity, metal ion regulated proximal promoter sequence-specific DNA binding | (GO:0001201) | molecular_function | Interacting selectively and non-covalently with a specific DNA sequence that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) and interacting selectively and non-covalently with any metal ion(s) and responding, e.g. by conformational change, to changes in the cellular level of those metal ions, in such a way that metal ion binding regulates the activity of the transcription factor that binds the core promoter proximal region in order to modulate transcription by RNA polymerase II. Specific mechanisms include increasing or decreasing the ability of the transcription factor to interact selectively and non-covalently with a specific DNA sequence (for example S. cerevisiae Cup2p or the prokaryotic SmtB/ArsR family, changing the conformation of transcription factor bound DNA between the apo- and metal-bound forms of the transcription factor. Additional mechanisms may exist. |
| RNA polymerase II transcription factor activity, copper ion regulated proximal promoter sequence-specific DNA binding | (GO:0001202) | molecular_function | Interacting selectively and non-covalently with a specific DNA sequence that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) and interacting selectively and non-covalently with copper(I) (Cu+) ion(s) and responding, e.g. by conformational change, to changes in the cellular level of copper(I) (Cu+), such a way that copper ion binding regulates the activity of the transcription factor, perhaps by regulating the ability to interact selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II), or by regulating some other function of the transcription factor, in order to modulate transcription by RNAP II. |
| RNA polymerase II transcription factor activity, zinc ion regulated proximal promoter sequence-specific DNA binding | (GO:0001203) | molecular_function | Interacting selectively and non-covalently with a specific DNA sequence that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) and interacting selectively and non-covalently with zinc (Zn) ion(s) and responding, e.g. by conformational change, to changes in the cellular level of zinc (Zn), in such a way that zinc ion binding regulates the activity of the transcription factor, perhaps by regulating the ability to interact selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II), or by regulating some other function of the transcription factor, in order to modulate transcription by RNAP II. |
| bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding | (GO:0001204) | molecular_function | Interacting selectively and non-covalently with a specific bacterial-type transcription regulatory DNA sequence and interacting selectively and non-covalently with any metal ion(s) and responding, e.g. by conformational change, to changes in the cellular level of those metal ions, in such a way that metal ion binding regulates the activity of the transcription factor in order to modulate transcription by a bacterial-type RNA polymerase. Specific mechanisms include increasing or decreasing the ability of the transcription factor to interact selectively and non-covalently with a specific DNA sequence (for example S. cerevisiae Cup2p or the prokaryotic SmtB/ArsR family, changing the conformation of transcription factor bound DNA between the apo- and metal-bound forms of the transcription factor. Additional mechanisms may exist. |
| transcriptional activator activity, metal ion regulated sequence-specific DNA binding | (GO:0001209) | molecular_function | Interacting selectively and non-covalently with a specific DNA sequence and interacting selectively and non-covalently with any metal ion(s) and responding, e.g. by conformational change, to changes in the cellular level of those metal ions, in such a way that metal ion binding regulates the activity of the transcription factor in order to activate or increase the frequency, rate or extent of cellular DNA-dependent transcription by an RNA polymerase. Specific mechanisms include increasing or decreasing the ability of the transcription factor to interact selectively and non-covalently with a specific DNA sequence (for example S. cerevisiae Cup2p or the prokaryotic SmtB/ArsR family, changing the conformation of transcription factor bound DNA between the apo- and metal-bound forms of the transcription factor. Additional mechanisms may exist. |
| transcriptional repressor activity, metal ion regulated sequence-specific DNA binding | (GO:0001210) | molecular_function | Interacting selectively and non-covalently with a specific DNA sequence and interacting selectively and non-covalently with any metal ion(s) and responding, e.g. by conformational change, to changes in the cellular level of those metal ions, in such a way that metal ion binding regulates the activity of the transcription factor in order to stop, prevent, or reduce the frequency, rate or extent of cellular DNA-dependent transcription by an RNA polymerase. Specific mechanisms include increasing or decreasing the ability of the transcription factor to interact selectively and non-covalently with a specific DNA sequence (for example S. cerevisiae Cup2p or the prokaryotic SmtB/ArsR family, changing the conformation of transcription factor bound DNA between the apo- and metal-bound forms of the transcription factor. Additional mechanisms may exist. |
| RNA polymerase II transcriptional activator activity, copper ion regulated proximal promoter sequence-specific DNA binding | (GO:0001211) | molecular_function | Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) and interacting selectively and non-covalently with copper(I) (Cu+) ion(s) and responding, e.g. by conformational change, to changes in the cellular level of copper(I) (Cu+), such a way that copper ion binding regulates the activity of the transcription factor in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter. |
| RNA polymerase II transcriptional activator activity, zinc ion regulated proximal promoter sequence-specific DNA binding | (GO:0001212) | molecular_function | Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) and interacting selectively and non-covalently with zinc (Zn) ion(s) and responding, e.g. by conformational change, to changes in the cellular level of zinc (Zn), such a way that copper ion binding regulates the activity of the transcription factor in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter. |
| RNA polymerase II transcriptional activator activity, metal ion regulated proximal promoter sequence-specific DNA binding | (GO:0001213) | molecular_function | Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) and interacting selectively and non-covalently with metal ion(s) and responding, e.g. by conformational change, to changes in the cellular level of metal ion, such a way that metal ion binding regulates the activity of the transcription factor in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter. |
| RNA polymerase II transcriptional repressor activity, metal ion regulated proximal promoter sequence-specific DNA binding | (GO:0001214) | molecular_function | Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) and interacting selectively and non-covalently with metal ion(s) and responding, e.g. by conformational change, to changes in the cellular level of metal ion, such a way that metal ion binding regulates the activity of the transcription factor in order to stop, prevent, or reduce the frequency, rate or extent of transcription from an RNA polymerase II promoter. |
| bacterial-type RNA polymerase transcriptional activator activity, metal ion regulated sequence-specific DNA binding | (GO:0001215) | molecular_function | Interacting selectively and non-covalently with a specific bacterial-type transcription regulatory DNA sequence and interacting selectively and non-covalently with any metal ion(s) and responding, e.g. by conformational change, to changes in the cellular level of those metal ions, in such a way that metal ion binding regulates the activity of the transcription factor in order to activate or increase the frequency, rate or extent of cellular DNA-dependent transcription by a bacterial-type RNA polymerase. Specific mechanisms include increasing or decreasing the ability of the transcription factor to interact selectively and non-covalently with a specific DNA sequence (for example S. cerevisiae Cup2p or the prokaryotic SmtB/ArsR family, changing the conformation of transcription factor bound DNA between the apo- and metal-bound forms of the transcription factor. Additional mechanisms may exist. |
| bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding | (GO:0001216) | molecular_function | Interacting selectively and non-covalently with a specific DNA sequence in order to activate or increase the frequency, rate or extent of transcription by bacterial-type RNA polymerase. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. |
| bacterial-type RNA polymerase transcriptional repressor activity, sequence-specific DNA binding | (GO:0001217) | molecular_function | Interacting selectively and non-covalently with a specific DNA sequence in order to stop, prevent, or reduce the frequency, rate or extent of transcription by bacterial-type RNA polymerase. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. |
| bacterial-type RNA polymerase transcriptional repressor activity, metal ion regulated sequence-specific DNA binding | (GO:0001218) | molecular_function | Interacting selectively and non-covalently with a specific bacterial-type transcription regulatory DNA sequence and interacting selectively and non-covalently with any metal ion(s) and responding, e.g. by conformational change, to changes in the cellular level of those metal ions, in such a way that metal ion binding regulates the activity of the transcription factor in order to stop, prevent, or reduce the frequency, rate or extent of cellular DNA-dependent transcription by a bacterial-type RNA polymerase. Specific mechanisms include increasing or decreasing the ability of the transcription factor to interact selectively and non-covalently with a specific DNA sequence (for example S. cerevisiae Cup2p or the prokaryotic SmtB/ArsR family, changing the conformation of transcription factor bound DNA between the apo- and metal-bound forms of the transcription factor. Additional mechanisms may exist. |
| bacterial-type RNA polymerase transcriptional repressor activity, copper ion regulated sequence-specific DNA binding | (GO:0001219) | molecular_function | Interacting selectively and non-covalently with a specific bacterial-type transcription regulatory DNA sequence and interacting selectively and non-covalently with copper(I) (Cu+) ion(s) and responding, e.g. by conformational change, to changes in the cellular level of copper(I) (Cu+), in such a way that copper ion binding regulates the activity of the transcription factor in order to stop, prevent, or reduce the frequency, rate or extent of cellular DNA-dependent transcription by a bacterial-type RNA polymerase. |
| bacterial-type RNA polymerase transcriptional repressor activity, cadmium ion regulated sequence-specific DNA binding | (GO:0001220) | molecular_function | Interacting selectively and non-covalently with a specific bacterial-type transcription regulatory DNA sequence and interacting selectively and non-covalently with cadmium (Cd) ion(s) and responding, e.g. by conformational change, to changes in the cellular level of cadmium (Cd), in such a way that cadmium (Cd) ion binding regulates the activity of the transcription factor in order to stop, prevent, or reduce the frequency, rate or extent of cellular DNA-dependent transcription by a bacterial-type RNA polymerase. |
| transcription cofactor binding | (GO:0001221) | molecular_function | Interacting selectively and non-covalently with a transcription cofactor, any protein involved in regulation of transcription via protein-protein interactions with transcription factors and other transcription regulatory proteins. Cofactors do not bind DNA directly, but rather mediate protein-protein interactions between regulatory transcription factors and the basal transcription machinery. |
| transcription corepressor binding | (GO:0001222) | molecular_function | Interacting selectively and non-covalently with a transcription corepressor, any protein involved in negative regulation of transcription via protein-protein interactions with transcription factors and other proteins that negatively regulate transcription. Transcription corepressors do not bind DNA directly, but rather mediate protein-protein interactions between repressing transcription factors and the basal transcription machinery. |
| transcription coactivator binding | (GO:0001223) | molecular_function | Interacting selectively and non-covalently with a transcription coactivator, any protein involved in positive regulation of transcription via protein-protein interactions with transcription factors and other proteins that positively regulate transcription. Transcription coactivators do not bind DNA directly, but rather mediate protein-protein interactions between activating transcription factors and the basal transcription machinery. |
| RNA polymerase II transcription cofactor binding | (GO:0001224) | molecular_function | Interacting selectively and non-covalently with a transcription cofactor for RNA polymerase II, any protein involved in regulation of transcription via protein-protein interactions with RNA polymerase II transcription factors and other transcription regulatory proteins. Cofactors do not bind DNA directly, but rather mediate protein-protein interactions between regulatory transcription factors and the basal transcription machinery of RNA polymerase II. |
| RNA polymerase II transcription coactivator binding | (GO:0001225) | molecular_function | Interacting selectively and non-covalently with an RNA polymerase II transcription coactivator, any protein involved in positive regulation of transcription of RNA polymerase II via protein-protein interactions with transcription factors and other proteins that positively regulate transcription. Transcription coactivators do not bind DNA directly, but rather mediate protein-protein interactions between activating transcription factors and the basal transcription machinery of RNA polymerase II. |
| RNA polymerase II transcription corepressor binding | (GO:0001226) | molecular_function | Interacting selectively and non-covalently with an RNA polymerase II transcription corepressor, any protein involved in negative regulation of transcription by RNA polymerase II via protein-protein interactions with transcription factors and other proteins that negatively regulate transcription. Transcription corepressors do not bind DNA directly, but rather mediate protein-protein interactions between repressing transcription factors and the basal transcription machinery of RNA polymerase II. |
| calcium ion binding | (GO:0005509) | molecular_function | Interacting selectively and non-covalently with calcium ions (Ca2+). |
| lipopolysaccharide binding | (GO:0001530) | molecular_function | Interacting selectively and non-covalently with lipopolysaccharide. |
| interleukin-21 receptor binding | (GO:0001531) | molecular_function | Interacting selectively and non-covalently with the interleukin-21 receptor. |
| amyloid-beta binding | (GO:0001540) | molecular_function | Interacting selectively and non-covalently with amyloid-beta peptide/protein and/or its precursor. |
| galactoside binding | (GO:0016936) | molecular_function | Interacting selectively and non-covalently with any glycoside in which the sugar group is galactose. |
| apelin receptor binding | (GO:0031704) | molecular_function | Interacting selectively and non-covalently with an apelin receptor. |
| G protein-coupled receptor binding | (GO:0001664) | molecular_function | Interacting selectively and non-covalently with a G protein-coupled receptor. |
| pseudophosphatase activity | (GO:0001691) | molecular_function | Maintains the phosphorylation state of certain molecules by associating with them and preventing them from associating with active phosphatases, and thus inhibiting the enzyme activity without interacting with the enzyme. Often pertains to proteins belonging to dual-specificity phosphatase family but lacking critical active site residues. |
| phosphotyrosine residue binding | (GO:0001784) | molecular_function | Interacting selectively and non-covalently with a phosphorylated tyrosine residue within a protein. |
| phosphatidylserine binding | (GO:0001786) | molecular_function | Interacting selectively and non-covalently with phosphatidylserine, a class of glycophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of L-serine. |
| polymeric immunoglobulin binding | (GO:0001790) | molecular_function | Interacting selectively and non-covalently with a J-chain-containing polymeric immunoglobulin of the IgA or IgM isotypes. |
| IgM binding | (GO:0001791) | molecular_function | Interacting selectively and non-covalently with an immunoglobulin of the IgM isotype. |
| opsonin binding | (GO:0001846) | molecular_function | Interacting selectively and non-covalently with an opsonin, such as a complement component or antibody, deposited on the surface of a bacteria, virus, immune complex, or other particulate material. |
| complement binding | (GO:0001848) | molecular_function | Interacting selectively and non-covalently with any component or product of the complement cascade. |
| complement component C1q binding | (GO:0001849) | molecular_function | Interacting selectively and non-covalently with the C1q component of the classical complement cascade. |
| complement component C3a binding | (GO:0001850) | molecular_function | Interacting selectively and non-covalently with the C3a product of the complement cascade. |
| complement component C3b binding | (GO:0001851) | molecular_function | Interacting selectively and non-covalently with the C3b product of the complement cascade. |
| complement component iC3b binding | (GO:0001852) | molecular_function | Interacting selectively and non-covalently with the iC3b product of the complement cascade. |
| complement component C3dg binding | (GO:0001853) | molecular_function | Interacting selectively and non-covalently with the C3dg product of the complement cascade. |
| complement component C3d binding | (GO:0001854) | molecular_function | Interacting selectively and non-covalently with the C3d product of the complement cascade. |
| complement component C4b binding | (GO:0001855) | molecular_function | Interacting selectively and non-covalently with the C4b product of the classical complement cascade. |
| complement component C5a binding | (GO:0001856) | molecular_function | Interacting selectively and non-covalently with the C5a product of the complement cascade. |
| collectin binding | (GO:0001862) | molecular_function | Interacting selectively and non-covalently with a collectin, a member of a group of structurally related pattern recognition molecules characterized by having a carbohydrate recognition domain of the C-type lectin family at the C-terminus and a collagenous domain at the N-terminus. |
| pentraxin binding | (GO:0001864) | molecular_function | Interacting selectively and non-covalently with a pentraxin, a member of a family of inflammatory proteins with a radially symmetric arrangement of five identical, noncovalently linked chains in a pentagonal array. |
| pattern binding | (GO:0001871) | molecular_function | Interacting selectively and non-covalently with a repeating or polymeric structure, such as a polysaccharide or peptidoglycan. |
| (1->3)-beta-D-glucan binding | (GO:0001872) | molecular_function | Interacting selectively and non-covalently with (1->3)-beta-D-glucans. |
| lipoarabinomannan binding | (GO:0001876) | molecular_function | Interacting selectively and non-covalently with lipoarabinomannan. |
| nucleoside binding | (GO:0001882) | molecular_function | Interacting selectively and non-covalently with a nucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked either to ribose or deoxyribose. |
| purine nucleoside binding | (GO:0001883) | molecular_function | Interacting selectively and non-covalently with a purine nucleoside, a compound consisting of a purine base linked either to ribose or deoxyribose. |
| pyrimidine nucleoside binding | (GO:0001884) | molecular_function | Interacting selectively and non-covalently with a pyrimidine nucleoside, a compound consisting of a pyrimidine base linked either to ribose or deoxyribose. |
| phagocytic cup | (GO:0001891) | cellular_component | An invagination of the cell membrane formed by an actin dependent process during phagocytosis. Following internalization it is converted into a phagosome. |
| farnesylated protein binding | (GO:0001918) | molecular_function | Interacting selectively and non-covalently with a farnesylated protein. |
| G-protein alpha-subunit binding | (GO:0001965) | molecular_function | Interacting selectively and non-covalently with a G-protein alpha subunit. The alpha subunit binds a guanine nucleotide. |
| fibronectin binding | (GO:0001968) | molecular_function | Interacting selectively and non-covalently with a fibronectin, a group of related adhesive glycoproteins of high molecular weight found on the surface of animal cells, connective tissue matrices, and in extracellular fluids. |
| retinoic acid binding | (GO:0001972) | molecular_function | Interacting selectively and non-covalently with retinoic acid, 3,7-dimethyl-9-(2,6,-trimethyl-1-cyclohexen-1-yl)-2,4,6,8-nonatetraenoic acid. |
| protease binding | (GO:0002020) | molecular_function | Interacting selectively and non-covalently with any protease or peptidase. |
| p53 binding | (GO:0002039) | molecular_function | Interacting selectively and non-covalently with one of the p53 family of proteins. |
| opsin binding | (GO:0002046) | molecular_function | Interacting selectively and non-covalently with an opsin, any of a group of hydrophobic, integral membrane glycoproteins located primarily in the disc membrane of rods or cones, involved in photoreception. |
| nucleobase binding | (GO:0002054) | molecular_function | Interacting selectively and non-covalently with a nucleobase, any of a class of pyrmidines or purines, organic nitrogenous bases. |
| adenine binding | (GO:0002055) | molecular_function | Interacting selectively and non-covalently with adenine, a purine base. |
| cytosine binding | (GO:0002056) | molecular_function | Interacting selectively and non-covalently with cytosine. |
| guanine binding | (GO:0002057) | molecular_function | Interacting selectively and non-covalently with guanine. |
| uracil binding | (GO:0002058) | molecular_function | Interacting selectively and non-covalently with uracil. |
| thymine binding | (GO:0002059) | molecular_function | Interacting selectively and non-covalently with thymine. |
| purine nucleobase binding | (GO:0002060) | molecular_function | Interacting selectively and non-covalently with a purine nucleobase, an organic nitrogenous base with a purine skeleton. |
| pyrimidine nucleobase binding | (GO:0002061) | molecular_function | Interacting selectively and non-covalently with a pyrimidine nucleobase, an organic nitrogenous base with a pyrimidine skeleton. |
| diaphragm contraction | (GO:0002086) | biological_process | A process in which force is generated within involuntary skeletal muscle tissue, resulting in a change in muscle geometry. This process occurs in the diaphragm. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The diaphragm is a striated muscle that is necessary for the process of respiratory gaseous exchange. |
| podosome | (GO:0002102) | cellular_component | An actin-rich adhesion structure characterized by formation upon cell substrate contact and localization at the substrate-attached part of the cell, contain an F-actin-rich core surrounded by a ring structure containing proteins such as vinculin and talin, and have a diameter of 0.5 mm. |
| interleukin-33 receptor binding | (GO:0002112) | molecular_function | Interacting selectively and non-covalently with the interleukin-33 receptor. |
| interleukin-33 binding | (GO:0002113) | molecular_function | Interacting selectively and non-covalently with interleukin-33. |
| UTP binding | (GO:0002134) | molecular_function | Interacting selectively and non-covalently with UTP, uridine 5'-triphosphate. |
| CTP binding | (GO:0002135) | molecular_function | Interacting selectively and non-covalently with CTP, cytidine 5'-triphosphate. |
| G-quadruplex RNA binding | (GO:0002151) | molecular_function | Interacting selectively and non-covalently with G-quadruplex RNA structures, in which groups of four guanines adopt a flat, cyclic hydrogen-bonding arrangement known as a guanine tetrad. |
| steroid receptor RNA activator RNA binding | (GO:0002153) | molecular_function | Interacting selectively and non-covalently with the steroid receptor RNA activator RNA (SRA). SRA enhances steroid hormone receptor transcriptional activity as an RNA transcript by an indirect mechanism that does not involve SRA-steroid receptor binding. |
| dystroglycan binding | (GO:0002162) | molecular_function | Interacting selectively and non-covalently with dystroglycan. Dystroglycan is glycoprotein found in non-muscle tissues as well as in muscle tissues, often in association with dystrophin. The native dystroglycan cleaved into two non-covalently associated subunits, alpha (N-terminal) and beta (C-terminal). |
| manchette | (GO:0002177) | cellular_component | A tubular array of microtubules that extends from the perinuclear ring surrounding the spermatid nucleus to the flagellar axoneme. The manchette may also contain F-actin filaments. |
| immune system development | (GO:0002520) | biological_process | The process whose specific outcome is the progression of an organismal system whose objective is to provide calibrated responses by an organism to a potential internal or invasive threat, over time, from its formation to the mature structure. A system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a given biological process. |
| heart morphogenesis | (GO:0003007) | biological_process | The developmental process in which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood. |
| system process | (GO:0003008) | biological_process | A multicellular organismal process carried out by any of the organs or tissues in an organ system. An organ system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a biological objective. |
| skeletal muscle contraction | (GO:0003009) | biological_process | A process in which force is generated within skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. In the skeletal muscle, the muscle contraction takes advantage of an ordered sarcomeric structure and in most cases it is under voluntary control. |
| voluntary skeletal muscle contraction | (GO:0003010) | biological_process | A process in which force is generated within voluntary skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. In the voluntary skeletal muscle, the muscle contraction takes advantage of an ordered sarcomeric structure and it is under voluntary control. Voluntary skeletal muscle is skeletal muscle that is under conscious control. |
| involuntary skeletal muscle contraction | (GO:0003011) | biological_process | A process in which force is generated within involuntary skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Involuntary skeletal muscle is skeletal muscle that is not under conscious control. |
| heart process | (GO:0003015) | biological_process | A circulatory system process carried out by the heart. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood. |
| apical constriction | (GO:0003383) | biological_process | The actin-mediated process that results in the contraction of the apical end of a polarized columnar epithelial cell. |
| apical constriction involved in gastrulation | (GO:0003384) | biological_process | The actin-mediated process that results in the contraction of the apical end of a polarized columnar epithelial cell, contributing to the process of gastrulation. |
| cytoneme morphogenesis | (GO:0003399) | biological_process | The process in which the anatomical structures of a cytoneme are shaped. A cytoneme is a long, thin and polarized actin-based cytoplasmic extension that projects from a cell. |
| nucleic acid binding | (GO:0003676) | molecular_function | Interacting selectively and non-covalently with any nucleic acid. |
| AT DNA binding | (GO:0003680) | molecular_function | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
| bent DNA binding | (GO:0003681) | molecular_function | Interacting selectively and non-covalently with DNA in a bent conformation. |
| chromatin binding | (GO:0003682) | molecular_function | Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. |
| lamin binding | (GO:0005521) | molecular_function | Interacting selectively and non-covalently with lamin; any of a group of intermediate-filament proteins that form the fibrous matrix on the inner surface of the nuclear envelope. |
| damaged DNA binding | (GO:0003684) | molecular_function | Interacting selectively and non-covalently with damaged DNA. |
| DNA replication origin binding | (GO:0003688) | molecular_function | Interacting selectively and non-covalently with the DNA replication origin, a unique DNA sequence of a replicon at which DNA replication is initiated and proceeds bidirectionally or unidirectionally. |
| double-stranded DNA binding | (GO:0003690) | molecular_function | Interacting selectively and non-covalently with double-stranded DNA. |
| double-stranded telomeric DNA binding | (GO:0003691) | molecular_function | Interacting selectively and non-covalently with double-stranded telomere-associated DNA. |
| left-handed Z-DNA binding | (GO:0003692) | molecular_function | Interacting selectively and non-covalently with DNA in the Z form, i.e. a left-handed helix in which the phosphate backbone zigzags. |
| P-element binding | (GO:0003693) | molecular_function | Interacting selectively and non-covalently with any P-element, a class of Drosophila transposon responsible for hybrid dysgenesis. |
| obsolete plasmid binding | (GO:0003694) | molecular_function | OBSOLETE. Interacting selectively with a plasmid, an extrachromosomal genetic element usually characterized as a covalently continuous double stranded DNA molecule found in bacteria and some other microorganisms. This term was made obsolete because it refers to component information. |
| random coil DNA binding | (GO:0003695) | molecular_function | Interacting selectively and non-covalently with DNA in a random coil configuration. |
| satellite DNA binding | (GO:0003696) | molecular_function | Interacting selectively and non-covalently with satellite DNA, the many tandem repeats (identical or related) of a short basic repeating unit; many have a base composition or other property different from the genome average that allows them to be separated from the bulk (main band) genomic DNA. |
| single-stranded DNA binding | (GO:0003697) | molecular_function | Interacting selectively and non-covalently with single-stranded DNA. |
| obsolete RNA polymerase I transcription factor activity | (GO:0003701) | molecular_function | OBSOLETE. Functions to initiate or regulate RNA polymerase I transcription. This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. |
| obsolete RNA polymerase II transcription factor activity | (GO:0003702) | molecular_function | OBSOLETE. Functions to initiate or regulate RNA polymerase II transcription. This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. |
| obsolete specific RNA polymerase II transcription factor activity | (GO:0003704) | molecular_function | OBSOLETE. Functions to enable the transcription of specific, or specific sets, of genes by RNA polymerase II. This term was obsoleted because "general/nonspecific/basal" transcription vs "specific" transcription were determined not to be separable, distinct process. Thus, terms trying to distinguish "general/nonspecific/basal" transcription from "specific" transcription were removed from both the Molecular Function and the Biological Process ontologies. In addition, this Molecular Function term was defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. |
| transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding | (GO:0003705) | molecular_function | Interacting selectively and non-covalently with a sequence of DNA that is in a distal enhancer region for RNA polymerase II (RNAP II) in order to modulate transcription by RNAP II. |
| obsolete ligand-regulated transcription factor activity | (GO:0003706) | molecular_function | OBSOLETE. Functions to enable the transcription of specific, or specific sets, of genes by RNA polymerase II in response to a ligand. This term was made obsolete because it does not convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. |
| nuclear receptor activity | (GO:0004879) | molecular_function | Combining with a signal and transmitting the signal to the transcriptional machinery by interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. |
| retinoic acid receptor activity | (GO:0003708) | molecular_function | Combining with retinoic acid and transmitting the signal to the transcriptional machinery by interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. Retinoic acid is one of the forms of vitamin A. |
| obsolete RNA polymerase III transcription factor activity | (GO:0003709) | molecular_function | OBSOLETE. Functions to initiate or regulate RNA polymerase III transcription. This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. |
| obsolete transcription termination factor activity | (GO:0003715) | molecular_function | OBSOLETE. Any activity that brings about termination of transcription. This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. |
| obsolete RNA polymerase I transcription termination factor activity | (GO:0003716) | molecular_function | OBSOLETE. Any activity that brings about termination of transcription by RNA polymerase I. This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. |
| obsolete RNA polymerase II transcription termination factor activity | (GO:0003717) | molecular_function | OBSOLETE. Any activity that brings about termination of transcription by RNA polymerase II. This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. |
| obsolete RNA polymerase III transcription termination factor activity | (GO:0003718) | molecular_function | OBSOLETE. Any activity that brings about termination of transcription by RNA polymerase III. This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. |
| RNA binding | (GO:0003723) | molecular_function | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
| double-stranded RNA binding | (GO:0003725) | molecular_function | Interacting selectively and non-covalently with double-stranded RNA. |
| single-stranded RNA binding | (GO:0003727) | molecular_function | Interacting selectively and non-covalently with single-stranded RNA. |
| mRNA binding | (GO:0003729) | molecular_function | Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. |
| mRNA 3'-UTR binding | (GO:0003730) | molecular_function | Interacting selectively and non-covalently with the 3' untranslated region of an mRNA molecule. |
| obsolete mRNA cap binding | (GO:0003731) | molecular_function | OBSOLETE. Interacting selectively with the 7-methylguanosine cap at the 5' end of a nascent messenger RNA transcript. This term was made obsolete because the functional distinction for cap binding is the structure of the cap, not the type of RNA it is attached to. |
| obsolete snRNA cap binding | (GO:0003732) | molecular_function | OBSOLETE. Interacting selectively with the cap structure at the 5' end of a small nuclear RNA molecule. This term was made obsolete because the functional distinction for cap binding is the structure of the cap, not the type of RNA it is attached to. |
| histone binding | (GO:0042393) | molecular_function | Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. |
| chaperone binding | (GO:0051087) | molecular_function | Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport. |
| muscle contraction | (GO:0006936) | biological_process | A process in which force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. |
| contractile fiber | (GO:0043292) | cellular_component | Fibers, composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle. |
| antigen binding | (GO:0003823) | molecular_function | Interacting selectively and non-covalently with an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen. |
| obsolete proliferating cell nuclear antigen | (GO:0003892) | molecular_function | OBSOLETE. A nuclear protein that associates as a trimer and then interacts with delta DNA polymerase and epsilon DNA polymerase, acting as an auxiliary factor for DNA replication and DNA repair. This term was made obsolete because describing something as an 'antigen' means that an organism can produce antibodies to it, which says nothing about the gene product activity. |
| obsolete Rho small monomeric GTPase activity | (GO:0003931) | molecular_function | OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate. Any member of the Rho subfamily of the RAS superfamily of monomeric GTPases. Proteins in the Rho subfamily are involved in relaying signals from cell-surface receptors to the actin cytoskeleton. This term was made obsolete because it represents a gene product. |
| obsolete cathepsin H activity | (GO:0004215) | molecular_function | OBSOLETE. Catalysis of the hydrolysis of peptide bonds, acting as an aminopeptidase (notably, cleaving Arg-Xaa bonds) as well as an endopeptidase. This term was made obsolete because it represents a gene product. |
| signaling receptor binding | (GO:0005102) | molecular_function | Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. |
| cell adhesion molecule binding | (GO:0050839) | molecular_function | Interacting selectively and non-covalently with a cell adhesion molecule. |
| cyclosporin A binding | (GO:0016018) | molecular_function | Interacting selectively and non-covalently with cyclosporin A, a cyclic undecapeptide that contains several N-methylated and unusual amino acids. |
| juvenile hormone receptor activity | (GO:0004880) | molecular_function | Combining with juvenile hormone and transmitting the signal to the transcriptional machinery by interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. |
| androgen receptor activity | (GO:0004882) | molecular_function | Combining with an androgen and transmitting the signal to the transcriptional machinery by interacting selectively and non-covalently with an androgen response element in DNA in order to modulate transcription by RNA polymerase II. |
| ecdysteroid hormone receptor activity | (GO:0004884) | molecular_function | Combining with an ecdysteroid hormone and transmitting the signal to the transcriptional machinery by interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. |
| 9-cis retinoic acid receptor activity | (GO:0004886) | molecular_function | Combining with 9-cis retinoic acid and transmitting the signal to the transcriptional machinery by interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. |
| thyroid hormone receptor activity | (GO:0004887) | molecular_function | Combining with thyroid hormone and transmitting the signal to the transcriptional machinery by interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. |
| peptide antigen binding | (GO:0042605) | molecular_function | Interacting selectively and non-covalently with an antigen peptide. |
| ErbB-3 class receptor binding | (GO:0043125) | molecular_function | Interacting selectively and non-covalently with the protein-tyrosine kinase receptor ErbB-3/HER3. |
| signal transduction | (GO:0007165) | biological_process | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
| growth factor binding | (GO:0019838) | molecular_function | Interacting selectively and non-covalently with any growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate. |
| neurotrophin binding | (GO:0043121) | molecular_function | Interacting selectively and non-covalently with a neurotrophin, any of a family of growth factors that prevent apoptosis in neurons and promote nerve growth. |
| nerve growth factor binding | (GO:0048406) | molecular_function | Interacting selectively and non-covalently with nerve growth factor (NGF). |
| brain-derived neurotrophic factor binding | (GO:0048403) | molecular_function | Interacting selectively and non-covalently with brain-derived neurotrophic factor. |
| CD154 receptor binding | (GO:0042615) | molecular_function | Interacting selectively and non-covalently with CD154, a receptor found on the surface of some activated lymphocytes. |
| CD70 receptor binding | (GO:0042614) | molecular_function | Interacting selectively and non-covalently with a CD70, a receptor found on the surface of most activated B cells and some activated T cells. |
| KDEL sequence binding | (GO:0005046) | molecular_function | Interacting selectively and non-covalently with a KDEL sequence, the C terminus tetrapeptide sequence Lys-Asp-Glu-Leu found in proteins that are to be retained in the endoplasmic reticulum. |
| signal recognition particle binding | (GO:0005047) | molecular_function | Interacting selectively and non-covalently with the signal recognition particle. |
| signal sequence binding | (GO:0005048) | molecular_function | Interacting selectively and non-covalently with a signal sequence, a specific peptide sequence found on protein precursors or mature proteins that dictates where the mature protein is localized. |
| peroxisome matrix targeting signal-1 binding | (GO:0005052) | molecular_function | Interacting selectively and non-covalently with a type 1 peroxisome targeting signal, a tripeptide with the consensus sequence (S/A/C)-(K/R/H)-L. |
| peroxisome matrix targeting signal-2 binding | (GO:0005053) | molecular_function | Interacting selectively and non-covalently with a type 2 peroxisome targeting signal, a nonapeptide with a broad consensus sequence of (R/K)-(L/V/I)-(XXXXX)-(H/Q)-(L/A/F). |
| SH3/SH2 adaptor activity | (GO:0005070) | molecular_function | Interacting selectively and non-covalently and simultaneously with one or more signal transduction molecules, usually acting as a scaffold to bring these molecules into close proximity either using their own SH2/SH3 domains (e.g. Grb2) or those of their target molecules (e.g. SAM68). |
| mitogen-activated protein kinase binding | (GO:0051019) | molecular_function | Interacting selectively and non-covalently with a mitogen-activated protein kinase. |
| protein kinase A binding | (GO:0051018) | molecular_function | Interacting selectively and non-covalently with any subunit of protein kinase A. |
| protein kinase C binding | (GO:0005080) | molecular_function | Interacting selectively and non-covalently with protein kinase C. |
| fibroblast growth factor receptor binding | (GO:0005104) | molecular_function | Interacting selectively and non-covalently with the fibroblast growth factor receptor (FGFR). |
| type 1 fibroblast growth factor receptor binding | (GO:0005105) | molecular_function | Interacting selectively and non-covalently with the type 1 fibroblast growth factor receptor (FGFR1). |
| ephrin receptor binding | (GO:0046875) | molecular_function | Interacting selectively and non-covalently with an ephrin receptor. |
| frizzled binding | (GO:0005109) | molecular_function | Interacting selectively and non-covalently with a frizzled (fz) receptor. |
| type 2 fibroblast growth factor receptor binding | (GO:0005111) | molecular_function | Interacting selectively and non-covalently with the type 2 fibroblast growth factor receptor (FGFR2). |
| Notch binding | (GO:0005112) | molecular_function | Interacting selectively and non-covalently with the Notch (N) protein, a surface receptor. |
| patched binding | (GO:0005113) | molecular_function | Interacting selectively and non-covalently with the patched (ptc) protein, a receptor for hedgehog proteins. |
| type II transforming growth factor beta receptor binding | (GO:0005114) | molecular_function | Interacting selectively and non-covalently with a type II transforming growth factor beta receptor. |
| receptor tyrosine kinase-like orphan receptor binding | (GO:0005115) | molecular_function | Interacting selectively and non-covalently with the receptor tyrosine kinase-like orphan receptor (Ror). |
| wishful thinking binding | (GO:0005117) | molecular_function | Interacting selectively and non-covalently with wishful thinking (Wit), a type II bone morphogenic protein receptor. |
| sevenless binding | (GO:0005118) | molecular_function | Interacting selectively and non-covalently with the sevenless (sev) protein, a receptor tyrosine kinase. |
| smoothened binding | (GO:0005119) | molecular_function | Interacting selectively and non-covalently with the smoothened (smo) protein, which interacts with patched to transmit hedgehog signals. |
| Toll binding | (GO:0005121) | molecular_function | Interacting selectively and non-covalently with the Toll protein, a transmembrane receptor. |
| torso binding | (GO:0005122) | molecular_function | Interacting selectively and non-covalently with the torso (tor) protein, a receptor tyrosine kinase. |
| scavenger receptor binding | (GO:0005124) | molecular_function | Interacting selectively and non-covalently with scavenger receptors, a family of proteins that are expressed on myeloid cells and are involved in the uptake of effete cellular components and foreign particles. |
| cytokine receptor binding | (GO:0005126) | molecular_function | Interacting selectively and non-covalently with a cytokine receptor. |
| ciliary neurotrophic factor receptor binding | (GO:0005127) | molecular_function | Interacting selectively and non-covalently with the ciliary neurotrophic factor receptor. |
| erythropoietin receptor binding | (GO:0005128) | molecular_function | Interacting selectively and non-covalently with the erythropoietin receptor. |
| granulocyte macrophage colony-stimulating factor receptor binding | (GO:0005129) | molecular_function | Interacting selectively and non-covalently with the granulocyte macrophage colony-stimulating factor receptor. |
| granulocyte colony-stimulating factor receptor binding | (GO:0005130) | molecular_function | Interacting selectively and non-covalently with the granulocyte colony-stimulating factor receptor. |
| growth hormone receptor binding | (GO:0005131) | molecular_function | Interacting selectively and non-covalently with the growth hormone receptor. |
| type I interferon receptor binding | (GO:0005132) | molecular_function | Interacting selectively and non-covalently with an interferon-type I receptor, a heterodimeric complex composed of an alpha subunit (IFNAR1) and a beta subunit (IFNAR2). |
| interferon-gamma receptor binding | (GO:0005133) | molecular_function | Interacting selectively and non-covalently with the interferon-gamma receptor. |
| interleukin-2 receptor binding | (GO:0005134) | molecular_function | Interacting selectively and non-covalently with the interleukin-2 receptor. |
| interleukin-3 receptor binding | (GO:0005135) | molecular_function | Interacting selectively and non-covalently with the interleukin-3 receptor. |
| interleukin-4 receptor binding | (GO:0005136) | molecular_function | Interacting selectively and non-covalently with the interleukin-4 receptor. |
| interleukin-5 receptor binding | (GO:0005137) | molecular_function | Interacting selectively and non-covalently with the interleukin-5 receptor. |
| interleukin-6 receptor binding | (GO:0005138) | molecular_function | Interacting selectively and non-covalently with the interleukin-6 receptor. |
| interleukin-7 receptor binding | (GO:0005139) | molecular_function | Interacting selectively and non-covalently with the interleukin-7 receptor. |
| interleukin-9 receptor binding | (GO:0005140) | molecular_function | Interacting selectively and non-covalently with the interleukin-9 receptor. |
| interleukin-10 receptor binding | (GO:0005141) | molecular_function | Interacting selectively and non-covalently with the interleukin-10 receptor. |
| interleukin-11 receptor binding | (GO:0005142) | molecular_function | Interacting selectively and non-covalently with the interleukin-11 receptor. |
| interleukin-12 receptor binding | (GO:0005143) | molecular_function | Interacting selectively and non-covalently with the interleukin-12 receptor. |
| interleukin-13 receptor binding | (GO:0005144) | molecular_function | Interacting selectively and non-covalently with the interleukin-13 receptor. |
| interleukin-14 receptor binding | (GO:0005145) | molecular_function | Interacting selectively and non-covalently with the interleukin-14 receptor. |
| leukemia inhibitory factor receptor binding | (GO:0005146) | molecular_function | Interacting selectively and non-covalently with the leukemia inhibitory factor receptor. |
| oncostatin-M receptor binding | (GO:0005147) | molecular_function | Interacting selectively and non-covalently with the oncostatin-M receptor. |
| interleukin-1 receptor binding | (GO:0005149) | molecular_function | Interacting selectively and non-covalently with the interleukin-1 receptor. |
| interleukin-1, type I receptor binding | (GO:0005150) | molecular_function | Interacting selectively and non-covalently with a Type I interleukin-1 receptor. |
| interleukin-1, type II receptor binding | (GO:0005151) | molecular_function | Interacting selectively and non-covalently with a Type II interleukin-1 receptor. |
| interleukin-8 receptor binding | (GO:0005153) | molecular_function | Interacting selectively and non-covalently with the interleukin-8 receptor. |
| epidermal growth factor receptor binding | (GO:0005154) | molecular_function | Interacting selectively and non-covalently with the epidermal growth factor receptor. |
| macrophage colony-stimulating factor receptor binding | (GO:0005157) | molecular_function | Interacting selectively and non-covalently with the macrophage colony-stimulating factor receptor. |
| insulin receptor binding | (GO:0005158) | molecular_function | Interacting selectively and non-covalently with the insulin receptor. |
| insulin-like growth factor receptor binding | (GO:0005159) | molecular_function | Interacting selectively and non-covalently with the insulin-like growth factor receptor. |
| transforming growth factor beta receptor binding | (GO:0005160) | molecular_function | Interacting selectively and non-covalently with the transforming growth factor beta receptor. |
| platelet-derived growth factor receptor binding | (GO:0005161) | molecular_function | Interacting selectively and non-covalently with the platelet-derived growth factor receptor. |
| nerve growth factor receptor binding | (GO:0005163) | molecular_function | Interacting selectively and non-covalently with the nerve growth factor receptor. |
| tumor necrosis factor receptor binding | (GO:0005164) | molecular_function | Interacting selectively and non-covalently with the tumor necrosis factor receptor. |
| neurotrophin receptor binding | (GO:0005165) | molecular_function | Interacting selectively and non-covalently with a neurotrophin receptor. |
| neurotrophin p75 receptor binding | (GO:0005166) | molecular_function | Interacting selectively and non-covalently with the neurotrophin p75 receptor. |
| neurotrophin TRK receptor binding | (GO:0005167) | molecular_function | Interacting selectively and non-covalently with a neurotrophin TRK receptor. |
| neurotrophin TRKA receptor binding | (GO:0005168) | molecular_function | Interacting selectively and non-covalently with the neurotrophin TRKA receptor. |
| neurotrophin TRKB receptor binding | (GO:0005169) | molecular_function | Interacting selectively and non-covalently with the neurotrophin TRKB receptor. |
| neurotrophin TRKC receptor binding | (GO:0005170) | molecular_function | Interacting selectively and non-covalently with the neurotrophin TRKC receptor. |
| hepatocyte growth factor receptor binding | (GO:0005171) | molecular_function | Interacting selectively and non-covalently with the hepatocyte growth factor receptor. |
| vascular endothelial growth factor receptor binding | (GO:0005172) | molecular_function | Interacting selectively and non-covalently with any vascular endothelial growth factor receptor. |
| stem cell factor receptor binding | (GO:0005173) | molecular_function | Interacting selectively and non-covalently with the stem cell factor receptor (SCFR), a type III transmembrane kinase receptor. |
| CD40 receptor binding | (GO:0005174) | molecular_function | Interacting selectively and non-covalently with CD40, a receptor found on the surface of all B-lymphocytes. |
| CD27 receptor binding | (GO:0005175) | molecular_function | Interacting selectively and non-covalently with a CD27, a receptor found on the surface of T cells and some B cells and NK cells. |
| ErbB-2 class receptor binding | (GO:0005176) | molecular_function | Interacting selectively and non-covalently with the protein-tyrosine kinase receptor Neu/ErbB-2/HER2. |
| neurexin family protein binding | (GO:0042043) | molecular_function | Interacting selectively and non-covalently with neurexins, synaptic cell surface proteins related to latrotoxin receptor, laminin and agrin. Neurexins act as cell recognition molecules at nerve terminals. |
| integrin binding | (GO:0005178) | molecular_function | Interacting selectively and non-covalently with an integrin. |
| carbohydrate binding | (GO:0030246) | molecular_function | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
| vesicle targeting | (GO:0006903) | biological_process | The process in which vesicles are directed to specific destination membranes. Targeting involves coordinated interactions among cytoskeletal elements (microtubules or actin filaments), motor proteins, molecules at the vesicle membrane and target membrane surfaces, and vesicle cargo. |
| soluble NSF attachment protein activity | (GO:0005483) | molecular_function | Interacting selectively and non-covalently with both N-ethylmaleimide-sensitive fusion protein (NSF) and a cis-SNARE complex (i.e. a SNARE complex in which all proteins are associated with the same membrane) and increasing the ATPase activity of NSF, thereby allowing ATP hydrolysis by NSF to disassemble the cis-SNARE complex. |
| SNAP receptor activity | (GO:0005484) | molecular_function | Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion. |
| obsolete cytochrome P450 | (GO:0005490) | molecular_function | OBSOLETE. A cytochrome b that has a sulfur atom ligated to the iron of the prosthetic group (heme-thiolate); enzymes:typically monooxygenases acting on lipophilic substrates. This term was made obsolete because its definition was changed and because it represents a gene product. |
| steroid binding | (GO:0005496) | molecular_function | Interacting selectively and non-covalently with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene. |
| androgen binding | (GO:0005497) | molecular_function | Interacting selectively and non-covalently with any androgen, male sex hormones. |
| vitamin D binding | (GO:0005499) | molecular_function | Interacting selectively and non-covalently with vitamin D, any of a group of related, fat-soluble compounds that are derived from delta-5,7 steroids and play a central role in calcium metabolism. Specific forms of vitamin D include calciferol (ergocalciferol; vitamin D2) and cholecalciferol (calciol; vitamin D3). |
| juvenile hormone binding | (GO:0005500) | molecular_function | Interacting selectively and non-covalently with juvenile hormone, the three sesquiterpenoid derivatives that function to maintain the larval state of insects at molting and that may be required for other processes, e.g. oogenesis. |
| retinoid binding | (GO:0005501) | molecular_function | Interacting selectively and non-covalently with retinoids, any member of a class of isoprenoids that contain or are derived from four prenyl groups linked head-to-tail. Retinoids include retinol and retinal and structurally similar natural derivatives or synthetic compounds, but need not have vitamin A activity. |
| 11-cis retinal binding | (GO:0005502) | molecular_function | Interacting selectively and non-covalently with 11-cis retinal, an isomer of retinal that plays an important role in the visual process in most vertebrates. 11-cis retinal combines with opsin in the rods (scotopsin) to form rhodopsin or visual purple. Retinal is one of the three compounds that makes up vitamin A. |
| all-trans retinal binding | (GO:0005503) | molecular_function | Interacting selectively and non-covalently with all-trans retinal, a compound that plays an important role in the visual process in most vertebrates. All-trans retinal (trans r., visual yellow) results from the bleaching of rhodopsin by light, in which the 11-cis form is converted to the all-trans form. Retinal is one of the forms of vitamin A. |
| fatty acid binding | (GO:0005504) | molecular_function | Interacting selectively and non-covalently with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. |
| obsolete heavy metal binding | (GO:0005505) | molecular_function | OBSOLETE. Interacting selectively with a heavy metal, a metal that can form a coordination bond with a protein, as opposed to an alkali or alkaline-earth metal that can only form an ionic bond; this definition includes the following biologically relevant heavy metals: Cd, Co, Cu, Fe, Hg, Mn, Mo, Ni, V, W, Zn. This term was made obsolete because 'heavy metal' is an ambiguous grouping term which has no set meaning (see Pure Appl. Chem. Vol. 74, No. 5, pp. 793-807, 2002, for more information). |
| metal ion binding | (GO:0046872) | molecular_function | Interacting selectively and non-covalently with any metal ion. |
| iron ion binding | (GO:0005506) | molecular_function | Interacting selectively and non-covalently with iron (Fe) ions. |
| copper ion binding | (GO:0005507) | molecular_function | Interacting selectively and non-covalently with copper (Cu) ions. |
| cadmium ion binding | (GO:0046870) | molecular_function | Interacting selectively and non-covalently with cadmium (Cd) ions. |
| calmodulin binding | (GO:0005516) | molecular_function | Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. |
| collagen binding | (GO:0005518) | molecular_function | Interacting selectively and non-covalently with collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%). |
| cytoskeletal regulatory protein binding | (GO:0005519) | molecular_function | Interacting selectively and non-covalently with any protein involved in modulating the reorganization of the cytoskeleton. |
| insulin-like growth factor binding | (GO:0005520) | molecular_function | Interacting selectively and non-covalently with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it. |
| profilin binding | (GO:0005522) | molecular_function | Interacting selectively and non-covalently with profilin, an actin-binding protein that forms a complex with G-actin and prevents it from polymerizing to form F-actin. |
| tropomyosin binding | (GO:0005523) | molecular_function | Interacting selectively and non-covalently with tropomyosin, a protein associated with actin filaments both in cytoplasm and, in association with troponin, in the thin filament of striated muscle. |
| ATP binding | (GO:0005524) | molecular_function | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
| GTP binding | (GO:0005525) | molecular_function | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
| macrolide binding | (GO:0005527) | molecular_function | Interacting selectively and non-covalently with a macrolide, any of a large group of structurally related antibiotics produced by Streptomyces species. |
| FK506 binding | (GO:0005528) | molecular_function | Interacting selectively and non-covalently with the 23-membered macrolide lactone FK506. |
| galactose binding | (GO:0005534) | molecular_function | Interacting selectively and non-covalently with the aldohexose galactose (galacto-hexose), a common constituent of many oligo- and polysaccharides. |
| mannose binding | (GO:0005537) | molecular_function | Interacting selectively and non-covalently with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans. |
| N-acetylgalactosamine binding | (GO:0046871) | molecular_function | Interacting selectively and non-covalently with N-acetylgalactosamine, 2-acetamido-2-deoxygalactopyranose, the n-acetyl derivative of galactosamine. |
| glucose binding | (GO:0005536) | molecular_function | Interacting selectively and non-covalently with the D- or L-enantiomer of glucose. |
| glycosaminoglycan binding | (GO:0005539) | molecular_function | Interacting selectively and non-covalently with any glycan (polysaccharide) containing a substantial proportion of aminomonosaccharide residues. |
| hyaluronic acid binding | (GO:0005540) | molecular_function | Interacting selectively and non-covalently with hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine. |
| obsolete acyl-CoA or acyl binding | (GO:0005541) | molecular_function | OBSOLETE. Interacting selectively with acyl-CoA or acyl, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group, or any group formally derived by removal of a hydroxyl group from the acid function of an organic acid. This term was made obsolete because it was replaced by more appropriate terms. |
| folic acid binding | (GO:0005542) | molecular_function | Interacting selectively and non-covalently with folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines. |
| phospholipid binding | (GO:0005543) | molecular_function | Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester. |
| calcium-dependent phospholipid binding | (GO:0005544) | molecular_function | Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium. |
| 1-phosphatidylinositol binding | (GO:0005545) | molecular_function | Interacting selectively and non-covalently with phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. |
| phosphatidylinositol-4,5-bisphosphate binding | (GO:0005546) | molecular_function | Interacting selectively and non-covalently with phosphatidylinositol-4,5-bisphosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 4' and 5' positions. |
| phosphatidylinositol-3,4,5-trisphosphate binding | (GO:0005547) | molecular_function | Interacting selectively and non-covalently with phosphatidylinositol-3,4,5-trisphosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3', 4' and 5' positions. |
| odorant binding | (GO:0005549) | molecular_function | Interacting selectively and non-covalently with an odorant, any substance capable of stimulating the sense of smell. |
| pheromone binding | (GO:0005550) | molecular_function | Interacting selectively and non-covalently with a pheromone, a substance, or characteristic mixture of substances, that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process. |
| snRNA binding | (GO:0017069) | molecular_function | Interacting selectively and non-covalently with a small nuclear RNA (snRNA). |
| Ran GTPase binding | (GO:0008536) | molecular_function | Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly. |
| microtubule organizing center | (GO:0005815) | cellular_component | An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides. |
| actomyosin contractile ring | (GO:0005826) | cellular_component | A cytoskeletal structure composed of actin filaments and myosin that forms beneath the plasma membrane of many cells, including animal cells and yeast cells, in a plane perpendicular to the axis of the spindle, i.e. the cell division plane. In animal cells, the contractile ring is located at the cleavage furrow. In budding fungal cells, e.g. mitotic S. cerevisiae cells, the contractile ring forms at the mother-bud neck before mitosis. |
| troponin complex | (GO:0005861) | cellular_component | A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction. |
| muscle thin filament tropomyosin | (GO:0005862) | cellular_component | A form of the tropomyosin dimer found associated with actin and the troponin complex in muscle thin filaments. |
| striated muscle thin filament | (GO:0005865) | cellular_component | Filaments formed of actin and associated proteins; attached to Z discs at either end of sarcomeres in myofibrils. |
| Arp2/3 protein complex | (GO:0005885) | cellular_component | A stable protein complex that contains two actin-related proteins, Arp2 and Arp3, and five novel proteins (ARPC1-5), and functions in the nucleation of branched actin filaments. |
| microvillus | (GO:0005902) | cellular_component | Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells. |
| adherens junction | (GO:0005912) | cellular_component | A cell junction at which anchoring proteins (cadherins or integrins) extend through the plasma membrane and are attached to actin filaments. |
| bicellular tight junction | (GO:0005923) | cellular_component | An occluding cell-cell junction that is composed of a branching network of sealing strands that completely encircles the apical end of each cell in an epithelial sheet; the outer leaflets of the two interacting plasma membranes are seen to be tightly apposed where sealing strands are present. Each sealing strand is composed of a long row of transmembrane adhesion proteins embedded in each of the two interacting plasma membranes. |
| focal adhesion | (GO:0005925) | cellular_component | Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments. |
| cell cortex | (GO:0005938) | cellular_component | The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins. |
| chromatin insulator sequence binding | (GO:0043035) | molecular_function | Interacting selectively and non-covalently and stoichiometrically with a chromatin insulator sequence, a DNA sequence that prevents enhancer-mediated activation or repression of transcription. |
| poly(A) binding | (GO:0008143) | molecular_function | Interacting selectively and non-covalently with a sequence of adenylyl residues in an RNA molecule, such as the poly(A) tail, a sequence of adenylyl residues at the 3' end of eukaryotic mRNA. |
| glutamate decarboxylation to succinate | (GO:0006540) | biological_process | The chemical reactions and pathways resulting in the formation of succinate from glutamate. Also known as GABA (gamma-aminobutyrate) shunt since it channels glutamate into the TCA cycle bypassing two steps of that cycle. There are three enzymes involved in the GABA shunt: glutamate decarboxylase (GAD), GABA aminotransferase (GABA-TA), and succinate semialdehyde dehydrogenase (SSADH). These three enzymes acting in concert to convert glutamate into succinate. The GABA shunt is predominantly associated with neurotransmission in the mammalian brain. It is also present in nonneuronal cells, in plants, in unicellular eukaryotes, and in prokaryotes. |
| lipid binding | (GO:0008289) | molecular_function | Interacting selectively and non-covalently with a lipid. |
| smooth muscle contraction | (GO:0006939) | biological_process | A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length. |
| striated muscle contraction | (GO:0006941) | biological_process | A process in which force is generated within striated muscle tissue, resulting in the shortening of the muscle. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Striated muscle is a type of muscle in which the repeating units (sarcomeres) of the contractile myofibrils are arranged in registry throughout the cell, resulting in transverse or oblique striations observable at the level of the light microscope. |
| centromeric DNA binding | (GO:0019237) | molecular_function | Interacting selectively and non-covalently with a centromere, a region of chromosome where the spindle fibers attach during mitosis and meiosis. |
| telomeric DNA binding | (GO:0042162) | molecular_function | Interacting selectively and non-covalently with a telomere, a specific structure at the end of a linear chromosome required for the integrity and maintenance of the end. |
| receptor tyrosine kinase binding | (GO:0030971) | molecular_function | Interacting selectively and non-covalently with a receptor that possesses protein tyrosine kinase activity. |
| transforming growth factor beta binding | (GO:0050431) | molecular_function | Interacting selectively and non-covalently with TGF-beta, transforming growth factor beta, a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types. |
| heart development | (GO:0007507) | biological_process | The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood. |
| courtship behavior | (GO:0007619) | biological_process | The behavioral interactions between organisms for the purpose of attracting sexual partners. |
| beta-catenin binding | (GO:0008013) | molecular_function | Interacting selectively and non-covalently with the beta subunit of the catenin complex. |
| microtubule binding | (GO:0008017) | molecular_function | Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. |
| protein C-terminus binding | (GO:0008022) | molecular_function | Interacting selectively and non-covalently with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue. |
| benzodiazepine receptor binding | (GO:0030156) | molecular_function | Interacting selectively and non-covalently with the peripheral benzodiazepine receptor (PBR). |
| diazepam binding | (GO:0050809) | molecular_function | Interacting selectively and non-covalently with diazepam, one of the most widely used benzodiazepine drugs. It is used as an anti-anxiety-hypnotic agent and has the proprietary name Valium. |
| GABA receptor binding | (GO:0050811) | molecular_function | Interacting selectively and non-covalently with the gamma-aminobutyric acid (GABA, 4-aminobutyrate) receptor. |
| obsolete lipoprotein binding | (GO:0008034) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with any conjugated, water-soluble protein in which the nonprotein group consists of a lipid or lipids. This term was made obsolete because its text definition and implicit ontology-structure definition disagreed, and as a result the term had been used in annotations with more than one meaning. |
| lipopeptide binding | (GO:0071723) | molecular_function | Interacting selectively and non-covalently with a lipopeptide, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds and containing a nonprotein group consisting of a lipid or lipids. |
| lipoprotein particle binding | (GO:0071813) | molecular_function | Interacting selectively and non-covalently with a lipoprotein particle. A lipoprotein particle, also known as a lipoprotein, is a clathrate complex consisting of a lipid enwrapped in a protein host without covalent binding in such a way that the complex has a hydrophilic outer surface consisting of all the protein and the polar ends of any phospholipids. |
| high-density lipoprotein particle binding | (GO:0008035) | molecular_function | Interacting selectively and non-covalently with high-density lipoprotein particle, a lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE. |
| male courtship behavior | (GO:0008049) | biological_process | The behavior of a male, for the purpose of attracting a sexual partner. An example of this process is found in Drosophila melanogaster. |
| female courtship behavior | (GO:0008050) | biological_process | The behavior of a female, for the purpose of attracting a sexual partner. |
| chitin binding | (GO:0008061) | molecular_function | Interacting selectively and non-covalently with chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. |
| imaginal disc growth factor receptor binding | (GO:0008084) | molecular_function | Interacting selectively and non-covalently with an imaginal disc growth factor receptor. |
| spectrin | (GO:0008091) | cellular_component | Membrane associated dimeric protein (240 and 220 kDa) of erythrocytes. Forms a complex with ankyrin, actin and probably other components of the membrane cytoskeleton, so that there is a mesh of proteins underlying the plasma membrane, potentially restricting the lateral mobility of integral proteins. |
| cytoskeletal protein binding | (GO:0008092) | molecular_function | Interacting selectively and non-covalently with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton). |
| 5S rRNA binding | (GO:0008097) | molecular_function | Interacting selectively and non-covalently with 5S ribosomal RNA, the smallest RNA constituent of a ribosome. |
| 5S rRNA primary transcript binding | (GO:0008098) | molecular_function | Interacting selectively and non-covalently with the unprocessed 5S ribosomal RNA transcript. |
| translation factor activity, RNA binding | (GO:0008135) | molecular_function | Functions during translation by interacting selectively and non-covalently with RNA during polypeptide synthesis at the ribosome. |
| nuclear localization sequence binding | (GO:0008139) | molecular_function | Interacting selectively and non-covalently with a nuclear localization sequence, a specific peptide sequence that acts as a signal to localize the protein within the nucleus. |
| cAMP response element binding protein binding | (GO:0008140) | molecular_function | Interacting selectively and non-covalently with a cAMP response element binding protein (a CREB protein). |
| oxysterol binding | (GO:0008142) | molecular_function | Interacting selectively and non-covalently with oxysterol, an oxidized form of cholesterol. |
| drug binding | (GO:0008144) | molecular_function | Interacting selectively and non-covalently with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease. |
| phenylalkylamine binding | (GO:0008145) | molecular_function | Interacting selectively and non-covalently with phenylalkylamine or any of its derivatives. |
| obsolete negative transcription elongation factor activity | (GO:0008148) | molecular_function | OBSOLETE. Any activity that decreases the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule following transcription initiation. This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. |
| protein phosphatase 1 binding | (GO:0008157) | molecular_function | Interacting selectively and non-covalently with the enzyme protein phosphatase 1. |
| obsolete positive transcription elongation factor activity | (GO:0008159) | molecular_function | OBSOLETE. Any activity that increases the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule following transcription initiation. This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. |
| adenylate cyclase binding | (GO:0008179) | molecular_function | Interacting selectively and non-covalently with the enzyme adenylate cyclase. |
| poly-pyrimidine tract binding | (GO:0008187) | molecular_function | Interacting selectively and non-covalently with any stretch of pyrimidines (cytosine or uracil) in an RNA molecule. |
| eukaryotic initiation factor 4E binding | (GO:0008190) | molecular_function | Interacting selectively and non-covalently with eukaryotic initiation factor 4E, a polypeptide factor involved in the initiation of ribosome-mediated translation. |
| ferrous iron binding | (GO:0008198) | molecular_function | Interacting selectively and non-covalently with ferrous iron, Fe(II). |
| ferric iron binding | (GO:0008199) | molecular_function | Interacting selectively and non-covalently with ferric iron, Fe(III). |
| heparin binding | (GO:0008201) | molecular_function | Interacting selectively and non-covalently with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues. |
| poly(U) RNA binding | (GO:0008266) | molecular_function | Interacting selectively and non-covalently with a sequence of uracil residues in an RNA molecule. |
| poly-glutamine tract binding | (GO:0008267) | molecular_function | Interacting selectively and non-covalently with a polyglutamine tract, i.e. a series of consecutive glutamine residues, in a protein. |
| zinc ion binding | (GO:0008270) | molecular_function | Interacting selectively and non-covalently with zinc (Zn) ions. |
| 7S RNA binding | (GO:0008312) | molecular_function | Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP). |
| gurken receptor binding | (GO:0008317) | molecular_function | Interacting selectively and non-covalently with the gurken growth factor receptor. |
| methyl-CpG binding | (GO:0008327) | molecular_function | Interacting selectively and non-covalently with a methylated cytosine/guanine dinucleotide. |
| phosphatidylethanolamine binding | (GO:0008429) | molecular_function | Interacting selectively and non-covalently with phosphatidylethanolamine, any of a class of glycerophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of ethanolamine. |
| selenium binding | (GO:0008430) | molecular_function | Interacting selectively and non-covalently with selenium (Se). |
| vitamin E binding | (GO:0008431) | molecular_function | Interacting selectively and non-covalently with vitamin E, tocopherol, which includes a series of eight structurally similar compounds. Alpha-tocopherol is the most active form in humans and is a powerful biological antioxidant. |
| JUN kinase binding | (GO:0008432) | molecular_function | Interacting selectively and non-covalently with JUN kinase, an enzyme that catalyzes the phosphorylation and activation of members of the JUN family. |
| calcitriol receptor activity | (GO:0008434) | molecular_function | Combining with calcitriol, the hormonally active form of vitamin D3, and transmitting the signal to the transcriptional machinery by interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. |
| glycine binding | (GO:0016594) | molecular_function | Interacting selectively and non-covalently with glycine, aminoethanoic acid. |
| glutamate binding | (GO:0016595) | molecular_function | Interacting selectively and non-covalently with glutamate, the anion of 2-aminopentanedioic acid. |
| thienylcyclohexylpiperidine binding | (GO:0016596) | molecular_function | Interacting selectively and non-covalently with thienylcyclohexylpiperidine. |
| obsolete non-chaperonin molecular chaperone ATPase activity | (GO:0008571) | molecular_function | OBSOLETE. Catalysis of the reaction: ATP + H2O = ADP + phosphate. This is a highly diverse group of enzymes that perform many functions that are similar to those of chaperonins. They comprise a number of heat-shock-cognate proteins. They are also active in clathrin uncoating and in the oligomerization of actin. This term was made obsolete because it represents a class of gene products. |
| identical protein binding | (GO:0042802) | molecular_function | Interacting selectively and non-covalently with an identical protein or proteins. |
| penicillin binding | (GO:0008658) | molecular_function | Interacting selectively and non-covalently with penicillin, any antibiotic that contains the condensed beta-lactamthiazolidine ring system. |
| biotin binding | (GO:0009374) | molecular_function | Interacting selectively and non-covalently with biotin (cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid), the (+) enantiomer of which is very widely distributed in cells and serves as a carrier in a number of enzymatic beta-carboxylation reactions. |
| obsolete cytochrome b/b6 | (GO:0009463) | molecular_function | OBSOLETE. Diheme cytochrome b; cytochrome b has the hemes b(562) and b(566) and is a component of the mitochondrial respiratory chain complex III. Cytochrome b6 is a component of bc complex acting between photosystems II and I of photosynthesis. This term was made obsolete because it represents a gene product. |
| amino-terminal vacuolar sorting propeptide binding | (GO:0009940) | molecular_function | Interacting selectively and non-covalently with an amino terminal propeptide, which functions as a sorting signal to sort away the soluble vacuolar protein from Golgi to lytic vacuole via clathrin-coated vesicles. |
| auxin binding | (GO:0010011) | molecular_function | Interacting selectively and non-covalently with auxin, plant hormones that regulate aspects of plant growth. |
| N-1-naphthylphthalamic acid binding | (GO:0010013) | molecular_function | Interacting selectively and non-covalently with N-1-naphthylphthalamic acid, an auxin transport inhibitor. |
| mycothiol biosynthetic process | (GO:0010125) | biological_process | The chemical reactions and pathways resulting in the formation of mycothiol, which consists of N-acetyl-L-cysteine linked to a pseudodisaccharide, D-glucosamine and myo-inositol. Mycothiol is produced in actinomycetes like mycobacteria and serves similar functions to glutathione. |
| mycothiol metabolic process | (GO:0010126) | biological_process | The chemical reactions and pathways involving mycothiol, which consists of N-acetyl-L-cysteine linked to a pseudodisaccharide, D-glucosamine and myo-inositol. Mycothiol is produced in actinomycetes like mycobacteria and serves similar functions to glutathione. |
| thioglucosidase binding | (GO:0010180) | molecular_function | Interacting selectively and non-covalently with the enzyme thioglucosidase. |
| FMN binding | (GO:0010181) | molecular_function | Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. |
| vacuolar sorting signal binding | (GO:0010209) | molecular_function | Interacting selectively and non-covalently with a vacuolar sorting signal, a specific peptide sequence that acts as a signal to localize the protein within the vacuole. |
| production of ta-siRNAs involved in RNA interference | (GO:0010267) | biological_process | Cleavage of double-stranded RNA to form trans-acting small interfering RNA molecules (siRNAs) of 21-23 nucleotides. ta-siRNAs arise from PolII genes and function like miRNAs to guide cleavage of target mRNAs. |
| heteropolysaccharide binding | (GO:0010297) | molecular_function | Interacting selectively and non-covalently with heteropolysaccharides. A heteropolysaccharide is a glycan composed of more than one type of monosaccharide residue. |
| phytochrome binding | (GO:0010313) | molecular_function | Interacting selectively and non-covalently with phytochrome. |
| phosphatidylinositol-5-phosphate binding | (GO:0010314) | molecular_function | Interacting selectively and non-covalently with phosphatidylinositol-5-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 5' position. |
| gibberellin binding | (GO:0010331) | molecular_function | Interacting selectively and non-covalently with gibberellins, plant hormones that regulate aspects of plant growth. |
| double-stranded methylated DNA binding | (GO:0010385) | molecular_function | Interacting selectively and non-covalently with double-stranded methylated DNA. Methylation of cytosine or adenine in DNA is an important mechanism for establishing stable heritable epigenetic marks. |
| abscisic acid binding | (GO:0010427) | molecular_function | Interacting selectively and non-covalently with abscisic acid, plant hormones that regulate aspects of plant growth. |
| methyl-CpNpG binding | (GO:0010428) | molecular_function | Interacting selectively and non-covalently with a methylated cytosine/unspecified/guanine trinucleotide. |
| methyl-CpNpN binding | (GO:0010429) | molecular_function | Interacting selectively and non-covalently with a methylated cytosine/unspecified/unspecified trinucleotide. |
| Hsp27 protein binding | (GO:0051008) | molecular_function | Interacting selectively and non-covalently with Hsp27 proteins, a lightweight heat shock protein. |
| misfolded protein binding | (GO:0051787) | molecular_function | Interacting selectively and non-covalently with a misfolded protein. |
| Hsp90 protein binding | (GO:0051879) | molecular_function | Interacting selectively and non-covalently with Hsp90 proteins, any of a group of heat shock proteins around 90kDa in size. |
| positive regulation of transcription via serum response element binding | (GO:0010735) | biological_process | Any process that increases the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific set of genes as a result of a transcription factor interacting with a serum response element (SRE). A serum response element is a short sequence with dyad symmetry found in the promoters of some of the cellular immediate-early genes, regulated by serum. |
| serum response element binding | (GO:0010736) | molecular_function | Interacting selectively and non-covalently with the serum response element (SRE), a short sequence with dyad symmetry found in the promoters of some of the cellular immediate-early genes, regulated by serum. |
| obsolete promoter binding | (GO:0010843) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with the regulatory region composed of the transcription start site and binding sites for transcription factor complexes of the basal transcription machinery. This term was made obsolete because the word "promoter" is used ambiguously in the literature. It sometimes is used to refer specifically to the "core promoter" region recognized by the basal transcription machinery, and other times is used to refer to a larger regulatory region composed of the core promoter and also the regulatory region adjacent (proximal) to the core promoter. The core promoter proximal region is typically recognized by "regulatory transcription factors", such as Gal4 in S. cerevisiae. |
| transcription regulatory region DNA binding | (GO:0044212) | molecular_function | Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors. |
| recombination hotspot binding | (GO:0010844) | molecular_function | Interacting selectively and non-covalently with a region in a genome which promotes recombination. |
| regulation of blood pressure by chemoreceptor signaling pathway | (GO:0010850) | biological_process | A series of reactions within the cell that occur as a result of a single trigger reaction or compound interacting with a chemoreceptor resulting in a modulation of the force with which blood travels through the circulatory system. Chemoreceptors respond to oxygen, carbon dioxide and hydrogen ions. |
| anaphase-promoting complex binding | (GO:0010997) | molecular_function | Interacting selectively and non-covalently with an anaphase-promoting complex. A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis. |
| monolayer-surrounded lipid storage body | (GO:0012511) | cellular_component | A subcellular organelle of plant cells surrounded by 'half-unit' or a monolayer membrane instead of the more usual bilayer. The storage body has a droplet of triglyceride surrounded by a monolayer of phospholipids, interacting with the triglycerides and the hydrophilic head groups facing the cytosol, and containing major protein components called oleosins. |
| oscillatory muscle contraction | (GO:0014703) | biological_process | A process in which force is generated within oscillatory skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Oscillatory muscle contraction occurs in insect wing muscles and is characterized by asynchrony between action potential and contraction and by stretch activation. |
| tonic skeletal muscle contraction | (GO:0014720) | biological_process | A process in which force is generated within tonic skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The tonic skeletal muscle is characterized by long lasting contractile responses and high resistance to fatigue. |
| twitch skeletal muscle contraction | (GO:0014721) | biological_process | A process in which force is generated within twitch skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The twitch skeletal muscle responds to neurostimulations with a contraction followed by a relaxation. |
| tonic smooth muscle contraction | (GO:0014820) | biological_process | A process in which force is generated within tonic smooth muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. In the tonic smooth muscle, the muscle contraction occurs without an ordered sarcomeric structure. Tonic smooth muscle contraction occurs as a sustained continuous contraction. |
| phasic smooth muscle contraction | (GO:0014821) | biological_process | A process in which force is generated within phasic smooth muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. In the phasic smooth muscle, the muscle contraction occurs without an ordered sarcomeric structure. Phasic smooth muscle contraction occurs in a series of discrete contractions and relaxations. |
| artery smooth muscle contraction | (GO:0014824) | biological_process | A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the artery. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The artery is a vessel carrying blood away from the heart. |
| stomach fundus smooth muscle contraction | (GO:0014825) | biological_process | A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the fundus of stomach. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The fundus is the portion of the stomach that lies above the cardiac notch. |
| vein smooth muscle contraction | (GO:0014826) | biological_process | A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the vein. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The vein is a vessel carrying blood away from the capillary beds. |
| intestine smooth muscle contraction | (GO:0014827) | biological_process | A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the intestine. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The intestine is the section of the alimentary canal from the stomach to the anal canal. It includes the large intestine and small intestine. |
| distal stomach smooth muscle contraction | (GO:0014828) | biological_process | A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the distal stomach. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The distal stomach is composed of the lower body and antrum and develops strong peristaltic phasic contractions that increase in amplitude as they propagate toward the pylorus. |
| vascular smooth muscle contraction | (GO:0014829) | biological_process | A process, occurring in the vascular tissue, whereby actin/myosin complex activity generates force through ATP hydrolysis resulting in a change in smooth muscle geometry. This process is always coupled to chemo-mechanical energy conversion. |
| arteriole smooth muscle contraction | (GO:0014830) | biological_process | A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the arteriole. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The arteriole is the smallest division of the artery located between the muscular arteries and the capillaries. |
| gastro-intestinal system smooth muscle contraction | (GO:0014831) | biological_process | A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the gastro-intestinal system. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The gastro-intestinal system generally refers to the digestive structures stretching from the mouth to anus, but does not include the accessory glandular organs (liver, pancreas and biliary tract). |
| urinary bladder smooth muscle contraction | (GO:0014832) | biological_process | A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the urinary bladder. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The urinary bladder is a musculomembranous sac along the urinary tract. |
| stomach body smooth muscle contraction | (GO:0014845) | biological_process | A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the body of stomach. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The body of stomach is the part of the stomach that lies between the fundus above and the pyloric antrum below; its boundaries are poorly defined. |
| esophagus smooth muscle contraction | (GO:0014846) | biological_process | A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the esophagus. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The esophagus is the muscular membranous segment between the pharynx and the stomach in the upper gastrointestinal tract. |
| proximal stomach smooth muscle contraction | (GO:0014847) | biological_process | A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the proximal stomach. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The proximal stomach, composed of the fundus and upper body, shows low frequency, sustained tonic contractions that are responsible for generating a basal pressure within the stomach. |
| urinary tract smooth muscle contraction | (GO:0014848) | biological_process | A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the urinary tract. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The urinary tract consists of organs of the body that produce and discharge urine. These include the kidneys, ureters, bladder, and urethra. |
| ureter smooth muscle contraction | (GO:0014849) | biological_process | A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the ureter. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The ureter is one of a pair of thick-walled tubes that transports urine from the kidney pelvis to the urinary bladder. |
| cross bridge formation involved in regulation of the velocity of shortening in skeletal muscle contraction | (GO:0014871) | biological_process | The process in which actin and myosin interact, split ATP and generate force during skeletal muscle contraction. This process is one of the components of the regulation of the force of skeletal muscle contraction. |
| regulation of myofibril size | (GO:0014881) | biological_process | Any process that modulates the size of myofibrils. A myofibril is the contractile element of skeletal and cardiac muscle. It is a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism. |
| regulation of myofibril number | (GO:0014882) | biological_process | Any process that modulates the number of myofibrils. A myofibril is the contractile element of skeletal and cardiac muscle. It is a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism. |
| transition between fast and slow fiber | (GO:0014883) | biological_process | The process of conversion of fast-contracting muscle fibers to a slower character. This may involve slowing of contractile rate, slow myosin gene induction, increase in oxidative metabolic properties, altered electrophysiology and altered innervation. This process also regulates skeletal muscle adapatation. |
| transition between slow and fast fiber | (GO:0014886) | biological_process | The process of conversion of slow-contracting muscle fibers to a faster character. This may involve increasing of contractile rate, fast myosin gene induction, increase in glycolytic metabolic properties, altered electrophysiology and altered innervation. This process also regulates skeletal muscle adapatation. |
| obsolete plastocyanin | (GO:0015006) | molecular_function | OBSOLETE. A copper-containing electron carrier acting between cytochrome b(6)-f and P700 of photosystem I. This term was made obsolete because it does not represent a molecular function. |
| obsolete cytochrome P450 activity | (GO:0015034) | molecular_function | OBSOLETE. A cytochrome b-like protein that has a sulfur atom ligated to the iron of the prosthetic group (heme-thiolate); enzymes: typically monooxygenases acting on, typically, lipophilic substrates. The characteristic mode of action of these enzymes is not electron transfer (some P450 enzymes probably do not even involve the reversible Fe(II)/Fe(III) equilibrium), but rather oxygen atom transfer. This term was made obsolete because it is a grouping term representing a set of gene products. |
| oxygen binding | (GO:0019825) | molecular_function | Interacting selectively and non-covalently with oxygen (O2). |
| retinal binding | (GO:0016918) | molecular_function | Interacting selectively and non-covalently with retinal, one of the forms of vitamin A. Retinal plays an important role in the visual process in most vertebrates, combining with opsins to form visual pigments in the retina. |
| 3,4-didehydroretinal binding | (GO:0046876) | molecular_function | Interacting selectively and non-covalently with 3,4-didehydroretinal, a form of retinal that plays a role in the visual process in freshwater fish and some amphibians analogous to that of all-trans retinal in other vertebrates. 3,4-didehydro-11-cis-retinal combines with an opsin to form cyanopsin (cone) or porphyropsin (rod). |
| toxin activity | (GO:0090729) | molecular_function | Interacting selectively with one or more biological molecules in another organism (the "target" organism), initiating pathogenesis (leading to an abnormal, generally detrimental state) in the target organism. The activity should refer to an evolved function of the active gene product, i.e. one that was selected for. Examples include the activity of botulinum toxin, and snake venom. |
| cholesterol binding | (GO:0015485) | molecular_function | Interacting selectively and non-covalently with cholesterol (cholest-5-en-3-beta-ol); the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. |
| iron-chelate-transporting ATPase activity | (GO:0015623) | molecular_function | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + iron chelate(out) = ADP + phosphate + iron chelate(in). Fe-enterobactin, Fe-dicitrate, Fe-hydroxamate and other siderophores are imported. |
| tubulin binding | (GO:0015631) | molecular_function | Interacting selectively and non-covalently with monomeric or multimeric forms of tubulin, including microtubules. |
| toxic substance binding | (GO:0015643) | molecular_function | Interacting selectively and non-covalently with a toxic substance, a poisonous substance that causes damage to biological systems. |
| nickel cation binding | (GO:0016151) | molecular_function | Interacting selectively and non-covalently with nickel (Ni) cations. |
| chlorophyll binding | (GO:0016168) | molecular_function | Interacting selectively and non-covalently with chlorophyll; any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment. |
| bacteriochlorophyll c binding | (GO:0016169) | molecular_function | Interacting selectively and non-covalently with bacteriochlorophyll c, a chlorophyll of photosynthetic bacteria, for example green sulfur bacteria. |
| interleukin-15 receptor binding | (GO:0016170) | molecular_function | Interacting selectively and non-covalently with the interleukin-15 receptor. |
| ice binding | (GO:0050825) | molecular_function | Interacting selectively and non-covalently with ice, water reduced to the solid state by cold temperature. It is a white or transparent colorless substance, crystalline, brittle, and viscoidal. |
| AMP binding | (GO:0016208) | molecular_function | Interacting selectively and non-covalently with AMP, adenosine monophosphate. |
| obsolete nonspecific RNA polymerase II transcription factor activity | (GO:0016252) | molecular_function | OBSOLETE. Any function that supports transcription of genes by RNA polymerase II, and is not specific to a particular gene or gene set. This term was obsoleted because "general/nonspecific/basal" transcription vs "specific" transcription were determined not to be separable, distinct process. Thus, terms trying to distinguish "general/nonspecific/basal" transcription from "specific" transcription were removed from both the Molecular Function and the Biological Process ontologies. In addition, this Molecular Function term was defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. |
| catenin complex | (GO:0016342) | cellular_component | Complex of peripheral cytoplasmic proteins (alpha-, beta- and gamma-catenin) that interact with the cytoplasmic region of uvomorulin/E-cadherin to connect it to the actin cytoskeleton. |
| myosin complex | (GO:0016459) | cellular_component | A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes. |
| obsolete transcription activator activity | (GO:0016563) | molecular_function | OBSOLETE. Any transcription regulator activity required for initiation or upregulation of transcription. This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. |
| obsolete transcription repressor activity | (GO:0016564) | molecular_function | OBSOLETE. Any transcription regulator activity that prevents or downregulates transcription. This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. |
| obsolete general transcriptional repressor activity | (GO:0016565) | molecular_function | OBSOLETE. Any activity that stops or downregulates transcription of genes globally, and is not specific to a particular gene or gene set. This term was obsoleted because "general/nonspecific/basal" transcription vs "specific" transcription were determined not to be separable, distinct process. Thus, terms trying to distinguish "general/nonspecific/basal" transcription from "specific" transcription were removed from both the Molecular Function and the Biological Process ontologies. In addition, this Molecular Function term was defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of your repressor is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. |
| obsolete specific transcriptional repressor activity | (GO:0016566) | molecular_function | OBSOLETE. Any activity that stops or downregulates transcription of specific genes or sets of genes. This term was obsoleted because "general/nonspecific/basal" transcription vs "specific" transcription were determined not to be separable, distinct process. Thus, terms trying to distinguish "general/nonspecific/basal" transcription from "specific" transcription were removed from both the Molecular Function and the Biological Process ontologies. In addition, this Molecular Function term was defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of your repressor is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. |
| amino acid binding | (GO:0016597) | molecular_function | Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents. |
| CCAAT-binding factor complex | (GO:0016602) | cellular_component | A heteromeric transcription factor complex that binds to the CCAAT-box upstream of promoters; functions as both an activator and a repressor, depending on its interacting cofactors. Typically trimeric consisting of NFYA, NFYB and NFYC subunits. In Saccharomyces, it activates the transcription of genes in response to growth in a nonfermentable carbon source and consists of four known subunits: HAP2, HAP3, HAP4 and HAP5. |
| lyase activity | (GO:0016829) | molecular_function | Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. |
| carbon-nitrogen lyase activity | (GO:0016840) | molecular_function | Catalysis of the release of ammonia or one of its derivatives, with the formation of a double bond or ring. Enzymes with this activity may catalyze the actual elimination of the ammonia, amine or amide, e.g. CH-CH(-NH-R) = C=CH- + NH2-R. Others, however, catalyze elimination of another component, e.g. water, which is followed by spontaneous reactions that lead to breakage of the C-N bond, e.g. L-serine ammonia-lyase (EC:4.3.1.17), so that the overall reaction is C(-OH)-CH(-NH2) = CH2-CO- + NH3, i.e. an elimination with rearrangement. The sub-subclasses of EC:4.3 are the ammonia-lyases (EC:4.3.1), lyases acting on amides, amidines, etc. (EC:4.3.2), the amine-lyases (EC:4.3.3), and other carbon-nitrogen lyases (EC:4.3.99). |
| nuclear receptor binding | (GO:0016922) | molecular_function | Interacting selectively and non-covalently, in a ligand dependent manner, with a nuclear receptor protein. |
| thyroid hormone receptor binding | (GO:0046966) | molecular_function | Interacting selectively and non-covalently with a thyroid hormone receptor. |
| obsolete RNA polymerase I transcription elongation factor activity | (GO:0016943) | molecular_function | OBSOLETE. Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule catalyzed by RNA polymerase I following transcription initiation. This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. |
| obsolete RNA polymerase II transcription elongation factor activity | (GO:0016944) | molecular_function | OBSOLETE. Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule catalyzed by RNA polymerase II following transcription initiation. This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. |
| obsolete RNA polymerase III transcription elongation factor activity | (GO:0016945) | molecular_function | OBSOLETE. Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule catalyzed by RNA polymerase III following transcription initiation. This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. |
| obsolete transcription initiation factor activity | (GO:0016986) | molecular_function | OBSOLETE. Plays a role in regulating transcription initiation. This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. |
| Ras GTPase binding | (GO:0017016) | molecular_function | Interacting selectively and non-covalently with any member of the Ras superfamily of monomeric GTPases. |
| myosin binding | (GO:0017022) | molecular_function | Interacting selectively and non-covalently with any part of a myosin complex; myosins are any of a superfamily of molecular motor proteins that bind to actin and use the energy of ATP hydrolysis to generate force and movement along actin filaments. |
| myosin I binding | (GO:0017024) | molecular_function | Interacting selectively and non-covalently with a class I myosin; myosin I heavy chains are single-headed, possess tails of various lengths, and do not self-associate into bipolar filaments. |
| TBP-class protein binding | (GO:0017025) | molecular_function | Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs). |
| peptide hormone binding | (GO:0017046) | molecular_function | Interacting selectively and non-covalently with any peptide with hormonal activity in animals. |
| Rho GTPase binding | (GO:0017048) | molecular_function | Interacting selectively and non-covalently with Rho protein, any member of the Rho subfamily of the Ras superfamily of monomeric GTPases. Proteins in the Rho subfamily are involved in relaying signals from cell-surface receptors to the actin cytoskeleton. |
| GTP-Rho binding | (GO:0017049) | molecular_function | Interacting selectively and non-covalently with the GTP-bound form of the Rho protein. |
| FH1 domain binding | (GO:0017058) | molecular_function | Interacting selectively and non-covalently with a FH1 domain of a protein, a proline-rich domain, usually located in front of a FH2 domain. |
| U6 snRNA binding | (GO:0017070) | molecular_function | Interacting selectively and non-covalently with the U6 small nuclear RNA (U6 snRNA). |
| syntaxin-1 binding | (GO:0017075) | molecular_function | Interacting selectively and non-covalently with the SNAP receptor syntaxin-1. |
| purine nucleotide binding | (GO:0017076) | molecular_function | Interacting selectively and non-covalently with purine nucleotides, any compound consisting of a purine nucleoside esterified with (ortho)phosphate. |
| heat shock protein binding | (GO:0031072) | molecular_function | Interacting selectively and non-covalently with a heat shock protein, any protein synthesized or activated in response to heat shock. |
| mineralocorticoid receptor activity | (GO:0017082) | molecular_function | Combining with a mineralocorticoid and transmitting the signal to the transcriptional machinery by interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. |
| AU-rich element binding | (GO:0017091) | molecular_function | Interacting selectively and non-covalently with a region of RNA containing frequent adenine and uridine bases. |
| sulfonylurea receptor binding | (GO:0017098) | molecular_function | Interacting selectively and non-covalently with the sulfonylurea receptor, a regulatory subunit of the ATP-sensitive potassium ion channel. |
| obsolete polyphosphatidylinositol phosphatase activity | (GO:0017120) | molecular_function | OBSOLETE. Catalysis of the conversion of phosphatidylinositol-3-phosphate, phosphatidylinositol-4-phosphate, and phosphatidylinositol-3,5-bisphosphate, but not PI-4,5-bisphosphate, to phosphatidylinositol; PPIPase activity is a key regulator of membrane trafficking and actin cytoskeleton organization. This term was made obsolete because it represents a gene product. |
| SH3 domain binding | (GO:0017124) | molecular_function | Interacting selectively and non-covalently with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins. |
| triglyceride binding | (GO:0017129) | molecular_function | Interacting selectively and non-covalently with any triester of glycerol. |
| poly(C) RNA binding | (GO:0017130) | molecular_function | Interacting selectively and non-covalently with a sequence of cytosine residues in an RNA molecule. |
| uridine-rich cytoplasmic polyadenylylation element binding | (GO:0017131) | molecular_function | Interacting selectively and non-covalently with U-rich sequence in the 3'-end of nuclear-transcribed mRNAs; required for cytoplasmic polyadenylylation. |
| fibroblast growth factor binding | (GO:0017134) | molecular_function | Interacting selectively and non-covalently with a fibroblast growth factor. |
| enzyme binding | (GO:0019899) | molecular_function | Interacting selectively and non-covalently with any enzyme. |
| Rab GTPase binding | (GO:0017137) | molecular_function | Interacting selectively and non-covalently with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases. |
| Wnt-protein binding | (GO:0017147) | molecular_function | Interacting selectively and non-covalently with Wnt-protein, a secreted growth factor involved in signaling. |
| DEAD/H-box RNA helicase binding | (GO:0017151) | molecular_function | Interacting selectively and non-covalently with the enzyme DEAD/H-box RNA helicase. |
| Ral GTPase binding | (GO:0017160) | molecular_function | Interacting selectively and non-covalently with Ral protein, any member of the Ral subfamily of the Ras superfamily of monomeric GTPases. |
| aryl hydrocarbon receptor binding | (GO:0017162) | molecular_function | Interacting selectively and non-covalently with an aryl hydrocarbon receptor. |
| obsolete basal transcription repressor activity | (GO:0017163) | molecular_function | OBSOLETE. Any transcription regulator activity that prevents or downregulates basal transcription. Basal transcription results from transcription that is controlled by the minimal complement of proteins necessary to reconstitute transcription from a minimal promoter. This term was obsoleted because "general/nonspecific/basal" transcription vs "specific" transcription were determined not to be separable, distinct process. Thus, terms trying to distinguish "general/nonspecific/basal" transcription from "specific" transcription were removed from both the Molecular Function and the Biological Process ontologies. In addition, this Molecular Function term was defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of your repressor is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. |
| vinculin binding | (GO:0017166) | molecular_function | Interacting selectively and non-covalently with vinculin, a protein found in muscle, fibroblasts, and epithelial cells that binds actin and appears to mediate attachment of actin filaments to integral proteins of the plasma membrane. |
| obsolete KU70 binding | (GO:0017170) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with Ku70, a protein involved in non-homologous DNA end joining. This term was made obsolete because it represents binding to an individual protein. |
| guanyl nucleotide binding | (GO:0019001) | molecular_function | Interacting selectively and non-covalently with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate. |
| GMP binding | (GO:0019002) | molecular_function | Interacting selectively and non-covalently with GMP, guanosine monophosphate. |
| GDP binding | (GO:0019003) | molecular_function | Interacting selectively and non-covalently with GDP, guanosine 5'-diphosphate. |
| pyrimidine nucleotide binding | (GO:0019103) | molecular_function | Interacting selectively and non-covalently with pyrimidine nucleotide, any compound consisting of a pyrimidine nucleoside esterified with (ortho)phosphate. |
| obsolete nucleotide phosphatase activity | (GO:0019204) | molecular_function | OBSOLETE: Catalysis of the reaction: phosphopolynucleotide + H2O = polynucleotide + phosphate. This term was defined to cover phosphatase activity against polynucleotides, but had subclasses and annotations for phosphatase activity against free nucleotides. It has therefore been split. Use GO:0098519 (nucleotide phosphatase activity, acting against free nucleotides) or GO:0098518 (polynucleotide phosphatase activity). |
| intermediate filament binding | (GO:0019215) | molecular_function | Interacting selectively and non-covalently with an intermediate filament, a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of higher eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. |
| removal of superoxide radicals | (GO:0019430) | biological_process | Any process, acting at the cellular level, involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2). |
| cyanide metabolic process | (GO:0019499) | biological_process | The chemical reactions and pathways involving cyanide, NC-, the anion of hydrocyanic acid. Cyanide is a potent inhibitor of respiration, reacting with the ferric form of cytochrome aa3 and thus blocking the electron transport chain. |
| polyamine binding | (GO:0019808) | molecular_function | Interacting selectively and non-covalently with polyamines, organic compounds containing two or more amino groups. |
| spermidine binding | (GO:0019809) | molecular_function | Interacting selectively and non-covalently with spermidine, N-(3-aminopropyl)-1,4-diaminobutane. |
| putrescine binding | (GO:0019810) | molecular_function | Interacting selectively and non-covalently with putrescine, 1,4-diaminobutane, the polyamine formed by decarboxylation of ornithine and the metabolic precursor of spermidine and spermine. |
| cocaine binding | (GO:0019811) | molecular_function | Interacting selectively and non-covalently with cocaine (2-beta-carbomethoxy-3-beta-benzoxytropane), an alkaloid obtained from dried leaves of the South American shrub Erythroxylon coca or by chemical synthesis. |
| oxygen sensor activity | (GO:0019826) | molecular_function | Interacting selectively and non-covalently with and responding, e.g. by conformational change, to changes in the cellular level of oxygen (O2). |
| isoprenoid binding | (GO:0019840) | molecular_function | Interacting selectively and non-covalently with any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. |
| retinol binding | (GO:0019841) | molecular_function | Interacting selectively and non-covalently with retinol, vitamin A1, 2,6,6-trimethyl-1-(9'-hydroxy-3',7'-dimethylnona-1',3',5',7'-tetraenyl)cyclohex-1-ene, one of the three components that makes up vitamin A. Retinol is an intermediate in the vision cycle and it also plays a role in growth and differentiation. |
| vitamin binding | (GO:0019842) | molecular_function | Interacting selectively and non-covalently with a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. |
| rRNA binding | (GO:0019843) | molecular_function | Interacting selectively and non-covalently with ribosomal RNA. |
| IgA binding | (GO:0019862) | molecular_function | Interacting selectively and non-covalently with an immunoglobulin of an IgA isotype. |
| IgE binding | (GO:0019863) | molecular_function | Interacting selectively and non-covalently with an immunoglobulin of the IgE isotype. |
| IgG binding | (GO:0019864) | molecular_function | Interacting selectively and non-covalently with an immunoglobulin of an IgG isotype. |
| immunoglobulin binding | (GO:0019865) | molecular_function | Interacting selectively and non-covalently with an immunoglobulin. |
| kinesin binding | (GO:0019894) | molecular_function | Interacting selectively and non-covalently and stoichiometrically with kinesin, a member of a superfamily of microtubule-based motor proteins that perform force-generating tasks such as organelle transport and chromosome segregation. |
| kinase binding | (GO:0019900) | molecular_function | Interacting selectively and non-covalently with a kinase, any enzyme that catalyzes the transfer of a phosphate group. |
| protein kinase binding | (GO:0019901) | molecular_function | Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate. |
| phosphatase binding | (GO:0019902) | molecular_function | Interacting selectively and non-covalently with any phosphatase. |
| protein phosphatase binding | (GO:0019903) | molecular_function | Interacting selectively and non-covalently with any protein phosphatase. |
| protein domain specific binding | (GO:0019904) | molecular_function | Interacting selectively and non-covalently with a specific domain of a protein. |
| syntaxin binding | (GO:0019905) | molecular_function | Interacting selectively and non-covalently with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse. |
| cytokine binding | (GO:0019955) | molecular_function | Interacting selectively and non-covalently with a cytokine, any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity. |
| chemokine binding | (GO:0019956) | molecular_function | Interacting selectively and non-covalently with a chemokine. Chemokines are a family of small chemotactic cytokines; their name is derived from their ability to induce directed chemotaxis in nearby responsive cells. All chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation. Some chemokines are considered pro-inflammatory and can be induced during an immune response to recruit cells of the immune system to a site of infection, while others are considered homeostatic and are involved in controlling the migration of cells during normal processes of tissue maintenance or development. Chemokines are found in all vertebrates, some viruses and some bacteria. |
| C-C chemokine binding | (GO:0019957) | molecular_function | Interacting selectively and non-covalently with a C-C chemokine; C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif. |
| C-X-C chemokine binding | (GO:0019958) | molecular_function | Interacting selectively and non-covalently with a C-X-C chemokine; C-X-C chemokines have a single amino acid between the first two cysteines of the characteristic four cysteine motif. |
| interleukin-8 binding | (GO:0019959) | molecular_function | Interacting selectively and non-covalently with interleukin-8. |
| C-X3-C chemokine binding | (GO:0019960) | molecular_function | Interacting selectively and non-covalently with a C-X3-C chemokine; C-X3-C chemokines have three amino acids between the first two cysteines of the characteristic four-cysteine motif. |
| interferon binding | (GO:0019961) | molecular_function | Interacting selectively and non-covalently with an interferon, a protein produced by the immune systems of many animals in response to a challenge by a foreign agent. |
| type I interferon binding | (GO:0019962) | molecular_function | Interacting selectively and non-covalently with a type I interferon. Type I interferons include the interferon-alpha, beta, delta, epsilon, zeta, kappa, tau, and omega gene families. |
| interferon-gamma binding | (GO:0019964) | molecular_function | Interacting selectively and non-covalently with interferon-gamma. Interferon gamma is the only member of the type II interferon found so far. |
| interleukin-1 binding | (GO:0019966) | molecular_function | Interacting selectively and non-covalently with interleukin-1. |
| interleukin-10 binding | (GO:0019969) | molecular_function | Interacting selectively and non-covalently with interleukin-10. |
| interleukin-11 binding | (GO:0019970) | molecular_function | Interacting selectively and non-covalently with interleukin-11. |
| interleukin-12 binding | (GO:0019972) | molecular_function | Interacting selectively and non-covalently with interleukin-12. |
| interleukin-13 binding | (GO:0019973) | molecular_function | Interacting selectively and non-covalently with interleukin-13. |
| interleukin-14 binding | (GO:0019974) | molecular_function | Interacting selectively and non-covalently with interleukin-14. |
| interleukin-17 binding | (GO:0019975) | molecular_function | Interacting selectively and non-covalently with any member of the interleukin-17 family of cytokines. |
| interleukin-2 binding | (GO:0019976) | molecular_function | Interacting selectively and non-covalently with interleukin-2. |
| interleukin-21 binding | (GO:0019977) | molecular_function | Interacting selectively and non-covalently with interleukin-21. |
| interleukin-3 binding | (GO:0019978) | molecular_function | Interacting selectively and non-covalently with interleukin-3. |
| interleukin-4 binding | (GO:0019979) | molecular_function | Interacting selectively and non-covalently with interleukin-4. |
| interleukin-5 binding | (GO:0019980) | molecular_function | Interacting selectively and non-covalently with interleukin-5. |
| interleukin-6 binding | (GO:0019981) | molecular_function | Interacting selectively and non-covalently with interleukin-6. |
| interleukin-7 binding | (GO:0019982) | molecular_function | Interacting selectively and non-covalently with interleukin-7. |
| interleukin-9 binding | (GO:0019983) | molecular_function | Interacting selectively and non-covalently with interleukin-9. |
| diacylglycerol binding | (GO:0019992) | molecular_function | Interacting selectively and non-covalently with diacylglycerol, a diester of glycerol and two fatty acids. |
| heme binding | (GO:0020037) | molecular_function | Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. |
| modulation of the microfilament cytoskeleton involved in cell locomotion in cerebral cortex radial glia guided migration | (GO:0021818) | biological_process | The changes in the actin cytoskeleton that are necessary for the movement of cells along radial glial cells as a component of the process of cerebral cortex glial-mediated radial cell migration. |
| T cell receptor binding | (GO:0042608) | molecular_function | Interacting selectively and non-covalently with a T cell receptor, the antigen-recognizing receptor on the surface of T cells. |
| MHC protein complex binding | (GO:0023023) | molecular_function | Interacting selectively and non-covalently with the major histocompatibility complex. |
| MHC class I protein complex binding | (GO:0023024) | molecular_function | Interacting selectively and non-covalently with the class I major histocompatibility complex. |
| MHC class Ib protein complex binding | (GO:0023025) | molecular_function | Interacting selectively and non-covalently with the class Ib major histocompatibility complex. |
| MHC class II protein complex binding | (GO:0023026) | molecular_function | Interacting selectively and non-covalently with the class II major histocompatibility complex. |
| MHC class I protein binding, via antigen binding groove | (GO:0023027) | molecular_function | Interacting selectively and non-covalently with major histocompatibility complex class I molecules via the antigen binding groove. |
| MHC class I protein binding, via lateral surface | (GO:0023028) | molecular_function | Interacting selectively and non-covalently with major histocompatibility complex class I molecules via the lateral surface. |
| MHC class Ib protein binding | (GO:0023029) | molecular_function | Interacting selectively and non-covalently with major histocompatibility complex class Ib molecules. |
| MHC class Ib protein binding, via antigen binding groove | (GO:0023030) | molecular_function | Interacting selectively and non-covalently with major histocompatibility complex class Ib molecules via the antigen binding groove. |
| MHC class Ib protein binding, via lateral surface | (GO:0023031) | molecular_function | Interacting selectively and non-covalently with major histocompatibility complex class Ib molecules via the lateral surface. |
| myofibril | (GO:0030016) | cellular_component | The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism. |
| Z disc | (GO:0030018) | cellular_component | Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached. |
| extracellular matrix binding | (GO:0050840) | molecular_function | Interacting selectively and non-covalently with a component of the extracellular matrix. |
| lamellipodium | (GO:0030027) | cellular_component | A thin sheetlike process extended by the leading edge of a migrating cell or extending cell process; contains a dense meshwork of actin filaments. |
| microspike assembly | (GO:0030035) | biological_process | Formation of a microspike, a dynamic, actin-rich projection extending from the surface of a migrating animal cell. |
| muscle filament sliding | (GO:0030049) | biological_process | The sliding of actin thin filaments and myosin thick filaments past each other in muscle contraction. This involves a process of interaction of myosin located on a thick filament with actin located on a thin filament. During this process ATP is split and forces are generated. |
| desmosome | (GO:0030057) | cellular_component | A cell-cell junction in which: on the cytoplasmic surface of each interacting plasma membrane is a dense plaque composed of a mixture of intracellular anchor proteins; a bundle of keratin intermediate filaments is attached to the surface of each plaque; transmembrane adhesion proteins of the cadherin family bind to the plaques and interact through their extracellular domains to hold the adjacent membranes together by a Ca2+-dependent mechanism. |
| manganese ion binding | (GO:0030145) | molecular_function | Interacting selectively and non-covalently with manganese (Mn) ions. |
| molybdenum ion binding | (GO:0030151) | molecular_function | Interacting selectively and non-covalently with molybdenum (Mo) ions. |
| PDZ domain binding | (GO:0030165) | molecular_function | Interacting selectively and non-covalently with a PDZ domain of a protein, a domain found in diverse signaling proteins. |
| low-density lipoprotein particle binding | (GO:0030169) | molecular_function | Interacting selectively and non-covalently with a low-density lipoprotein particle, a lipoprotein particle that is rich in cholesterol esters and low in triglycerides, is typically composed of APOB100 and APOE, and has a density of 1.02-1.06 g/ml and a diameter of between 20-25 nm. |
| pyridoxal phosphate binding | (GO:0030170) | molecular_function | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
| troponin C binding | (GO:0030172) | molecular_function | Interacting selectively and non-covalently with troponin C, the calcium-binding subunit of the troponin complex. |
| filopodium | (GO:0030175) | cellular_component | Thin, stiff, actin-based protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal or dendritic growth cone, or a dendritic shaft. |
| semaphorin receptor binding | (GO:0030215) | molecular_function | Interacting selectively and non-covalently with semaphorin receptors. |
| skeletal muscle thin filament assembly | (GO:0030240) | biological_process | The aggregation, arrangement and bonding together of proteins to form the actin-based thin filaments of myofibrils in skeletal muscle. |
| polysaccharide binding | (GO:0030247) | molecular_function | Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. |
| cellulose binding | (GO:0030248) | molecular_function | Interacting selectively and non-covalently with cellulose. |
| LIM domain binding | (GO:0030274) | molecular_function | Interacting selectively and non-covalently with a LIM domain (for Lin-11 Isl-1 Mec-3) of a protein, a domain with seven conserved cysteine residues and a histidine, that binds two zinc ions and acts as an interface for protein-protein interactions. |
| LRR domain binding | (GO:0030275) | molecular_function | Interacting selectively and non-covalently with a LRR domain (leucine rich repeats) of a protein. |
| clathrin binding | (GO:0030276) | molecular_function | Interacting selectively and non-covalently with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles. |
| ADP-ribosylation factor binding | (GO:0030306) | molecular_function | Interacting selectively and non-covalently with ARF, ADP-ribosylation factor, a small monomeric cytosolic GTPase that, when bound to GTP, binds to the membranes of cells. |
| estrogen receptor binding | (GO:0030331) | molecular_function | Interacting selectively and non-covalently with an estrogen receptor. |
| cyclin binding | (GO:0030332) | molecular_function | Interacting selectively and non-covalently with cyclins, proteins whose levels in a cell varies markedly during the cell cycle, rising steadily until mitosis, then falling abruptly to zero. As cyclins reach a threshold level, they are thought to drive cells into G2 phase and thus to mitosis. |
| protein phosphatase 2B binding | (GO:0030346) | molecular_function | Interacting selectively and non-covalently with the enzyme protein phosphatase 2B. |
| syntaxin-3 binding | (GO:0030348) | molecular_function | Interacting selectively and non-covalently with the SNAP receptor syntaxin-3. |
| iron-responsive element binding | (GO:0030350) | molecular_function | Interacting selectively and non-covalently with the iron-responsive element, a regulatory sequence found in the 5'- and 3'-untranslated regions of mRNAs encoding many iron-binding proteins. |
| interleukin-17 receptor binding | (GO:0030367) | molecular_function | Interacting selectively and non-covalently with the interleukin-17 receptor. |
| intercellular adhesion molecule-3 receptor binding | (GO:0030370) | molecular_function | Interacting selectively and non-covalently with receptors for intercellular adhesion molecule-3 (ICAM-3), such as DC-SIGN and LFA-1. |
| high molecular weight B cell growth factor receptor binding | (GO:0030372) | molecular_function | Interacting selectively and non-covalently with the high molecular weight B cell growth factor receptor. |
| interleukin-17E receptor binding | (GO:0030380) | molecular_function | Interacting selectively and non-covalently with the interleukin-17E receptor. |
| lactose binding | (GO:0030395) | molecular_function | Interacting selectively and non-covalently with lactose, a disaccharide of glucose and galactose, the carbohydrate of milk. |
| obsolete transcription antiterminator activity | (GO:0030401) | molecular_function | OBSOLETE. Functions to prevent the termination of RNA synthesis. Acts as a regulatory device, e.g. in phage lambda, enabling a terminator to be masked from RNA polymerase so that distal genes can be expressed. This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. |
| growth cone | (GO:0030426) | cellular_component | The migrating motile tip of a growing neuron projection, where actin accumulates, and the actin cytoskeleton is the most dynamic. |
| obsolete muscle fiber | (GO:0030484) | cellular_component | OBSOLETE. The contractile fibers, composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle. This term was made obsolete because a muscle fiber is a cell type rather than a cell component. To update annotations, consider the external ontology term 'muscle cell ; CL:0000187'. |
| hemoglobin binding | (GO:0030492) | molecular_function | Interacting selectively and non-covalently with hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin. |
| ankyrin binding | (GO:0030506) | molecular_function | Interacting selectively and non-covalently with ankyrin, a 200 kDa cytoskeletal protein that attaches other cytoskeletal proteins to integral membrane proteins. |
| spectrin binding | (GO:0030507) | molecular_function | Interacting selectively and non-covalently with spectrin, a protein that is the major constituent of the erythrocyte cytoskeletal network. It associates with band 4.1 (see band protein) and actin to form the cytoskeletal superstructure of the erythrocyte plasma membrane. It is composed of nonhomologous chains, alpha and beta, which aggregate side-to-side in an antiparallel fashion to form dimers, tetramers, and higher polymers. |
| snoRNA binding | (GO:0030515) | molecular_function | Interacting selectively and non-covalently with small nucleolar RNA. |
| snoRNP binding | (GO:0030519) | molecular_function | Interacting selectively and non-covalently with any part of a small nucleolar ribonucleoprotein particle. |
| obsolete transcription regulator activity | (GO:0030528) | molecular_function | OBSOLETE. Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor. This term was obsoleted because it is essentially identical to a Process term (specifically the Biological Process term which has been selected as a term to consider for reannotation), i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. |
| Hsp70 protein binding | (GO:0030544) | molecular_function | Interacting selectively and non-covalently with Hsp70 proteins, any of a group of heat shock proteins around 70kDa in size. |
| receptor regulator activity | (GO:0030545) | molecular_function | The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed. |
| receptor activator activity | (GO:0030546) | molecular_function | The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased. |
| receptor inhibitor activity | (GO:0030547) | molecular_function | The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is decreased. |
| acetylcholine receptor regulator activity | (GO:0030548) | molecular_function | Interacting (directly or indirectly) with acetylcholine receptors such that the proportion of receptors in the active form is changed. |
| acetylcholine receptor activator activity | (GO:0030549) | molecular_function | Interacting (directly or indirectly) with acetylcholine receptors such that the proportion of receptors in the active form is increased. |
| acetylcholine receptor inhibitor activity | (GO:0030550) | molecular_function | Interacting (directly or indirectly) with acetylcholine receptors such that the proportion of receptors in the active form is decreased. |
| cyclic nucleotide binding | (GO:0030551) | molecular_function | Interacting selectively and non-covalently with a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue. |
| cAMP binding | (GO:0030552) | molecular_function | Interacting selectively and non-covalently with cAMP, the nucleotide cyclic AMP (adenosine 3',5'-cyclophosphate). |
| cGMP binding | (GO:0030553) | molecular_function | Interacting selectively and non-covalently with cGMP, the nucleotide cyclic GMP (guanosine 3',5'-cyclophosphate). |
| adenyl nucleotide binding | (GO:0030554) | molecular_function | Interacting selectively and non-covalently with adenyl nucleotides, any compound consisting of adenosine esterified with (ortho)phosphate. |
| U1 snRNA binding | (GO:0030619) | molecular_function | Interacting selectively and non-covalently with the U1 small nuclear RNA (U1 snRNA). |
| U2 snRNA binding | (GO:0030620) | molecular_function | Interacting selectively and non-covalently with the U2 small nuclear RNA (U2 snRNA). |
| U4 snRNA binding | (GO:0030621) | molecular_function | Interacting selectively and non-covalently with the U4 small nuclear RNA (U4 snRNA). |
| U4atac snRNA binding | (GO:0030622) | molecular_function | Interacting selectively and non-covalently with the U4atac small nuclear RNA (U4atac snRNA). |
| U5 snRNA binding | (GO:0030623) | molecular_function | Interacting selectively and non-covalently with the U5 small nuclear RNA (U5 snRNA). |
| U6atac snRNA binding | (GO:0030624) | molecular_function | Interacting selectively and non-covalently with the U6atac small nuclear RNA (U6atac snRNA). |
| U11 snRNA binding | (GO:0030625) | molecular_function | Interacting selectively and non-covalently with the U11 small nuclear RNA (U11 snRNA). |
| U12 snRNA binding | (GO:0030626) | molecular_function | Interacting selectively and non-covalently with the U12 small nuclear RNA (U12 snRNA). |
| pre-mRNA 5'-splice site binding | (GO:0030627) | molecular_function | Interacting selectively and non-covalently with the pre-mRNA 5' splice site sequence. |
| pre-mRNA 3'-splice site binding | (GO:0030628) | molecular_function | Interacting selectively and non-covalently with the pre-mRNA 3' splice site sequence. |
| U6 snRNA 3'-end binding | (GO:0030629) | molecular_function | Interacting selectively and non-covalently with the 3' end of the U6 small nuclear RNA (U6 snRNA). |
| GTP-dependent protein binding | (GO:0030742) | molecular_function | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) when at least one of the interacting partners is in the GTP-bound state. |
| beta-2-microglobulin binding | (GO:0030881) | molecular_function | Interacting selectively and non-covalently with beta-2-microglobulin. |
| lipid antigen binding | (GO:0030882) | molecular_function | Interacting selectively and non-covalently with a lipid antigen. |
| endogenous lipid antigen binding | (GO:0030883) | molecular_function | Interacting selectively and non-covalently with an endogenous cellular lipid antigen. |
| exogenous lipid antigen binding | (GO:0030884) | molecular_function | Interacting selectively and non-covalently with an exogenous lipid antigen (examples include microbial lipids and glycolipids). |
| TPR domain binding | (GO:0030911) | molecular_function | Interacting selectively and non-covalently with a tetratricopeptide repeat (TPR) domain of a protein, the consensus sequence of which is defined by a pattern of small and large hydrophobic amino acids and a structure composed of helices. |
| chloroplast targeting sequence binding | (GO:0030941) | molecular_function | Interacting selectively and non-covalently with a chloroplast targeting sequence, a specific peptide sequence that acts as a signal to localize the protein within the chloroplast. |
| endoplasmic reticulum signal peptide binding | (GO:0030942) | molecular_function | Interacting selectively and non-covalently with an endoplasmic reticulum signal peptide, a specific peptide sequence that acts as a signal to localize the protein within the endoplasmic reticulum. |
| mitochondrion targeting sequence binding | (GO:0030943) | molecular_function | Interacting selectively and non-covalently with a mitochondrion targeting sequence, a specific peptide sequence that acts as a signal to localize the protein within the mitochondrion. |
| DDEL sequence binding | (GO:0030944) | molecular_function | Interacting selectively and non-covalently with a KDEL sequence, the C terminus tetrapeptide sequence Asp-Asp-Glu-Leu found in proteins that are to be retained in the endoplasmic reticulum. |
| potassium ion binding | (GO:0030955) | molecular_function | Interacting selectively and non-covalently with potassium (K+) ions. |
| Tat protein binding | (GO:0030957) | molecular_function | Interacting selectively and non-covalently with Tat, a viral transactivating regulatory protein from the human immunodeficiency virus, or the equivalent protein from another virus. |
| molybdate ion binding | (GO:0030973) | molecular_function | Interacting selectively and non-covalently with molybdate (MoO4 2-) ions. |
| thiamine binding | (GO:0030975) | molecular_function | Interacting selectively and non-covalently with thiamine (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver. |
| thiamine pyrophosphate binding | (GO:0030976) | molecular_function | Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases. |
| taurine binding | (GO:0030977) | molecular_function | Interacting selectively and non-covalently with taurine. |
| mismatched DNA binding | (GO:0030983) | molecular_function | Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches. |
| kininogen binding | (GO:0030984) | molecular_function | Interacting selectively and non-covalently with a kininogen, any of a group of plasma proteins that are kinin precursors. |
| high molecular weight kininogen binding | (GO:0030985) | molecular_function | Interacting selectively and non-covalently with a kininogen of high molecular mass. |
| low molecular weight kininogen binding | (GO:0030986) | molecular_function | Interacting selectively and non-covalently with a kininogen of low molecular mass. |
| high molecular weight kininogen receptor binding | (GO:0030987) | molecular_function | Interacting selectively and non-covalently with a high molecular weight kininogen receptor. |
| filamin binding | (GO:0031005) | molecular_function | Interacting selectively and non-covalently with a filamin, any member of a family of high molecular mass cytoskeletal proteins that crosslink actin filaments to form networks and stress fibers. Filamins contain an amino-terminal alpha-actinin-like actin binding domain, which is followed by a rod-domain composed of 4 to 24 100-residue repetitive segments including a carboxy-terminal dimerization domain. |
| troponin I binding | (GO:0031013) | molecular_function | Interacting selectively and non-covalently with troponin I, the inhibitory subunit of the troponin complex. |
| troponin T binding | (GO:0031014) | molecular_function | Interacting selectively and non-covalently with troponin T, the tropomyosin-binding subunit of the troponin complex. |
| actomyosin structure organization | (GO:0031032) | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures containing both actin and myosin or paramyosin. The myosin may be organized into filaments. |
| myosin filament organization | (GO:0031033) | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a filament composed of myosin molecules. |
| phosphopantetheine binding | (GO:0031177) | molecular_function | Interacting selectively and non-covalently with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate). |
| POZ domain binding | (GO:0031208) | molecular_function | Interacting selectively and non-covalently with a POZ (poxvirus and zinc finger) domain of a protein, a protein-protein interaction domain found in many transcription factors. |
| SCAR complex | (GO:0031209) | cellular_component | A pentameric complex that includes orthologues of human PIR121, Nap1, Abi, SCAR, and HSPC300 and regulates actin polymerization and/or depolymerization through small GTPase mediated signal transduction. |
| phosphatidylcholine binding | (GO:0031210) | molecular_function | Interacting selectively and non-covalently with phosphatidylcholine, a class of glycophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of choline. |
| denatured protein binding | (GO:0031249) | molecular_function | Interacting selectively and non-covalently with denatured proteins. |
| small GTPase binding | (GO:0031267) | molecular_function | Interacting selectively and non-covalently with a small monomeric GTPase. |
| pseudopodium assembly | (GO:0031269) | biological_process | The assembly of a pseudopodium by rearrangement of the actin cytoskeleton and overlying membrane. |
| translation initiation factor binding | (GO:0031369) | molecular_function | Interacting selectively and non-covalently with a translation initiation factor, any polypeptide factor involved in the initiation of ribosome-mediated translation. |
| eukaryotic initiation factor 4G binding | (GO:0031370) | molecular_function | Interacting selectively and non-covalently with eukaryotic initiation factor 4G, a polypeptide factor involved in the initiation of ribosome-mediated translation. |
| sodium ion binding | (GO:0031402) | molecular_function | Interacting selectively and non-covalently with sodium ions (Na+). |
| lithium ion binding | (GO:0031403) | molecular_function | Interacting selectively and non-covalently with lithium ions (Li+). |
| chloride ion binding | (GO:0031404) | molecular_function | Interacting selectively and non-covalently with chloride ions (Cl-). |
| lipoic acid binding | (GO:0031405) | molecular_function | Interacting selectively and non-covalently with lipoic acid, 1,2-dithiolane-3-pentanoic acid. |
| carboxylic acid binding | (GO:0031406) | molecular_function | Interacting selectively and non-covalently with a carboxylic acid, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). |
| pigment binding | (GO:0031409) | molecular_function | Interacting selectively and non-covalently with a pigment, any general or particular coloring matter in living organisms, e.g. melanin. |
| L-ascorbic acid binding | (GO:0031418) | molecular_function | Interacting selectively and non-covalently with L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species. |
| cobalamin binding | (GO:0031419) | molecular_function | Interacting selectively and non-covalently with cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom. |
| alkali metal ion binding | (GO:0031420) | molecular_function | Interacting selectively and non-covalently with any alkali metal ion; alkali metals are those elements in group Ia of the periodic table, with the exception of hydrogen. |
| hexon binding | (GO:0031423) | molecular_function | Interacting selectively and non-covalently with a hexon, the major protein component of the icosahedral capsid of an adenovirus. |
| titin binding | (GO:0031432) | molecular_function | Interacting selectively and non-covalently with titin, any of a family of giant proteins found in striated and smooth muscle. In striated muscle, single titin molecules span half the sarcomere, with their N- and C-termini in the Z-disc and M-line, respectively. |
| telethonin binding | (GO:0031433) | molecular_function | Interacting selectively and non-covalently with telethonin, a protein found in the Z disc of striated muscle and which is a substrate of the titin kinase. |
| mitogen-activated protein kinase kinase binding | (GO:0031434) | molecular_function | Interacting selectively and non-covalently with a mitogen-activated protein kinase kinase, any protein that can phosphorylate a MAP kinase. |
| mitogen-activated protein kinase kinase kinase binding | (GO:0031435) | molecular_function | Interacting selectively and non-covalently with a mitogen-activated protein kinase kinase kinase, any protein that can phosphorylate a MAP kinase kinase. |
| fast-twitch skeletal muscle fiber contraction | (GO:0031443) | biological_process | A process in which force is generated within fast-twitch skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The fast-twitch skeletal muscle is characterized by fast time parameters, high force development and fatiguability. |
| slow-twitch skeletal muscle fiber contraction | (GO:0031444) | biological_process | A process in which force is generated within slow-twitch skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The slow-twitch skeletal muscle is characterized by slow time parameters, low force development and resistance to fatigue. |
| myosin III binding | (GO:0031473) | molecular_function | Interacting selectively and non-covalently with a class III myosin; myosin III is monomeric and has an N terminal kinase domain. |
| myosin VI complex | (GO:0031476) | cellular_component | A myosin complex containing one or more class VI myosin heavy chains and associated light chains. Myosin VI has a single IQ motif in the neck and a tail region with a coiled coil domain followed by a unique globular domain; a unique insertion that enables myosin VI to move towards the pointed or minus end of actin filaments. |
| myosin IX complex | (GO:0031479) | cellular_component | A myosin complex containing a class IX myosin heavy chain and associated light chains. Myosin IX is monomeric with a motor domain containing an N-terminal extension and an insert in the actin binding interface, followed by four to six IQ motifs and a tail region that contains a zinc binding motif and a domain with homology to GTPase activating proteins (GAPs) of the Rho family of G-proteins. |
| myosin V binding | (GO:0031489) | molecular_function | Interacting selectively and non-covalently with a class V myosin; myosin V is a dimeric molecule involved in intracellular transport. |
| chromatin DNA binding | (GO:0031490) | molecular_function | Interacting selectively and non-covalently with DNA that is assembled into chromatin. |
| nucleosome binding | (GO:0031491) | molecular_function | Interacting selectively and non-covalently with a nucleosome, a complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. |
| nucleosomal DNA binding | (GO:0031492) | molecular_function | Interacting selectively and non-covalently with the DNA portion of a nucleosome. |
| nucleosomal histone binding | (GO:0031493) | molecular_function | Interacting selectively and non-covalently with a histone that is assembled into a nucleosome. |
| gonadotropin-releasing hormone receptor binding | (GO:0031530) | molecular_function | Interacting selectively and non-covalently with a receptor for gonadotropin-releasing hormone (GnRH), a peptide hormone that is synthesized and released by the hypothalamus and is responsible for the release of follicle-stimulating hormone (FSH) and luteinizing hormone (LH) from the anterior pituitary. |
| thyrotropin-releasing hormone receptor binding | (GO:0031531) | molecular_function | Interacting selectively and non-covalently with a receptor for thyrotropin-releasing hormone, a tripeptide hormone that is produced by the hypothalamus and stimulates the release of thyroid-stimulating hormone (TSH) and prolactin by the anterior pituitary. |
| brain-derived neurotrophic factor receptor binding | (GO:0031546) | molecular_function | Interacting selectively and non-covalently with the brain-derived neurotrophic factor receptor. |
| polyubiquitin modification-dependent protein binding | (GO:0031593) | molecular_function | Interacting selectively and non-covalently with a protein upon poly-ubiquitination of the target protein. |
| ubiquitin conjugating enzyme binding | (GO:0031624) | molecular_function | Interacting selectively and non-covalently with a ubiquitin conjugating enzyme, any of the E2 proteins. |
| ubiquitin protein ligase binding | (GO:0031625) | molecular_function | Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. |
| beta-endorphin binding | (GO:0031626) | molecular_function | Interacting selectively and non-covalently with beta-endorphin, a peptide generated by the cleavage of pro-opiomelanocortin. |
| opioid receptor binding | (GO:0031628) | molecular_function | Interacting selectively and non-covalently with an opioid receptor. |
| replication fork barrier binding | (GO:0031634) | molecular_function | Interacting selectively and non-covalently with replication fork barriers, sites that inhibit the progress of replication forks. |
| H zone | (GO:0031673) | cellular_component | A relatively pale zone traversing the center of the A band of a sarcomere, visible in relaxed muscle fibers; consists of the central portion of thick (myosin) filaments that are not overlapped by thin (actin) filaments. |
| I band | (GO:0031674) | cellular_component | A region of a sarcomere that appears as a light band on each side of the Z disc, comprising a region of the sarcomere where thin (actin) filaments are not overlapped by thick (myosin) filaments; contains actin, troponin, and tropomyosin; each sarcomere includes half of an I band at each end. |
| G-protein beta-subunit binding | (GO:0031681) | molecular_function | Interacting selectively and non-covalently with a G-protein beta subunit. |
| G-protein gamma-subunit binding | (GO:0031682) | molecular_function | Interacting selectively and non-covalently with a G-protein gamma subunit. |
| G-protein beta/gamma-subunit complex binding | (GO:0031683) | molecular_function | Interacting selectively and non-covalently with a complex of G-protein beta/gamma subunits. |
| adenosine receptor binding | (GO:0031685) | molecular_function | Interacting selectively and non-covalently with an adenosine receptor. |
| A1 adenosine receptor binding | (GO:0031686) | molecular_function | Interacting selectively and non-covalently with an A1 adenosine receptor. |
| A2A adenosine receptor binding | (GO:0031687) | molecular_function | Interacting selectively and non-covalently with an A2A adenosine receptor. |
| A2B adenosine receptor binding | (GO:0031688) | molecular_function | Interacting selectively and non-covalently with an A2B adenosine receptor. |
| A3 adenosine receptor binding | (GO:0031689) | molecular_function | Interacting selectively and non-covalently with an A3 adenosine receptor. |
| adrenergic receptor binding | (GO:0031690) | molecular_function | Interacting selectively and non-covalently with an adrenergic receptor. |
| alpha-1A adrenergic receptor binding | (GO:0031691) | molecular_function | Interacting selectively and non-covalently with an alpha-1A adrenergic receptor. |
| alpha-1B adrenergic receptor binding | (GO:0031692) | molecular_function | Interacting selectively and non-covalently with an alpha-1B adrenergic receptor. |
| alpha-1D adrenergic receptor binding | (GO:0031693) | molecular_function | Interacting selectively and non-covalently with an alpha-1D adrenergic receptor. |
| alpha-2A adrenergic receptor binding | (GO:0031694) | molecular_function | Interacting selectively and non-covalently with an alpha-2A adrenergic receptor. |
| alpha-2B adrenergic receptor binding | (GO:0031695) | molecular_function | Interacting selectively and non-covalently with an alpha-2B adrenergic receptor. |
| alpha-2C adrenergic receptor binding | (GO:0031696) | molecular_function | Interacting selectively and non-covalently with an alpha-2C adrenergic receptor. |
| beta-1 adrenergic receptor binding | (GO:0031697) | molecular_function | Interacting selectively and non-covalently with a beta-1 adrenergic receptor. |
| beta-2 adrenergic receptor binding | (GO:0031698) | molecular_function | Interacting selectively and non-covalently with a beta-2 adrenergic receptor. |
| beta-3 adrenergic receptor binding | (GO:0031699) | molecular_function | Interacting selectively and non-covalently with a beta-3 adrenergic receptor. |
| adrenomedullin receptor binding | (GO:0031700) | molecular_function | Interacting selectively and non-covalently with an adrenomedullin receptor. |
| angiotensin receptor binding | (GO:0031701) | molecular_function | Interacting selectively and non-covalently with an angiotensin receptor. |
| type 1 angiotensin receptor binding | (GO:0031702) | molecular_function | Interacting selectively and non-covalently with a type 1 angiotensin receptor. |
| type 2 angiotensin receptor binding | (GO:0031703) | molecular_function | Interacting selectively and non-covalently with a type 2 angiotensin receptor. |
| bombesin receptor binding | (GO:0031705) | molecular_function | Interacting selectively and non-covalently with a bombesin receptor. |
| subtype 3 bombesin receptor binding | (GO:0031706) | molecular_function | Interacting selectively and non-covalently with a subtype 3 bombesin receptor. |
| endothelin A receptor binding | (GO:0031707) | molecular_function | Interacting selectively and non-covalently with an endothelin A receptor. |
| endothelin B receptor binding | (GO:0031708) | molecular_function | Interacting selectively and non-covalently with an endothelin B receptor. |
| gastrin-releasing peptide receptor binding | (GO:0031709) | molecular_function | Interacting selectively and non-covalently with a gastrin-releasing peptide receptor. |
| neuromedin B receptor binding | (GO:0031710) | molecular_function | Interacting selectively and non-covalently with a neuromedin B receptor. |
| bradykinin receptor binding | (GO:0031711) | molecular_function | Interacting selectively and non-covalently with a bradykinin receptor. |
| B1 bradykinin receptor binding | (GO:0031712) | molecular_function | Interacting selectively and non-covalently with a B1 bradykinin receptor. |
| B2 bradykinin receptor binding | (GO:0031713) | molecular_function | Interacting selectively and non-covalently with a B2 bradykinin receptor. |
| C5a anaphylatoxin chemotactic receptor binding | (GO:0031714) | molecular_function | Interacting selectively and non-covalently with a C5a anaphylatoxin chemotactic receptor. |
| C5L2 anaphylatoxin chemotactic receptor binding | (GO:0031715) | molecular_function | Interacting selectively and non-covalently with a C5L2 anaphylatoxin chemotactic receptor. |
| calcitonin receptor binding | (GO:0031716) | molecular_function | Interacting selectively and non-covalently with a calcitonin receptor. |
| cannabinoid receptor binding | (GO:0031717) | molecular_function | Interacting selectively and non-covalently with a cannabinoid receptor. |
| type 1 cannabinoid receptor binding | (GO:0031718) | molecular_function | Interacting selectively and non-covalently with a type 1 cannabinoid receptor. |
| type 2 cannabinoid receptor binding | (GO:0031719) | molecular_function | Interacting selectively and non-covalently with a type 2 cannabinoid receptor. |
| haptoglobin binding | (GO:0031720) | molecular_function | Interacting selectively and non-covalently with a haptoglobin, any alpha2 globulin of blood plasma that can combine with free oxyhemoglobin to form a stable complex. |
| hemoglobin alpha binding | (GO:0031721) | molecular_function | Interacting selectively and non-covalently with a hemoglobin alpha chain. |
| hemoglobin beta binding | (GO:0031722) | molecular_function | Interacting selectively and non-covalently with a hemoglobin beta chain. |
| CXCR4 chemokine receptor binding | (GO:0031723) | molecular_function | Interacting selectively and non-covalently with a CXCR4 chemokine receptor. |
| CXCR5 chemokine receptor binding | (GO:0031724) | molecular_function | Interacting selectively and non-covalently with a CXCR5 chemokine receptor. |
| CXCR6 chemokine receptor binding | (GO:0031725) | molecular_function | Interacting selectively and non-covalently with a CXCR6 chemokine receptor. |
| CCR1 chemokine receptor binding | (GO:0031726) | molecular_function | Interacting selectively and non-covalently with a CCR1 chemokine receptor. |
| CCR2 chemokine receptor binding | (GO:0031727) | molecular_function | Interacting selectively and non-covalently with a CCR2 chemokine receptor. |
| CCR3 chemokine receptor binding | (GO:0031728) | molecular_function | Interacting selectively and non-covalently with a CCR3 chemokine receptor. |
| CCR4 chemokine receptor binding | (GO:0031729) | molecular_function | Interacting selectively and non-covalently with a CCR4 chemokine receptor. |
| CCR5 chemokine receptor binding | (GO:0031730) | molecular_function | Interacting selectively and non-covalently with a CCR5 chemokine receptor. |
| CCR6 chemokine receptor binding | (GO:0031731) | molecular_function | Interacting selectively and non-covalently with a CCR6 chemokine receptor. |
| CCR7 chemokine receptor binding | (GO:0031732) | molecular_function | Interacting selectively and non-covalently with a CCR7 chemokine receptor. |
| CCR8 chemokine receptor binding | (GO:0031733) | molecular_function | Interacting selectively and non-covalently with a CCR8 chemokine receptor. |
| CCR9 chemokine receptor binding | (GO:0031734) | molecular_function | Interacting selectively and non-covalently with a CCR9 chemokine receptor. |
| CCR10 chemokine receptor binding | (GO:0031735) | molecular_function | Interacting selectively and non-covalently with a CCR10 chemokine receptor. |
| CCR11 chemokine receptor binding | (GO:0031736) | molecular_function | Interacting selectively and non-covalently with a CCR11 chemokine receptor. |
| CX3C chemokine receptor binding | (GO:0031737) | molecular_function | Interacting selectively and non-covalently with a CX3C chemokine receptor. |
| cholecystokinin receptor binding | (GO:0031739) | molecular_function | Interacting selectively and non-covalently with a cholecystokinin receptor. |
| type A cholecystokinin receptor binding | (GO:0031740) | molecular_function | Interacting selectively and non-covalently with a type A cholecystokinin receptor. |
| type B gastrin/cholecystokinin receptor binding | (GO:0031741) | molecular_function | Interacting selectively and non-covalently with a type B gastrin/cholecystokinin receptor. |
| cysteinyl leukotriene receptor binding | (GO:0031745) | molecular_function | Interacting selectively and non-covalently with a cysteinyl leukotriene receptor. |
| type 1 cysteinyl leukotriene receptor binding | (GO:0031746) | molecular_function | Interacting selectively and non-covalently with a type 1 cysteinyl leukotriene receptor. |
| type 2 cysteinyl leukotriene receptor binding | (GO:0031747) | molecular_function | Interacting selectively and non-covalently with a type 2 cysteinyl leukotriene receptor. |
| D1 dopamine receptor binding | (GO:0031748) | molecular_function | Interacting selectively and non-covalently with a D1 dopamine receptor. |
| D2 dopamine receptor binding | (GO:0031749) | molecular_function | Interacting selectively and non-covalently with a D2 dopamine receptor. |
| D3 dopamine receptor binding | (GO:0031750) | molecular_function | Interacting selectively and non-covalently with a D3 dopamine receptor. |
| D4 dopamine receptor binding | (GO:0031751) | molecular_function | Interacting selectively and non-covalently with a D4 dopamine receptor. |
| D5 dopamine receptor binding | (GO:0031752) | molecular_function | Interacting selectively and non-covalently with a D5 dopamine receptor. |
| endothelial differentiation G protein-coupled receptor binding | (GO:0031753) | molecular_function | Interacting selectively and non-covalently with an endothelial differentiation G protein-coupled receptor. |
| Edg-1 sphingosine 1-phosphate receptor binding | (GO:0031754) | molecular_function | Interacting selectively and non-covalently with an Edg-1 sphingosine 1-phosphate receptor. |
| Edg-2 lysophosphatidic acid receptor binding | (GO:0031755) | molecular_function | Interacting selectively and non-covalently with an Edg-2 lysophosphatidic acid receptor. |
| Edg-3 sphingosine 1-phosphate receptor binding | (GO:0031756) | molecular_function | Interacting selectively and non-covalently with an Edg-3 sphingosine 1-phosphate receptor. |
| Edg-4 lysophosphatidic acid receptor binding | (GO:0031757) | molecular_function | Interacting selectively and non-covalently with an Edg-4 lysophosphatidic acid receptor. |
| Edg-5 sphingosine 1-phosphate receptor binding | (GO:0031758) | molecular_function | Interacting selectively and non-covalently with an Edg-5 sphingosine 1-phosphate receptor. |
| Edg-6 sphingosine 1-phosphate receptor binding | (GO:0031759) | molecular_function | Interacting selectively and non-covalently with an Edg-6 sphingosine 1-phosphate receptor. |
| Edg-7 lysophosphatidic acid receptor binding | (GO:0031760) | molecular_function | Interacting selectively and non-covalently with an Edg-7 lysophosphatidic acid receptor. |
| fMet-Leu-Phe receptor binding | (GO:0031761) | molecular_function | Interacting selectively and non-covalently with a fMet-Leu-Phe receptor. |
| follicle-stimulating hormone receptor binding | (GO:0031762) | molecular_function | Interacting selectively and non-covalently with a follicle-stimulating hormone receptor. |
| galanin receptor binding | (GO:0031763) | molecular_function | Interacting selectively and non-covalently with a galanin receptor. |
| type 1 galanin receptor binding | (GO:0031764) | molecular_function | Interacting selectively and non-covalently with a type 1 galanin receptor. |
| type 2 galanin receptor binding | (GO:0031765) | molecular_function | Interacting selectively and non-covalently with a type 2 galanin receptor. |
| type 3 galanin receptor binding | (GO:0031766) | molecular_function | Interacting selectively and non-covalently with a type 3 galanin receptor. |
| gastric inhibitory polypeptide receptor binding | (GO:0031767) | molecular_function | Interacting selectively and non-covalently with a gastric inhibitory polypeptide receptor. |
| ghrelin receptor binding | (GO:0031768) | molecular_function | Interacting selectively and non-covalently with a ghrelin receptor. |
| glucagon receptor binding | (GO:0031769) | molecular_function | Interacting selectively and non-covalently with a glucagon receptor. |
| growth hormone-releasing hormone receptor binding | (GO:0031770) | molecular_function | Interacting selectively and non-covalently with a growth hormone-releasing hormone receptor. |
| type 1 hypocretin receptor binding | (GO:0031771) | molecular_function | Interacting selectively and non-covalently with a type 1 hypocretin receptor. |
| type 2 hypocretin receptor binding | (GO:0031772) | molecular_function | Interacting selectively and non-covalently with a type 2 hypocretin receptor. |
| kisspeptin receptor binding | (GO:0031773) | molecular_function | Interacting selectively and non-covalently with a kisspeptin receptor. |
| leukotriene receptor binding | (GO:0031774) | molecular_function | Interacting selectively and non-covalently with a leukotriene receptor. |
| lutropin-choriogonadotropic hormone receptor binding | (GO:0031775) | molecular_function | Interacting selectively and non-covalently with a lutropin-choriogonadotropic hormone receptor. |
| melanin-concentrating hormone receptor binding | (GO:0031776) | molecular_function | Interacting selectively and non-covalently with a melanin-concentrating hormone receptor. |
| type 1 melanin-concentrating hormone receptor binding | (GO:0031777) | molecular_function | Interacting selectively and non-covalently with a type 1 melanin-concentrating hormone receptor. |
| type 2 melanin-concentrating hormone receptor binding | (GO:0031778) | molecular_function | Interacting selectively and non-covalently with a type 2 melanin-concentrating hormone receptor. |
| melanocortin receptor binding | (GO:0031779) | molecular_function | Interacting selectively and non-covalently with a melanocortin receptor. |
| corticotropin hormone receptor binding | (GO:0031780) | molecular_function | Interacting selectively and non-covalently with a corticotropin hormone receptor. |
| type 3 melanocortin receptor binding | (GO:0031781) | molecular_function | Interacting selectively and non-covalently with a type 3 melanocortin receptor. |
| type 4 melanocortin receptor binding | (GO:0031782) | molecular_function | Interacting selectively and non-covalently with a type 4 melanocortin receptor. |
| type 5 melanocortin receptor binding | (GO:0031783) | molecular_function | Interacting selectively and non-covalently with a type 5 melanocortin receptor. |
| melatonin receptor binding | (GO:0031784) | molecular_function | Interacting selectively and non-covalently with a melatonin receptor. |
| type 1A melatonin receptor binding | (GO:0031785) | molecular_function | Interacting selectively and non-covalently with a type 1A melatonin receptor. |
| type 1B melatonin receptor binding | (GO:0031786) | molecular_function | Interacting selectively and non-covalently with a type 1B melatonin receptor. |
| H9 melatonin receptor binding | (GO:0031787) | molecular_function | Interacting selectively and non-covalently with a H9 melatonin receptor. |
| motilin receptor binding | (GO:0031788) | molecular_function | Interacting selectively and non-covalently with a motilin receptor. |
| G protein-coupled acetylcholine receptor binding | (GO:0031789) | molecular_function | Interacting selectively and non-covalently with a G protein-coupled acetylcholine receptor. |
| G protein-coupled GABA receptor binding | (GO:0031795) | molecular_function | Interacting selectively and non-covalently with a G protein-coupled (metabotropic) GABA receptor. |
| type 1 metabotropic GABA receptor binding | (GO:0031796) | molecular_function | Interacting selectively and non-covalently with a type 1 metabotropic GABA receptor. |
| type 2 metabotropic GABA receptor binding | (GO:0031797) | molecular_function | Interacting selectively and non-covalently with a type 2 metabotropic GABA receptor. |
| type 1 metabotropic glutamate receptor binding | (GO:0031798) | molecular_function | Interacting selectively and non-covalently with a type 1 metabotropic glutamate receptor. |
| type 2 metabotropic glutamate receptor binding | (GO:0031799) | molecular_function | Interacting selectively and non-covalently with a type 2 metabotropic glutamate receptor. |
| type 3 metabotropic glutamate receptor binding | (GO:0031800) | molecular_function | Interacting selectively and non-covalently with a type 3 metabotropic glutamate receptor. |
| type 4 metabotropic glutamate receptor binding | (GO:0031801) | molecular_function | Interacting selectively and non-covalently with a type 4 metabotropic glutamate receptor. |
| type 5 metabotropic glutamate receptor binding | (GO:0031802) | molecular_function | Interacting selectively and non-covalently with a type 5 metabotropic glutamate receptor. |
| type 6 metabotropic glutamate receptor binding | (GO:0031803) | molecular_function | Interacting selectively and non-covalently with a type 6 metabotropic glutamate receptor. |
| type 7 metabotropic glutamate receptor binding | (GO:0031804) | molecular_function | Interacting selectively and non-covalently with a type 7 metabotropic glutamate receptor. |
| type 8 metabotropic glutamate receptor binding | (GO:0031805) | molecular_function | Interacting selectively and non-covalently with a type 8 metabotropic glutamate receptor. |
| G protein-coupled histamine receptor binding | (GO:0031806) | molecular_function | Interacting selectively and non-covalently with a G protein-coupled (metabotropic) histamine receptor. |
| H1 histamine receptor binding | (GO:0031807) | molecular_function | Interacting selectively and non-covalently with a H1 histamine receptor. |
| H2 histamine receptor binding | (GO:0031808) | molecular_function | Interacting selectively and non-covalently with a H2 histamine receptor. |
| H3 histamine receptor binding | (GO:0031809) | molecular_function | Interacting selectively and non-covalently with a H3 histamine receptor. |
| H4 histamine receptor binding | (GO:0031810) | molecular_function | Interacting selectively and non-covalently with a H4 histamine receptor. |
| G protein-coupled nucleotide receptor binding | (GO:0031811) | molecular_function | Interacting selectively and non-covalently with a G protein-coupled (metabotropic) nucleotide receptor. |
| P2Y1 nucleotide receptor binding | (GO:0031812) | molecular_function | Interacting selectively and non-covalently with a P2Y1 nucleotide receptor. |
| P2Y2 nucleotide receptor binding | (GO:0031813) | molecular_function | Interacting selectively and non-covalently with a P2Y2 nucleotide receptor. |
| P2Y4 nucleotide receptor binding | (GO:0031814) | molecular_function | Interacting selectively and non-covalently with a P2Y4 nucleotide receptor. |
| P2Y5 nucleotide receptor binding | (GO:0031815) | molecular_function | Interacting selectively and non-covalently with a P2Y5 nucleotide receptor. |
| P2Y6 nucleotide receptor binding | (GO:0031816) | molecular_function | Interacting selectively and non-covalently with a P2Y6 nucleotide receptor. |
| P2Y8 nucleotide receptor binding | (GO:0031817) | molecular_function | Interacting selectively and non-covalently with a P2Y8 nucleotide receptor. |
| P2Y9 nucleotide receptor binding | (GO:0031818) | molecular_function | Interacting selectively and non-covalently with a P2Y9 nucleotide receptor. |
| P2Y10 nucleotide receptor binding | (GO:0031819) | molecular_function | Interacting selectively and non-covalently with a P2Y10 nucleotide receptor. |
| P2Y11 nucleotide receptor binding | (GO:0031820) | molecular_function | Interacting selectively and non-covalently with a P2Y11 nucleotide receptor. |
| G protein-coupled serotonin receptor binding | (GO:0031821) | molecular_function | Interacting selectively and non-covalently with a metabotropic serotonin receptor. |
| type 1B serotonin receptor binding | (GO:0031822) | molecular_function | Interacting selectively and non-covalently with a type 1B serotonin receptor. |
| type 1D serotonin receptor binding | (GO:0031823) | molecular_function | Interacting selectively and non-covalently with a type 1D serotonin receptor. |
| type 1E serotonin receptor binding | (GO:0031824) | molecular_function | Interacting selectively and non-covalently with a type 1E serotonin receptor. |
| type 1F serotonin receptor binding | (GO:0031825) | molecular_function | Interacting selectively and non-covalently with a type 1F serotonin receptor. |
| type 2A serotonin receptor binding | (GO:0031826) | molecular_function | Interacting selectively and non-covalently with a type 2A serotonin receptor. |
| type 2B serotonin receptor binding | (GO:0031827) | molecular_function | Interacting selectively and non-covalently with a type 2B serotonin receptor. |
| type 2C serotonin receptor binding | (GO:0031828) | molecular_function | Interacting selectively and non-covalently with a type 2C serotonin receptor. |
| type 4 serotonin receptor binding | (GO:0031829) | molecular_function | Interacting selectively and non-covalently with a type 4 serotonin receptor. |
| type 5A serotonin receptor binding | (GO:0031830) | molecular_function | Interacting selectively and non-covalently with a type 5A serotonin receptor. |
| type 5B serotonin receptor binding | (GO:0031831) | molecular_function | Interacting selectively and non-covalently with a type 5B serotonin receptor. |
| type 6 serotonin receptor binding | (GO:0031832) | molecular_function | Interacting selectively and non-covalently with a type 6 serotonin receptor. |
| type 7 serotonin receptor binding | (GO:0031833) | molecular_function | Interacting selectively and non-covalently with a type 7 serotonin receptor. |
| neurokinin receptor binding | (GO:0031834) | molecular_function | Interacting selectively and non-covalently with a neurokinin receptor. |
| substance P receptor binding | (GO:0031835) | molecular_function | Interacting selectively and non-covalently with a substance P receptor. |
| neuromedin K receptor binding | (GO:0031836) | molecular_function | Interacting selectively and non-covalently with a neuromedin K receptor. |
| substance K receptor binding | (GO:0031837) | molecular_function | Interacting selectively and non-covalently with a substance K receptor. |
| type 1 neuromedin U receptor binding | (GO:0031839) | molecular_function | Interacting selectively and non-covalently with a type 1 neuromedin U receptor. |
| type 2 neuromedin U receptor binding | (GO:0031840) | molecular_function | Interacting selectively and non-covalently with a type 2 neuromedin U receptor. |
| neuropeptide Y receptor binding | (GO:0031841) | molecular_function | Interacting selectively and non-covalently with a neuropeptide Y receptor. |
| type 1 neuropeptide Y receptor binding | (GO:0031842) | molecular_function | Interacting selectively and non-covalently with a type 1 neuropeptide Y receptor. |
| type 2 neuropeptide Y receptor binding | (GO:0031843) | molecular_function | Interacting selectively and non-covalently with a type 2 neuropeptide Y receptor. |
| type 4 neuropeptide Y receptor binding | (GO:0031844) | molecular_function | Interacting selectively and non-covalently with a type 4 neuropeptide Y receptor. |
| type 5 neuropeptide Y receptor binding | (GO:0031845) | molecular_function | Interacting selectively and non-covalently with a type 5 neuropeptide Y receptor. |
| neurotensin receptor binding | (GO:0031846) | molecular_function | Interacting selectively and non-covalently with a neurotensin receptor. |
| type 1 neurotensin receptor binding | (GO:0031847) | molecular_function | Interacting selectively and non-covalently with a type 1 neurotensin receptor. |
| olfactory receptor binding | (GO:0031849) | molecular_function | Interacting selectively and non-covalently with an olfactory receptor. |
| delta-type opioid receptor binding | (GO:0031850) | molecular_function | Interacting selectively and non-covalently with a delta-type opioid receptor. |
| kappa-type opioid receptor binding | (GO:0031851) | molecular_function | Interacting selectively and non-covalently with a kappa-type opioid receptor. |
| mu-type opioid receptor binding | (GO:0031852) | molecular_function | Interacting selectively and non-covalently with a mu-type opioid receptor. |
| nociceptin receptor binding | (GO:0031853) | molecular_function | Interacting selectively and non-covalently with a nociceptin receptor. |
| orexigenic neuropeptide QRFP receptor binding | (GO:0031854) | molecular_function | Interacting selectively and non-covalently with an orexigenic neuropeptide QRFP receptor. |
| oxytocin receptor binding | (GO:0031855) | molecular_function | Interacting selectively and non-covalently with an oxytocin receptor. |
| parathyroid hormone receptor binding | (GO:0031856) | molecular_function | Interacting selectively and non-covalently with a parathyroid hormone receptor. |
| type 1 parathyroid hormone receptor binding | (GO:0031857) | molecular_function | Interacting selectively and non-covalently with a type 1 parathyroid hormone receptor. |
| pituitary adenylate cyclase-activating polypeptide receptor binding | (GO:0031858) | molecular_function | Interacting selectively and non-covalently with a pituitary adenylate cyclase-activating polypeptide receptor. |
| platelet activating factor receptor binding | (GO:0031859) | molecular_function | Interacting selectively and non-covalently with a platelet activating factor receptor. |
| prostanoid receptor binding | (GO:0031862) | molecular_function | Interacting selectively and non-covalently with a prostanoid receptor. |
| prostaglandin D2 receptor binding | (GO:0031863) | molecular_function | Interacting selectively and non-covalently with a prostaglandin D2 receptor. |
| EP1 subtype prostaglandin E2 receptor binding | (GO:0031864) | molecular_function | Interacting selectively and non-covalently with an EP1 subtype prostaglandin E2 receptor. |
| EP2 subtype prostaglandin E2 receptor binding | (GO:0031865) | molecular_function | Interacting selectively and non-covalently with an EP2 subtype prostaglandin E2 receptor. |
| EP3 subtype prostaglandin E2 receptor binding | (GO:0031866) | molecular_function | Interacting selectively and non-covalently with an EP3 subtype prostaglandin E2 receptor. |
| EP4 subtype prostaglandin E2 receptor binding | (GO:0031867) | molecular_function | Interacting selectively and non-covalently with an EP4 subtype prostaglandin E2 receptor. |
| prostaglandin F2-alpha receptor binding | (GO:0031868) | molecular_function | Interacting selectively and non-covalently with a prostaglandin F2-alpha receptor. |
| prostacyclin receptor binding | (GO:0031869) | molecular_function | Interacting selectively and non-covalently with a prostacyclin receptor. |
| thromboxane A2 receptor binding | (GO:0031870) | molecular_function | Interacting selectively and non-covalently with a thromboxane A2 receptor. |
| proteinase activated receptor binding | (GO:0031871) | molecular_function | Interacting selectively and non-covalently with a proteinase activated receptor. |
| type 1 proteinase activated receptor binding | (GO:0031872) | molecular_function | Interacting selectively and non-covalently with a type 1 proteinase activated receptor. |
| type 2 proteinase activated receptor binding | (GO:0031873) | molecular_function | Interacting selectively and non-covalently with a type 2 proteinase activated receptor. |
| type 3 proteinase activated receptor binding | (GO:0031874) | molecular_function | Interacting selectively and non-covalently with a type 3 proteinase activated receptor. |
| type 4 proteinase activated receptor binding | (GO:0031875) | molecular_function | Interacting selectively and non-covalently with a type 4 proteinase activated receptor. |
| secretin receptor binding | (GO:0031876) | molecular_function | Interacting selectively and non-covalently with a secretin receptor. |
| somatostatin receptor binding | (GO:0031877) | molecular_function | Interacting selectively and non-covalently with a somatostatin receptor. |
| type 1 somatostatin receptor binding | (GO:0031878) | molecular_function | Interacting selectively and non-covalently with a type 1 somatostatin receptor. |
| type 2 somatostatin receptor binding | (GO:0031879) | molecular_function | Interacting selectively and non-covalently with a type 2 somatostatin receptor. |
| type 3 somatostatin receptor binding | (GO:0031880) | molecular_function | Interacting selectively and non-covalently with a type 3 somatostatin receptor. |
| type 4 somatostatin receptor binding | (GO:0031881) | molecular_function | Interacting selectively and non-covalently with a type 4 somatostatin receptor. |
| type 5 somatostatin receptor binding | (GO:0031882) | molecular_function | Interacting selectively and non-covalently with a type 5 somatostatin receptor. |
| taste receptor binding | (GO:0031883) | molecular_function | Interacting selectively and non-covalently with a taste receptor. |
| type 1 member 1 taste receptor binding | (GO:0031884) | molecular_function | Interacting selectively and non-covalently with a type 1 member 1 taste receptor. |
| type 1 member 2 taste receptor binding | (GO:0031885) | molecular_function | Interacting selectively and non-covalently with a type 1 member 2 taste receptor. |
| type 1 member 3 taste receptor binding | (GO:0031886) | molecular_function | Interacting selectively and non-covalently with a type 1 member 3 taste receptor. |
| urotensin receptor binding | (GO:0031889) | molecular_function | Interacting selectively and non-covalently with a urotensin receptor. |
| vasoactive intestinal polypeptide receptor binding | (GO:0031890) | molecular_function | Interacting selectively and non-covalently with a vasoactive intestinal polypeptide receptor. |
| type 1 vasoactive intestinal polypeptide receptor binding | (GO:0031891) | molecular_function | Interacting selectively and non-covalently with a type 1 vasoactive intestinal polypeptide receptor. |
| type 2 vasoactive intestinal polypeptide receptor binding | (GO:0031892) | molecular_function | Interacting selectively and non-covalently with a type 2 vasoactive intestinal polypeptide receptor. |
| vasopressin receptor binding | (GO:0031893) | molecular_function | Interacting selectively and non-covalently with a vasopressin receptor. |
| V1A vasopressin receptor binding | (GO:0031894) | molecular_function | Interacting selectively and non-covalently with a V1A vasopressin receptor. |
| V1B vasopressin receptor binding | (GO:0031895) | molecular_function | Interacting selectively and non-covalently with a V1B vasopressin receptor. |
| V2 vasopressin receptor binding | (GO:0031896) | molecular_function | Interacting selectively and non-covalently with a V2 vasopressin receptor. |
| cortisol receptor binding | (GO:0031961) | molecular_function | Interacting selectively and non-covalently with a cortisol receptor. |
| mineralocorticoid receptor binding | (GO:0031962) | molecular_function | Interacting selectively and non-covalently with a mineralocorticoid receptor. |
| insulin-like growth factor I binding | (GO:0031994) | molecular_function | Interacting selectively and non-covalently with insulin-like growth factor I. |
| insulin-like growth factor II binding | (GO:0031995) | molecular_function | Interacting selectively and non-covalently with insulin-like growth factor II. |
| thioesterase binding | (GO:0031996) | molecular_function | Interacting selectively and non-covalently with any thioesterase enzyme. |
| N-terminal myristoylation domain binding | (GO:0031997) | molecular_function | Interacting selectively and non-covalently with the N-terminus of a protein that has the potential to be, or has been, modified by N-terminal myristoylation. Binding affinity is typically altered by myristoylation; for example, N-terminal myristoylation of HIV Nef increases its affinity for calmodulin. |
| interleukin-28 receptor binding | (GO:0032003) | molecular_function | Interacting selectively and non-covalently with the interleukin-28 receptor. |
| myosin light chain binding | (GO:0032027) | molecular_function | Interacting selectively and non-covalently with a light chain of a myosin complex. |
| myosin head/neck binding | (GO:0032028) | molecular_function | Interacting selectively and non-covalently with the head/neck region of a myosin heavy chain. |
| myosin tail binding | (GO:0032029) | molecular_function | Interacting selectively and non-covalently with the tail region of a myosin heavy chain. |
| myosin I light chain binding | (GO:0032030) | molecular_function | Interacting selectively and non-covalently with a light chain of a myosin I complex. |
| myosin I head/neck binding | (GO:0032031) | molecular_function | Interacting selectively and non-covalently with the head/neck region of a myosin I heavy chain. |
| myosin I tail binding | (GO:0032032) | molecular_function | Interacting selectively and non-covalently with the tail region of a myosin I heavy chain. |
| myosin II light chain binding | (GO:0032033) | molecular_function | Interacting selectively and non-covalently with a light chain of a myosin II complex. |
| myosin II head/neck binding | (GO:0032034) | molecular_function | Interacting selectively and non-covalently with the head/neck region of a myosin II heavy chain. |
| myosin II tail binding | (GO:0032035) | molecular_function | Interacting selectively and non-covalently with the tail region of a myosin II heavy chain. |
| myosin heavy chain binding | (GO:0032036) | molecular_function | Interacting selectively and non-covalently with a heavy chain of a myosin complex. |
| myosin I heavy chain binding | (GO:0032037) | molecular_function | Interacting selectively and non-covalently with a heavy chain of a myosin I complex. |
| myosin II heavy chain binding | (GO:0032038) | molecular_function | Interacting selectively and non-covalently with a heavy chain of a myosin II complex. |
| clathrin heavy chain binding | (GO:0032050) | molecular_function | Interacting selectively and non-covalently with a clathrin heavy chain. |
| clathrin light chain binding | (GO:0032051) | molecular_function | Interacting selectively and non-covalently with a clathrin light chain. |
| bile acid binding | (GO:0032052) | molecular_function | Interacting selectively and non-covalently with bile acids, any of a group of steroid carboxylic acids occurring in bile. |
| NACHT domain binding | (GO:0032089) | molecular_function | Interacting selectively and non-covalently with a NACHT (NAIP, CIITA, HET-E and TP1) domain. The NACHT domain consists of seven distinct conserved motifs, including an ATP/GTPase specific P-loop, a Mg(2+)-binding site and five more specific motifs. |
| Pyrin domain binding | (GO:0032090) | molecular_function | Interacting selectively and non-covalently with a Pyrin (PAAD/DAPIN) domain, a protein-protein interaction domain that has the same fold as the Death domain. |
| SAM domain binding | (GO:0032093) | molecular_function | Interacting selectively and non-covalently with a SAM (Sterile Alpha Motif) domain, which is a 70-amino acid protein sequence that participates in protein-protein, protein-lipid, and protein-RNA interactions and is conserved from lower to higher eukaryotes. |
| alkylated DNA binding | (GO:0032131) | molecular_function | Interacting selectively and non-covalently with alkylated residues in DNA. |
| O6-alkylguanine-DNA binding | (GO:0032132) | molecular_function | Interacting selectively and non-covalently with O6-alkylguanine adducts in DNA. |
| DNA insertion or deletion binding | (GO:0032135) | molecular_function | Interacting selectively and non-covalently with double-stranded DNA containing insertions or deletions. |
| adenine/cytosine mispair binding | (GO:0032136) | molecular_function | Interacting selectively and non-covalently with double-stranded DNA containing an A/C mispair. |
| guanine/thymine mispair binding | (GO:0032137) | molecular_function | Interacting selectively and non-covalently with double-stranded DNA containing a G/T mispair. |
| single base insertion or deletion binding | (GO:0032138) | molecular_function | Interacting selectively and non-covalently with double-stranded DNA containing a single base insertion or deletion. |
| dinucleotide insertion or deletion binding | (GO:0032139) | molecular_function | Interacting selectively and non-covalently with double-stranded DNA containing a dinucleotide insertion or deletion. |
| single adenine insertion binding | (GO:0032140) | molecular_function | Interacting selectively and non-covalently with double-stranded DNA containing a single adenine insertion or a deletion that results in an unpaired adenine. |
| single cytosine insertion binding | (GO:0032141) | molecular_function | Interacting selectively and non-covalently with double-stranded DNA containing a single cytosine insertion or a deletion that results in an unpaired cytosine. |
| single guanine insertion binding | (GO:0032142) | molecular_function | Interacting selectively and non-covalently with double-stranded DNA containing a single guanine insertion or a deletion that results in an unpaired guanine. |
| single thymine insertion binding | (GO:0032143) | molecular_function | Interacting selectively and non-covalently with double-stranded DNA containing a single thymine insertion or a deletion that results in an unpaired thymine. |
| succinate-semialdehyde dehydrogenase binding | (GO:0032145) | molecular_function | Interacting selectively and non-covalently with succinate-semialdehyde dehydrogenase. |
| prospore contractile ring | (GO:0032157) | cellular_component | A contractile ring, i.e. a cytoskeletal structure composed of actin filaments and myosin, that forms beneath the plasma membrane of the prospore envelope in meiotic cells in preparation for completing cytokinesis. |
| dinucleotide repeat insertion binding | (GO:0032181) | molecular_function | Interacting selectively and non-covalently with double-stranded DNA containing a dinucleotide repeat insertion or a deletion resulting in unpaired dinucleotide repeats. |
| ubiquitin-like protein binding | (GO:0032182) | molecular_function | Interacting selectively and non-covalently with a small conjugating protein such as ubiquitin or a ubiquitin-like protein. |
| SUMO binding | (GO:0032183) | molecular_function | Interacting selectively and non-covalently with the small ubiquitin-like protein SUMO. |
| SUMO polymer binding | (GO:0032184) | molecular_function | Interacting selectively and non-covalently with a polymer of the small ubiquitin-like protein SUMO. |
| acrosin binding | (GO:0032190) | molecular_function | Interacting selectively and non-covalently with acrosin, a protein that is found in the acrosomes of sperm and possesses protease and carbohydrate binding activities. |
| phosphatidylinositol-3-phosphate binding | (GO:0032266) | molecular_function | Interacting selectively and non-covalently with phosphatidylinositol-3-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3' position. |
| oxidized DNA binding | (GO:0032356) | molecular_function | Interacting selectively and non-covalently with oxidized residues in DNA. |
| oxidized purine DNA binding | (GO:0032357) | molecular_function | Interacting selectively and non-covalently with oxidized purine residues in DNA. |
| oxidized pyrimidine DNA binding | (GO:0032358) | molecular_function | Interacting selectively and non-covalently with oxidized pyrimidine residues in DNA. |
| HECT domain binding | (GO:0032399) | molecular_function | Interacting selectively and non-covalently with a HECT, 'Homologous to the E6-AP Carboxyl Terminus', domain of a protein. |
| mismatch repair complex binding | (GO:0032404) | molecular_function | Interacting selectively and non-covalently with a mismatch repair complex. |
| MutLalpha complex binding | (GO:0032405) | molecular_function | Interacting selectively and non-covalently with the mismatch repair complex MutLalpha. |
| MutLbeta complex binding | (GO:0032406) | molecular_function | Interacting selectively and non-covalently with the mismatch repair complex MutLbeta. |
| MutSalpha complex binding | (GO:0032407) | molecular_function | Interacting selectively and non-covalently with the mismatch repair complex MutSalpha. |
| MutSbeta complex binding | (GO:0032408) | molecular_function | Interacting selectively and non-covalently with the mismatch repair complex MutSbeta. |
| stereocilium | (GO:0032420) | cellular_component | An actin-based protrusion from the apical surface of auditory and vestibular hair cells and of neuromast cells. These protrusions are supported by a bundle of cross-linked actin filaments (an actin cable), oriented such that the plus (barbed) ends are at the tip of the protrusion, capped by a tip complex which bridges to the plasma. Bundles of stereocilia act as mechanosensory organelles. |
| purine-rich negative regulatory element binding | (GO:0032422) | molecular_function | Interacting selectively and non-covalently with a 30-bp purine-rich negative regulatory element; the best characterized such element is found in the first intronic region of the rat cardiac alpha-myosin heavy chain gene, and contains two palindromic high-affinity Ets-binding sites (CTTCCCTGGAAG). The presence of this element restricts expression of the gene containing it to cardiac myocytes. |
| stereocilium tip | (GO:0032426) | cellular_component | A distinct compartment at the tip of a stereocilium, distal to the site of attachment to the apical cell surface. It consists of a dense matrix bridging the barbed ends of the stereocilium actin filaments with the overlying plasma membrane, is dynamic compared to the shaft, and is required for stereocilium elongation. |
| GBD domain binding | (GO:0032427) | molecular_function | Interacting selectively and non-covalently with the GTPase protein binding domain (GDB) domain of a protein. The GBD is a short motif, including a minimum region of 16 amino acids, identified in proteins that bind to small GTPases such as Cdc42 and Rac. |
| cuticular plate | (GO:0032437) | cellular_component | A dense network of actin filaments found beneath the apical cell surface of hair cells, and into which stereocilia are inserted. |
| DNA hairpin binding | (GO:0032448) | molecular_function | Interacting selectively and non-covalently with DNA containing a hairpin. A hairpin structure forms when a DNA strand folds back on itself and intrachain base pairing occurs between inverted repeat sequences. |
| muramyl dipeptide binding | (GO:0032500) | molecular_function | Interacting selectively and non-covalently, in a non-covalent manner, with muramyl dipeptide; muramyl dipeptide is derived from peptidoglycan. |
| follicle cell microvillus organization | (GO:0032529) | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a microvillus on a follicle cell. A microvillus is a thin cylindrical membrane-covered projection on the surface of an animal cell containing a core bundle of actin filaments. |
| deoxyribonucleoside binding | (GO:0032546) | molecular_function | Interacting selectively and non-covalently with a deoxyribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to deoxyribose. |
| purine deoxyribonucleoside binding | (GO:0032547) | molecular_function | Interacting selectively and non-covalently with a purine deoxyribonucleoside, a compound consisting of a purine base linked to deoxyribose. |
| pyrimidine deoxyribonucleoside binding | (GO:0032548) | molecular_function | Interacting selectively and non-covalently with a pyrimidine deoxyribonucleoside, a compound consisting of a pyrimidine base linked to deoxyribose. |
| ribonucleoside binding | (GO:0032549) | molecular_function | Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose. |
| purine ribonucleoside binding | (GO:0032550) | molecular_function | Interacting selectively and non-covalently with a purine ribonucleoside, a compound consisting of a purine base linked to ribose. |
| pyrimidine ribonucleoside binding | (GO:0032551) | molecular_function | Interacting selectively and non-covalently with a pyrimidine ribonucleoside, a compound consisting of a pyrimidine base linked to ribose. |
| deoxyribonucleotide binding | (GO:0032552) | molecular_function | Interacting selectively and non-covalently with a deoxyribonucleotide, any compound consisting of a deoxyribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the deoxyribose moiety. |
| ribonucleotide binding | (GO:0032553) | molecular_function | Interacting selectively and non-covalently with a ribonucleotide, any compound consisting of a ribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety. |
| purine deoxyribonucleotide binding | (GO:0032554) | molecular_function | Interacting selectively and non-covalently with a purine deoxyribonucleotide, any compound consisting of a purine deoxyribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the deoxyribose moiety. |
| purine ribonucleotide binding | (GO:0032555) | molecular_function | Interacting selectively and non-covalently with a purine ribonucleotide, any compound consisting of a purine ribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety. |
| pyrimidine deoxyribonucleotide binding | (GO:0032556) | molecular_function | Interacting selectively and non-covalently with a pyrimidine deoxyribonucleotide, any compound consisting of a pyrimidine deoxyribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the deoxyribose moiety. |
| pyrimidine ribonucleotide binding | (GO:0032557) | molecular_function | Interacting selectively and non-covalently with a pyrimidine ribonucleotide, any compound consisting of a pyrimidine ribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety. |
| adenyl deoxyribonucleotide binding | (GO:0032558) | molecular_function | Interacting selectively and non-covalently with an adenyl deoxyribonucleotide, any compound consisting of adenosine esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the deoxyribose moiety. |
| adenyl ribonucleotide binding | (GO:0032559) | molecular_function | Interacting selectively and non-covalently with an adenyl ribonucleotide, any compound consisting of adenosine esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety. |
| guanyl deoxyribonucleotide binding | (GO:0032560) | molecular_function | Interacting selectively and non-covalently with a guanyl deoxyribonucleotide, any compound consisting of guanosine esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the deoxyribose moiety. |
| guanyl ribonucleotide binding | (GO:0032561) | molecular_function | Interacting selectively and non-covalently with a guanyl ribonucleotide, any compound consisting of guanosine esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety. |
| dAMP binding | (GO:0032562) | molecular_function | Interacting selectively and non-covalently with dAMP, deoxyadenosine monophosphate. |
| dADP binding | (GO:0032563) | molecular_function | Interacting selectively and non-covalently with dADP, deoxyadenosine diphosphate. |
| dATP binding | (GO:0032564) | molecular_function | Interacting selectively and non-covalently with dATP, deoxyadenosine triphosphate. |
| dGMP binding | (GO:0032565) | molecular_function | Interacting selectively and non-covalently with dGMP, deoxyguanosine monophosphate. |
| dGDP binding | (GO:0032566) | molecular_function | Interacting selectively and non-covalently with dGDP, deoxyguanosine diphosphate. |
| dGTP binding | (GO:0032567) | molecular_function | Interacting selectively and non-covalently with dGTP, deoxyguanosine triphosphate. |
| copper-dependent protein binding | (GO:0032767) | molecular_function | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of copper. |
| lead ion binding | (GO:0032791) | molecular_function | Interacting selectively and non-covalently with lead (Pb) ions. |
| GTPase activating protein binding | (GO:0032794) | molecular_function | Interacting selectively and non-covalently with a GTPase activating protein. |
| heterotrimeric G-protein binding | (GO:0032795) | molecular_function | Interacting selectively and non-covalently with a heterotrimeric G-protein. |
| sterol response element binding | (GO:0032810) | molecular_function | Interacting selectively and non-covalently with the sterol response element (SRE), a nonpalindromic sequence found in the promoters of genes involved in lipid metabolism. |
| tumor necrosis factor receptor superfamily binding | (GO:0032813) | molecular_function | Interacting selectively and non-covalently with any member of the tumor necrosis factor receptor superfamily. |
| intramolecular proline-rich ligand binding | (GO:0032840) | molecular_function | Interacting selectively and non-covalently with a proline-rich region within the same polypeptide. |
| calcitonin binding | (GO:0032841) | molecular_function | Interacting selectively and non-covalently with calcitonin, a peptide hormone responsible for reducing serum calcium levels by inhibiting osteoclastic bone reabsorption and promoting renal calcium excretion. It is synthesized and released by the C cells of the thyroid. |
| sterol binding | (GO:0032934) | molecular_function | Interacting selectively and non-covalently with a sterol, any steroid containing a hydroxy group in the 3 position, closely related to cholestan-3-ol. |
| sterol sensor activity | (GO:0032935) | molecular_function | Interacting selectively and non-covalently with and responding, e.g. by conformational change, to changes in the cellular level of a sterol. |
| protein-containing complex | (GO:0032991) | cellular_component | A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together. |
| acetylcholine receptor binding | (GO:0033130) | molecular_function | Interacting selectively and non-covalently with an acetylcholine receptor. |
| ubiquitin activating enzyme binding | (GO:0033134) | molecular_function | Interacting selectively and non-covalently with a ubiquitin activating enzyme, any of the E1 proteins. |
| progesterone receptor binding | (GO:0033142) | molecular_function | Interacting selectively and non-covalently with a progesterone receptor. |
| FFAT motif binding | (GO:0033149) | molecular_function | Interacting selectively and non-covalently with the FFAT motif, a short motif containing diphenylalanine in an acidic tract that targets proteins to the cytosolic surface of the ER and to the nuclear membrane by binding directly to members of the VAP (VAMP-associated protein) protein family. |
| mitogen-activated protein kinase kinase kinase kinase binding | (GO:0033161) | molecular_function | Interacting selectively and non-covalently with a mitogen-activated protein kinase kinase kinase kinase, any protein that can phosphorylate a MAP kinase kinase kinase. |
| ribonuclease P RNA binding | (GO:0033204) | molecular_function | Interacting selectively and non-covalently with the RNA subunit of ribonuclease P. |
| amide binding | (GO:0033218) | molecular_function | Interacting selectively and non-covalently with an amide, any derivative of an oxoacid in which an acidic hydroxy group has been replaced by an amino or substituted amino group. |
| urea binding | (GO:0033219) | molecular_function | Interacting selectively and non-covalently with urea, a water-soluble carboxamide with the structure H2N-CO-NH2. |
| xylose binding | (GO:0033222) | molecular_function | Interacting selectively and non-covalently with the D- or L-enantiomer of xylose. |
| 2-aminoethylphosphonate binding | (GO:0033226) | molecular_function | Interacting selectively and non-covalently with 2-aminoethylphosphonate. |
| choline binding | (GO:0033265) | molecular_function | Interacting selectively and non-covalently with choline, the amine 2-hydroxy-N,N,N-trimethylethanaminium. |
| monocarboxylic acid binding | (GO:0033293) | molecular_function | Interacting selectively and non-covalently with a monocarboxylic acid, any organic acid containing one carboxyl (COOH) group or anion (COO-). |
| ectoine binding | (GO:0033294) | molecular_function | Interacting selectively and non-covalently with ectoine, 1,4,5,6-tetrahydro-2-methyl-4-pyrimidinecarboxylic acid. |
| hydroxyectoine binding | (GO:0033295) | molecular_function | Interacting selectively and non-covalently with hydroxyectoine. |
| rhamnose binding | (GO:0033296) | molecular_function | Interacting selectively and non-covalently with the D- or L-enantiomer of rhamnose. |
| peroxisome membrane targeting sequence binding | (GO:0033328) | molecular_function | Interacting selectively and non-covalently with a peroxisomal membrane targeting sequence, any of several sequences of amino acids within a protein that can act as a signal for the localization of the protein into the peroxisome membrane. |
| receptor serine/threonine kinase binding | (GO:0033612) | molecular_function | Interacting selectively and non-covalently with a receptor that possesses protein serine/threonine kinase activity. |
| activating transcription factor binding | (GO:0033613) | molecular_function | Interacting selectively and non-covalently with an activating transcription factor, any protein whose activity is required to initiate or upregulate transcription. |
| sialic acid binding | (GO:0033691) | molecular_function | Interacting selectively and non-covalently with sialic acid, any of a variety of N- or O- substituted derivatives of neuraminic acid, a nine carbon monosaccharide. Sialic acids often occur in polysaccharides, glycoproteins, and glycolipids in animals and bacteria. |
| poly(G) binding | (GO:0034046) | molecular_function | Interacting selectively and non-covalently with a sequence of guanine residues in an RNA molecule. |
| estrogen response element binding | (GO:0034056) | molecular_function | Interacting selectively and non-covalently with the estrogen response element (ERE), a conserved sequence found in the promoters of genes whose expression is regulated in response to estrogen. |
| apolipoprotein binding | (GO:0034185) | molecular_function | Interacting selectively and non-covalently with an apolipoprotein, the protein component of a lipoprotein complex. |
| apolipoprotein A-I binding | (GO:0034186) | molecular_function | Interacting selectively and non-covalently with apolipoprotein A-I. |
| obsolete apolipoprotein E binding | (GO:0034187) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with apolipoprotein E. This term was made obsolete because it represents binding to an individual protein. |
| very-low-density lipoprotein particle binding | (GO:0034189) | molecular_function | Interacting selectively and non-covalently with a very-low-density lipoprotein particle, a triglyceride-rich lipoprotein particle that is typically composed of APOB100, APOE and APOCs and has a density of about 1.006 g/ml and a diameter of between 20-80 nm. |
| apolipoprotein receptor binding | (GO:0034190) | molecular_function | Interacting selectively and non-covalently with an apolipoprotein receptor. |
| apolipoprotein A-I receptor binding | (GO:0034191) | molecular_function | Interacting selectively and non-covalently with an apolipoprotein A-I receptor. |
| GPI anchor binding | (GO:0034235) | molecular_function | Interacting selectively and non-covalently with any glycosylphosphatidylinositol anchor. GPI anchors serve to attach membrane proteins to the lipid bilayer of cell membranes. |
| protein kinase A catalytic subunit binding | (GO:0034236) | molecular_function | Interacting selectively and non-covalently with one or both of the catalytic subunits of protein kinase A. |
| protein kinase A regulatory subunit binding | (GO:0034237) | molecular_function | Interacting selectively and non-covalently with one or both of the regulatory subunits of protein kinase A. |
| mitochondrial sequence-specific DNA-binding transcription factor activity | (GO:0034246) | molecular_function | Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by mitochondrial RNA polymerase. |
| adherens junction organization | (GO:0034332) | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an adherens junction. An adherens junction is a cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments. |
| adherens junction assembly | (GO:0034333) | biological_process | The aggregation, arrangement and bonding together of a set of components to form an adherens junction. An adherens junction is a cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments. |
| adherens junction maintenance | (GO:0034334) | biological_process | The maintenance of an adherens junction. An adherens junction is a cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments. |
| misfolded RNA binding | (GO:0034336) | molecular_function | Interacting selectively and non-covalently with an RNA molecule that has assumed an incorrect conformation. |
| type III interferon binding | (GO:0034347) | molecular_function | Interacting selectively and non-covalently with a type III interferon. Interferon lambda is the only member of the type III interferon found so far. |
| response to fluid shear stress | (GO:0034405) | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fluid shear stress stimulus. Fluid shear stress is the force acting on an object in a system where the fluid is moving across a solid surface. |
| U3 snoRNA binding | (GO:0034511) | molecular_function | Interacting selectively and non-covalently with U3 small nucleolar RNA. |
| box C/D snoRNA binding | (GO:0034512) | molecular_function | Interacting selectively and non-covalently with box C/D small nucleolar RNA. |
| box H/ACA snoRNA binding | (GO:0034513) | molecular_function | Interacting selectively and non-covalently with box H/ACA small nucleolar RNA. |
| 21U-RNA binding | (GO:0034583) | molecular_function | Interacting selectively and non-covalently with a 21U-RNA, a 21-nucleotide RNA characterized by a uridine 5'-monophosphate and a modified 3' end resistant to periodate degradation. 21U-RNAs are derived from distinct, autonomously expressed loci within the genome. |
| piRNA binding | (GO:0034584) | molecular_function | Interacting selectively and non-covalently with a piRNA, a Piwi-associated RNA, a 24- to 30-nucleotide RNA derived from repeat or complex DNA sequence elements and processed by a Dicer-independent mechanism. |
| response to laminar fluid shear stress | (GO:0034616) | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a laminar fluid shear stress stimulus. Laminar fluid flow is the force acting on an object in a system where the fluid is moving across a solid surface in parallel layers. As an example, laminar shear stress can be seen where blood flows against the luminal side of blood vessel walls. |
| tetrahydrobiopterin binding | (GO:0034617) | molecular_function | Interacting selectively and non-covalently with a tetrahydrobiopterin, 5,6,7,8-tetrahydrobiopterin or a derivative thereof; tetrahydrobiopterins are enzyme cofactors that carry electrons in redox reactions. |
| arginine binding | (GO:0034618) | molecular_function | Interacting selectively and non-covalently with 2-amino-5-(carbamimidamido)pentanoic acid. |
| CFTR-NHERF-ezrin complex | (GO:0034662) | cellular_component | A protein complex that contains ezrin, Na+/H+ exchanger regulatory factor (NHERF, also called EBP50), and two copies of the cystic fibrosis transmembrane conductance regulator (CFTR). The CFTR molecules interact with NHERF via their cytoplasmic tail domains; the complex is thought to link the CFTR channel to the actin cytoskeleton and contribute to the regulation of channel activity. |
| inhibin complex binding | (GO:0034710) | molecular_function | Interacting selectively and non-covalently with an inhibin complex, a dimer of one inhibin-alpha subunit and one inhibin-beta subunit. |
| inhibin binding | (GO:0034711) | molecular_function | Interacting selectively and non-covalently with an inhibin monomer, any of the polypeptides that combine to form activin and inhibin dimers. |
| type I transforming growth factor beta receptor binding | (GO:0034713) | molecular_function | Interacting selectively and non-covalently with a type I transforming growth factor beta receptor. |
| type III transforming growth factor beta receptor binding | (GO:0034714) | molecular_function | Interacting selectively and non-covalently with a type III transforming growth factor beta receptor. |
| response to histamine | (GO:0034776) | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a histamine stimulus. Histamine, the biogenic amine 2-(1H-imidazol-4-yl)ethanamine, is involved in local immune responses as well as regulating physiological function in the gut and acting as a neurotransmitter. |
| response to endoplasmic reticulum stress | (GO:0034976) | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stress acting at the endoplasmic reticulum. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen. |
| immunoglobulin receptor binding | (GO:0034987) | molecular_function | Interacting selectively and non-covalently with one or more specific sites on an immunoglobulin receptor molecule. |
| Fc-gamma receptor I complex binding | (GO:0034988) | molecular_function | Interacting selectively and non-covalently with one or more specific sites on the Fc-gamma receptor I complex. The complex functions primarily as an activating receptor for IgG. |
| histone acetyltransferase binding | (GO:0035035) | molecular_function | Interacting selectively and non-covalently with the enzyme histone acetyltransferase. |
| methylated histone binding | (GO:0035064) | molecular_function | Interacting selectively and non-covalently with a histone in which a residue has been modified by methylation. Histones are any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. |
| phosphatidylinositol binding | (GO:0035091) | molecular_function | Interacting selectively and non-covalently with any inositol-containing glycerophospholipid, i.e. phosphatidylinositol (PtdIns) and its phosphorylated derivatives. |
| ecdysone binding | (GO:0035100) | molecular_function | Interacting selectively and non-covalently with 20-hydroxyecdysone (ecdysone). Ecdysone is an ecdysteroid produced by the prothoracic glands of immature insects and the ovaries of adult females, which stimulates growth and molting. |
| female germline ring canal outer rim | (GO:0035182) | cellular_component | An electron opaque backbone of the insect ovarian ring canal that is a part of or adjacent to the plasma membrane. The outer rim is established as the cleavage furrow is arrested, and contains F-actin, anillin, glycoproteins and at least one a protein with a high content of phosphorylated tyrosine residues. |
| female germline ring canal inner rim | (GO:0035183) | cellular_component | A proteinaceous actin-rich layer of the insect ovarian ring canal that forms subcortically to the outer rim. The electron dense inner rim accumulates after the final mitotic division of each germline syncytia, and contains actin, a phosphotyrosine protein, and a number of cytoskeletal proteins. |
| siRNA binding | (GO:0035197) | molecular_function | Interacting selectively and non-covalently with a small interfering RNA, a 21-23 nucleotide RNA that is processed from double stranded RNA (dsRNA) by an RNAse enzyme. |
| miRNA binding | (GO:0035198) | molecular_function | Interacting selectively and non-covalently with a microRNA, a 21-23 nucleotide RNA that is processed from a stem-loop RNA precursor (pre-miRNA) that is encoded within plant and animal genomes. |
| glutamate-cysteine ligase catalytic subunit binding | (GO:0035226) | molecular_function | Interacting selectively and non-covalently with the catalytic subunit of glutamate-cysteine ligase. |
| cytoneme | (GO:0035230) | cellular_component | A long, thin, polarized cell projection that contains actin and can extend for distances many times the diameter of the cell. Cytonemes represent extensions of cell cytoplasm and typically have a diameter of approximately 0.2um. |
| cytoneme assembly | (GO:0035231) | biological_process | Formation of a cytoneme, a long, thin and polarized actin-based cytoplasmic extension that projects from a cell. |
| dopamine binding | (GO:0035240) | molecular_function | Interacting selectively and non-covalently with dopamine, a catecholamine neurotransmitter formed by aromatic-L-amino-acid decarboxylase from 3,4-dihydroxy-L-phenylalanine. |
| glutamate receptor binding | (GO:0035254) | molecular_function | Interacting selectively and non-covalently with a glutamate receptor. |
| ionotropic glutamate receptor binding | (GO:0035255) | molecular_function | Interacting selectively and non-covalently with an ionotropic glutamate receptor. Ionotropic glutamate receptors bind glutamate and exert an effect through the regulation of ion channels. |
| G protein-coupled glutamate receptor binding | (GO:0035256) | molecular_function | Interacting selectively and non-covalently with a G protein-coupled glutamate receptor (a metabotropic glutamate receptor). |
| nuclear hormone receptor binding | (GO:0035257) | molecular_function | Interacting selectively and non-covalently with a nuclear hormone receptor, a ligand-dependent receptor found in the nucleus of the cell. |
| steroid hormone receptor binding | (GO:0035258) | molecular_function | Interacting selectively and non-covalently with a steroid hormone receptor. |
| glucocorticoid receptor binding | (GO:0035259) | molecular_function | Interacting selectively and non-covalently with a glucocorticoid receptor. |
| NuA4 histone acetyltransferase complex | (GO:0035267) | cellular_component | A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60). |
| phthalate binding | (GO:0035273) | molecular_function | Interacting selectively and non-covalently with a phthalate, any ester or salt of phthalic acid. |
| diphenyl phthalate binding | (GO:0035274) | molecular_function | Interacting selectively and non-covalently with diphenyl phthalate, C(20)H(14)O(4). |
| dibutyl phthalate binding | (GO:0035275) | molecular_function | Interacting selectively and non-covalently with dibutyl phthalate, C(16)H(22)O(4). |
| ethanol binding | (GO:0035276) | molecular_function | Interacting selectively and non-covalently with ethanol, CH(3)-CH(2)-OH. |
| imaginal disc-derived wing hair organization | (GO:0035317) | biological_process | A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of an imaginal disc-derived wing hair. A wing hair is an actin-rich, polarized, non-sensory apical projection that protrudes from each of the approximately 30,000 wing epithelial cells. An example of this is found in Drosophila melanogaster. |
| imaginal disc-derived wing hair elongation | (GO:0035319) | biological_process | Growth of a prehair in the approximately 10 hour period following its emergence from an epidermal cell in an imaginal disc-derived wing. Prehair elongation is guided and/or driven by the polymerization of actin filaments and the orderly crosslinking of filaments into bundles. |
| Toll-like receptor binding | (GO:0035325) | molecular_function | Interacting selectively and non-covalently with a Toll-like protein, a pattern recognition receptor that binds pattern motifs from a variety of microbial sources to initiate an innate immune response. |
| enhancer binding | (GO:0035326) | molecular_function | Interacting selectively and non-covalently with an enhancer, a transcription regulatory region that is somewhat distal from the core promoter and which enhances transcription from that promoter. |
| selenocysteine insertion sequence binding | (GO:0035368) | molecular_function | Interacting selectively and non-covalently with the selenocysteine insertion sequence (SECIS), a regulatory sequence within mRNA which directs incorporation of a selenocysteine at a stop codon (UGA) during translation. |
| chondroitin sulfate proteoglycan binding | (GO:0035373) | molecular_function | Interacting selectively and non-covalently with a chondroitin sulfate proteoglycan, any proteoglycan containing chondroitin sulfate as the glycosaminoglycan carbohydrate unit. |
| chondroitin sulfate binding | (GO:0035374) | molecular_function | Interacting selectively and non-covalently with chondroitin sulfate, a glycosaminoglycan made up of two alternating monosaccharides: D-glucuronic acid (GlcA) and N-acetyl-D-galactosamine (GalNAc). |
| zymogen binding | (GO:0035375) | molecular_function | Interacting selectively and non-covalently with a zymogen, an enzymatically inactive precursor of an enzyme that is often convertible to an active enzyme by proteolysis. |
| cyclic-di-GMP binding | (GO:0035438) | molecular_function | Interacting selectively and non-covalently with cyclic-di-GMP, cyclic dimeric guanosine monophosphate. |
| lipase binding | (GO:0035473) | molecular_function | Interacting selectively and non-covalently with any lipase. |
| chylomicron binding | (GO:0035478) | molecular_function | Interacting selectively and non-covalently with a chylomicron, a large lipoprotein particle (diameter 75-1200 nm) composed of a central core of triglycerides and cholesterol surrounded by a protein-phospholipid coating. The proteins include one molecule of apolipoprotein B-48 and may include a variety of apolipoproteins, including APOAs, APOCs and APOE. |
| adenine/adenine mispair binding | (GO:0035484) | molecular_function | Interacting selectively and non-covalently with double-stranded DNA containing an A/A mispair. |
| adenine/guanine mispair binding | (GO:0035485) | molecular_function | Interacting selectively and non-covalently with double-stranded DNA containing an A/G mispair. |
| cytosine/cytosine mispair binding | (GO:0035486) | molecular_function | Interacting selectively and non-covalently with double-stranded DNA containing a C/C mispair. |
| thymine/thymine mispair binding | (GO:0035487) | molecular_function | Interacting selectively and non-covalently with double-stranded DNA containing a T/T mispair. |
| cytosine/thymine mispair binding | (GO:0035488) | molecular_function | Interacting selectively and non-covalently with double-stranded DNA containing a C/T mispair. |
| guanine/guanine mispair binding | (GO:0035489) | molecular_function | Interacting selectively and non-covalently with double-stranded DNA containing a G/G mispair. |
| cAMP response element binding | (GO:0035497) | molecular_function | Interacting selectively and non-covalently with the cyclic AMP response element (CRE), a short palindrome-containing sequence found in the promoters of genes whose expression is regulated in response to cyclic AMP. |
| MH2 domain binding | (GO:0035500) | molecular_function | Interacting selectively and non-covalently with the MH2 (MAD homology 2) domain of a protein. The MH2 domain is found at the carboxy terminus of MAD related proteins such as Smads. The MH2 domain mediates interaction with a wide variety of proteins and provides specificity and selectivity to Smad function and also is critical for mediating interactions in Smad oligomers. |
| MH1 domain binding | (GO:0035501) | molecular_function | Interacting selectively and non-covalently with the MH1 (MAD homology 1) domain of a protein. The MH1 domain is found at the amino terminus of MAD related proteins such as Smads and can mediate DNA binding in some proteins. Smads also use the MH1 domain to interact with some transcription factors. |
| carbohydrate response element binding | (GO:0035538) | molecular_function | Interacting selectively and non-covalently with the carbohydrate response element (ChoRE) found in the promoters of genes whose expression is regulated in response to carbohydrates, such as the triglyceride synthesis genes. |
| Roundabout binding | (GO:0048495) | molecular_function | Interacting selectively and non-covalently with the Roundabout (ROBO) receptor, a transmembrane receptor. |
| ganglioside binding | (GO:0035594) | molecular_function | Interacting selectively and non-covalently with a ganglioside, a ceramide oligosaccharide carrying in addition to other sugar residues, one or more sialic acid residues. |
| AP-2 adaptor complex binding | (GO:0035612) | molecular_function | Interacting selectively and non-covalently with the AP-2 adaptor complex. The AP-2 adaptor complex is a heterotetrameric AP-type membrane coat adaptor complex that consists of alpha, beta2, mu2 and sigma2 subunits and links clathrin to the membrane surface of a vesicle. In at least humans, the AP-2 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different alpha genes (alphaA and alphaC). |
| RNA stem-loop binding | (GO:0035613) | molecular_function | Interacting selectively and non-covalently with a stem-loop in an RNA molecule. An RNA stem-loop is a secondary RNA structure consisting of a double-stranded RNA (dsRNA) stem and a terminal loop. |
| snRNA stem-loop binding | (GO:0035614) | molecular_function | Interacting selectively and non-covalently with a stem-loop in a small nuclear RNA (snRNA). An RNA stem-loop is a secondary RNA structure consisting of a double-stranded RNA (dsRNA) stem and a terminal loop. |
| root hair | (GO:0035618) | cellular_component | A long, thin projection from a root epidermal cell that contains F-actin and tubulin, and a cell wall. |
| purine ribonucleoside triphosphate binding | (GO:0035639) | molecular_function | Interacting selectively and non-covalently with a purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar. |
| AP-1 adaptor complex binding | (GO:0035650) | molecular_function | Interacting selectively and non-covalently with the AP-1 adaptor complex. The AP-1 adaptor complex is a heterotetrameric AP-type membrane coat adaptor complex that consists of beta1, gamma, mu1 and sigma1 subunits and links clathrin to the membrane surface of a vesicle. In at least humans, the AP-1 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different genes (gamma1 and gamma2, mu1A and mu1B, and sigma1A, sigma1B and sigma1C). |
| AP-3 adaptor complex binding | (GO:0035651) | molecular_function | Interacting selectively and non-covalently with the AP-3 adaptor complex. The AP-3 adaptor complex is a heterotetrameric AP-type membrane coat adaptor complex that consists of beta3, delta, mu3 and sigma3 subunits and is found associated with endosomal membranes. In at least humans, the AP-3 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different genes (beta3A and beta3B, mu3A and mu3B, and sigma3A and sigma3B). |
| Toll-like receptor 4 binding | (GO:0035662) | molecular_function | Interacting selectively and non-covalently with a Toll-like 4 protein, a pattern recognition receptor that binds bacterial lipopolysaccharide (LPS) to initiate an innate immune response. |
| Toll-like receptor 2 binding | (GO:0035663) | molecular_function | Interacting selectively and non-covalently with a Toll-like 2 protein, a pattern recognition receptor that binds microbial pattern motifs to initiate an innate immune response. |
| chemokine (C-C motif) ligand 2 binding | (GO:0035715) | molecular_function | Interacting selectively and non-covalently with chemokine (C-C motif) ligand 2. |
| chemokine (C-C motif) ligand 12 binding | (GO:0035716) | molecular_function | Interacting selectively and non-covalently with chemokine (C-C motif) ligand 12. |
| chemokine (C-C motif) ligand 7 binding | (GO:0035717) | molecular_function | Interacting selectively and non-covalently with chemokine (C-C motif) ligand 7. |
| macrophage migration inhibitory factor binding | (GO:0035718) | molecular_function | Interacting selectively and non-covalently with the cytokine, macrophage migration inhibitory factor. |
| lysophosphatidic acid binding | (GO:0035727) | molecular_function | Interacting selectively and non-covalently with lysophosphatidic acid (LPA), a phospholipid derivative that acts as a potent mitogen due to its activation of high-affinity G protein-coupled receptors. |
| S-nitrosoglutathione binding | (GO:0035730) | molecular_function | Interacting selectively and non-covalently with S-nitrosoglutathione, a nitrosothiol considered to be a natural nitric oxide (NO) donor involved in S-nitrosylation, and in the storage and transport of nitric oxide in biological systems. |
| dinitrosyl-iron complex binding | (GO:0035731) | molecular_function | Interacting selectively and non-covalently with a dinitrosyl-iron complex. Nitric oxide (NO) is stored as dinitrosyl-iron complexes, which form spontaneously from Glutathione (GSH), S-nitrosoglutathione, and trace amounts of ferrous ions, or by reaction of iron-sulfur centers with NO. |
| chemokine (C-C motif) ligand 19 binding | (GO:0035757) | molecular_function | Interacting selectively and non-covalently with chemokine (C-C motif) ligand 19. |
| chemokine (C-C motif) ligand 21 binding | (GO:0035758) | molecular_function | Interacting selectively and non-covalently with chemokine (C-C motif) ligand 21. |
| other organism postsynaptic membrane | (GO:0035792) | cellular_component | A postsynaptic membrane that is part of another organism, i.e. a secondary organism with which the first organism is interacting. A postsynaptic membrane is a specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters transmit the signal across the synaptic cleft to the postsynaptic membrane. |
| non-growing cell tip | (GO:0035839) | cellular_component | A cell tip at which no growth takes place. For example, in fission yeast the cell end newly formed by cell division does not grow immediately upon its formation, and lacks actin cytoskeletal structures. |
| old growing cell tip | (GO:0035840) | cellular_component | A cell tip which has existed for at least one complete cell cycle, and at which polarized growth occurs. For example, in fission yeast the cell end that existed prior to cell division grows immediately after division, and contains a distinctive complement of proteins including actin cytoskeletal structures. |
| old cell tip after activation of bipolar cell growth | (GO:0035842) | cellular_component | A cell tip which has existed for at least one complete cell cycle, and at which polarized growth occurs, which is part of a cell that has activated bipolar cell growth (i.e. in which new end take-off, NETO, has taken place). For example, in fission yeast the cell end that existed prior to cell division grows immediately after division, and contains a distinctive complement of proteins including actin cytoskeletal structures. |
| Krueppel-associated box domain binding | (GO:0035851) | molecular_function | Interacting selectively and non-covalently with a Krueppel-associated box (KRAB) domain of a protein. The approximately 75 amino acid KRAB domain is enriched in charged amino acids, and is found in the N-terminal regions of many zinc finger-containing transcription factors. |
| death effector domain binding | (GO:0035877) | molecular_function | Interacting selectively and non-covalently with a DED domain (death effector domain) of a protein, a homotypic protein interaction module composed of a bundle of six alpha-helices that is related in structure to the death domain (DD). |
| flurbiprofen binding | (GO:0035923) | molecular_function | Interacting selectively and non-covalently with flurbiprofen. |
| mRNA 3'-UTR AU-rich region binding | (GO:0035925) | molecular_function | Interacting selectively and non-covalently with a region containing frequent adenine and uridine bases within the 3' untranslated region of a mRNA molecule. |
| microsatellite binding | (GO:0035939) | molecular_function | Interacting selectively and non-covalently with a microsatellite, a repeat_region in DNA containing repeat units (2 to 4 base pairs) that is repeated multiple times in tandem. |
| nitric oxide sensor activity | (GO:0035991) | molecular_function | Interacting selectively and non-covalently with and responding, e.g. by conformational change, to changes in the cellular level of nitric oxide (NO). |
| pre-mRNA binding | (GO:0036002) | molecular_function | Interacting selectively and non-covalently with pre-messenger RNA (pre-mRNA), an intermediate molecule between DNA and protein that may contain introns and, at least in part, encodes one or more proteins. Introns are removed from pre-mRNA to form a mRNA molecule. |
| GAF domain binding | (GO:0036004) | molecular_function | Interacting selectively and non-covalently with the GAF domain of a protein. |
| mediator complex binding | (GO:0036033) | molecular_function | Interacting selectively and non-covalently with a mediator complex. The mediator complex is a protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins. |
| long-chain fatty acid binding | (GO:0036041) | molecular_function | Interacting selectively and non-covalently with a long-chain fatty acid. A long-chain fatty acid is a fatty acid with a chain length between C13 and C22. |
| long-chain fatty acyl-CoA binding | (GO:0036042) | molecular_function | Interacting selectively and non-covalently with a long-chain fatty acyl-CoA. A long-chain fatty acyl-CoA is any derivative of coenzyme A in which the sulfhydryl group is in a thioester linkage with a long-chain fatty-acyl group. Long-chain fatty-acyl-CoAs have chain lengths of C13 or more. |
| obsolete microspike | (GO:0036043) | cellular_component | OBSOLETE. A dynamic, actin-rich projection extending from the surface of a migrating animal cell. This term was made obsolete because it accidentally reused an exisiting id. See replacement term GO:0044393. |
| microspike | (GO:0044393) | cellular_component | A dynamic, actin-rich projection extending from the surface of a migrating animal cell. |
| small molecule binding | (GO:0036094) | molecular_function | Interacting selectively and non-covalently with a small molecule, any low molecular weight, monomeric, non-encoded molecule. |
| peroxisome membrane class-1 targeting sequence binding | (GO:0036105) | molecular_function | Interacting selectively and non-covalently with a class I peroxisomal membrane targeting sequence, any of several sequences of amino acids within a protein that can act as a signal for the localization of the protein into the peroxisome membrane in a PEX19-dependent manner. |
| peroxisome membrane class-2 targeting sequence binding | (GO:0036106) | molecular_function | Interacting selectively and non-covalently with a class II peroxisomal membrane targeting sequence, any of several sequences of amino acids within a protein that can act as a signal for the localization of the protein into the peroxisome membrane in a PEX19-independent manner. |
| BMP binding | (GO:0036122) | molecular_function | Interacting selectively and non-covalently with a member of the bone morphogenetic protein (BMP) family. |
| 3-sulfino-L-alanine binding | (GO:0036127) | molecular_function | Interacting selectively and non-covalently with 3-sulfino-L-alanine (cysteine sulfinate). |
| kringle domain binding | (GO:0036143) | molecular_function | Interacting selectively and non-covalently with a kringle domain. Kringle domains are protein domains that fold into large loops stabilized by 3 disulfide linkages, and are important in protein-protein interactions with blood coagulation factors. |
| oxytocin secretion | (GO:0036162) | biological_process | The regulated release of oxytocin, a cyclic nonapeptide hormone with amino acid sequence CYIQNCPLG that also acts as a neurotransmitter in the brain, from a cell. Oxytocin is the principal uterine-contracting and milk-ejecting hormone of the posterior pituitary, and together with the neuropeptide vasopressin, is believed to influence social cognition and behavior. |
| thiosulfate binding | (GO:0036173) | molecular_function | Interacting selectively and non-covalently with the inorganic anion thiosulfate, a sulfur oxide that has formula O3S2. |
| pairing center | (GO:0036224) | cellular_component | A special chromosome region located towards one end of a chromosome that contains dispersed copies of short, repetitive DNA sequences and functions as a cis-acting element essential for presynaptic homologous chromosome pairing and chromosome-nuclear envelope attachment. |
| response to statin | (GO:0036273) | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a statin stimulus. Statins are organooxygen compounds whose structure is related to compactin (mevastatin) and which may be used as an anticholesteremic drug due its EC 1.1.1.34/EC 1.1.1.88 (hydroxymethylglutaryl-CoA reductase) inhibitory properties. |
| coflocculation via protein-carbohydrate interaction | (GO:0036282) | biological_process | The non-sexual aggregation between single-celled organisms of different species mediated by interaction of a protein in one species and a carbohydrate in the other species. For example, coflocculation between S. pombe and E. coli is mediated by mannose residues in the yeast cell wall interacting with lectin protein in E. coli cell projections. |
| tubulobulbar complex | (GO:0036284) | cellular_component | Actin-based structures involved in establishing close contact between Sertoli-Sertoli cells or Sertoli-spermatids in the seminiferous tubules of the testes. |
| phosphatidylinositol 3-kinase regulatory subunit binding | (GO:0036312) | molecular_function | Interacting selectively and non-covalently with a regulatory subunit of phosphatidylinositol 3-kinase. The regulatory subunit associates with the catalytic subunit to regulate both its activity and subcellular location. |
| phosphatidylinositol 3-kinase catalytic subunit binding | (GO:0036313) | molecular_function | Interacting selectively and non-covalently with the catalytic subunit of a phosphatidylinositol 3-kinase. The catalytic subunit catalyzes the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring. |
| K48-linked polyubiquitin modification-dependent protein binding | (GO:0036435) | molecular_function | Interacting selectively and non-covalently with a protein upon poly-ubiquitination formed by linkages between lysine residues at position 48 in the target protein. |
| hepatocyte growth factor binding | (GO:0036458) | molecular_function | Interacting selectively and non-covalently with a hepatocyte growth factor. |
| cellular response to cell envelope stress | (GO:0036460) | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stress acting at the cell envelope. |
| BLOC-2 complex binding | (GO:0036461) | molecular_function | Interacting selectively and non-covalently with a BLOC-2 complex, a protein complex required for the biogenesis of specialized organelles of the endosomal-lysosomal system, such as melanosomes and platelet dense granules. |
| Derlin-1-VIMP complex | (GO:0036502) | cellular_component | A protein complex containing, in mammals, Derlin-1 and VCP-interacting membrane protein (VIMP). The complex links the p97/VCP-containing ATPase complex with Derlin-1 during translocation of protein substrates from the endoplasmic reticulum to the cytosol for degradation by the cytosolic proteasome. |
| RNA polymerase II transcription factor activity, glucocorticoid-activated sequence-specific DNA binding | (GO:0038050) | molecular_function | Combining with a glucocorticoid and transmitting the signal to the transcriptional machinery by interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. |
| RNA polymerase II transcription factor activity, estrogen-activated sequence-specific DNA binding | (GO:0038052) | molecular_function | Combining with estrogen and transmitting the signal to the transcriptional machinery by interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. |
| transcription factor activity, estrogen-activated RNA polymerase II transcription factor binding | (GO:0038053) | molecular_function | Combining with estrogen and transmitting the signal to the transcriptional machinery by interacting selectively and non-covalently with an RNA polymerase II transcription factor, which may be a single protein or a complex, in order to modulate transcription. For example, estrogen-bound receptors can bind to transcription factor complexes to regulate transcription of genes whose promoters do not contain estrogen response elements. |
| TNFSF11 binding | (GO:0038057) | molecular_function | Interacting selectively and non-covalently with tumor necrosis factor ligand superfamily member 11 (TNFSF11), a member of the tumor necrosis factor (TNF) cytokine family. |
| vascular endothelial growth factor binding | (GO:0038085) | molecular_function | Interacting selectively and non-covalently with a vascular endothelial growth factor. |
| nodal binding | (GO:0038100) | molecular_function | Interacting selectively and non-covalently with a nodal protein, a member of the transforming growth factor-beta superfamily. |
| activin receptor antagonist activity | (GO:0038102) | molecular_function | Interacting with an activin receptor complex to reduce the action of another ligand, the agonist. A receptor antagonist does not initiate signaling upon binding to a receptor, but instead blocks an agonist from binding to the receptor. |
| activin receptor antagonist activity involved in negative regulation of nodal signaling pathway | (GO:0038103) | molecular_function | Interacting with an activin receptor to reduce the action of the agonist nodal. A receptor antagonist does not initiate signaling upon binding to a receptor, but instead blocks an agonist from binding to the receptor. |
| choriogonadotropin hormone binding | (GO:0038106) | molecular_function | Interacting selectively and non-covalently with choriogonadotropin hormone, a heterodimer, with an alpha subunit identical to that of luteinizing hormone (LH), follicle-stimulating hormone (FSH) and thyroid-stimulating hormone (TSH), and a unique beta subunit. |
| neuregulin binding | (GO:0038132) | molecular_function | Interacting selectively and non-covalently with a neuregulin, a member of the EGF family of growth factors. |
| death receptor agonist activity | (GO:0038177) | molecular_function | Interacting with a death receptor such that the proportion of death receptors in an active form is increased. Ligand binding to a death receptor often induces a conformational change to activate the receptor. |
| neuropilin binding | (GO:0038191) | molecular_function | Interacting selectively and non-covalently with a member of the neuropilin family. |
| obsolete suppression by virus of host RIG-I via RIG-I binding | (GO:0039541) | biological_process | OBSOLETE. Any process in which a virus stops, prevents, or reduces the activity of RIG-I (also known as DDX58) by interacting selectively and non-covalently with RIG-I itself. The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. |
| RIG-I binding | (GO:0039552) | molecular_function | Interacting selectively and non-covalently with RIG-I, a cytosolic pattern recognition receptor that initiates an antiviral signaling pathway upon binding to viral RNA. |
| obsolete suppression by virus of host MDA-5 activity via MDA-5 binding | (GO:0039555) | biological_process | OBSOLETE. Any process in which a virus stops, prevents, or reduces the activity of MDA-5 (also known as IFIH1) by interacting selectively and non-covalently with MDA-5 itself. For example, direct binding of viral proteins to the host MDA-5 protein can inhibit interaction of MDA-5 with MAVS, its downstream signaling effector. The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. |
| MDA-5 binding | (GO:0039556) | molecular_function | Interacting selectively and non-covalently with MDA-5, a cytosolic pattern recognition receptor that initiates an antiviral signaling pathway upon binding to viral dsRNA. |
| obsolete suppression by virus of host JAK1 activity via JAK1 binding | (GO:0039578) | biological_process | OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host JAK1 (Janus Kinase 1) activity by interacting directly and selectively with JAK1. For example, the polyoma virus T antigen binds to JAK1 and renders it inactive. The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. |
| suppression by virus of host ISG15 activity | (GO:0039579) | biological_process | Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host ubiquitin-like protein ISG15 activity. ISG15 is a ubiquitin-like protein that is conjugated to lysine residues on various target proteins. Viruses escape from the antiviral activity of ISG15 by using different mechanisms; the influenza B virus NS1 protein for instance blocks the covalent linkage of ISG15 to its target proteins by directly interacting with ISG15. The papain-like protease from the coronavirus cleaves ISG15 derivatives. |
| obsolete suppression by virus of host PKR activity via double-stranded RNA binding | (GO:0039581) | biological_process | OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host PKR (protein kinase regulated by RNA) activity by interacting selectively and non-covalently with double-stranded RNA (dsRNA). Binding of viral proteins to RNA may sequester or alter the RNA so it can not be recognized by host PKR, or may compete with PKR for dsRNA binding. The reason for obsoleting this term is that it is too specific. The exact molecular roles of the individual proteins should be captured separately. |
| co-receptor binding | (GO:0039706) | molecular_function | Interacting selectively and non-covalently with a coreceptor. A coreceptor acts in cooperation with a primary receptor to transmit a signal within the cell. |
| interleukin-18 binding | (GO:0042007) | molecular_function | Interacting selectively and non-covalently with interleukin-18. |
| interleukin-15 binding | (GO:0042009) | molecular_function | Interacting selectively and non-covalently with interleukin-15. |
| interleukin-16 binding | (GO:0042011) | molecular_function | Interacting selectively and non-covalently with interleukin-16. |
| interleukin-19 binding | (GO:0042013) | molecular_function | Interacting selectively and non-covalently with interleukin-19. |
| interleukin-20 binding | (GO:0042015) | molecular_function | Interacting selectively and non-covalently with interleukin-20. |
| interleukin-22 binding | (GO:0042017) | molecular_function | Interacting selectively and non-covalently with interleukin-22. |
| interleukin-23 binding | (GO:0042019) | molecular_function | Interacting selectively and non-covalently with interleukin-23. |
| granulocyte macrophage colony-stimulating factor complex binding | (GO:0042021) | molecular_function | Interacting selectively and non-covalently with the granulocyte macrophage colony-stimulating factor complex. |
| rRNA primary transcript binding | (GO:0042134) | molecular_function | Interacting selectively and non-covalently with an unprocessed ribosomal RNA transcript. |
| obsolete RPTP-like protein binding | (GO:0042153) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with proteins with similar structure/function to receptor protein tyrosine phosphatases. This term was made obsolete because it represents binding to an individual protein. |
| obsolete zinc-mediated transcriptional activator activity | (GO:0042156) | molecular_function | OBSOLETE. Initiates or upregulates transcription in the presence of zinc. This term was obsoleted because it is defined as a Process term, i.e. it is defined only in terms of the process it acts in and it does NOT convey any information about the molecular nature of the function or whether the function is based on binding DNA, on interacting with other proteins, or some other mechanism. To transfer all annotations without review, the BP term indicated is considered to be equivalent and thus the only appropriate destination for all annotations. To reannotate to a MF term, you will probably need to revisit the original literature or other primary data because this "MF" term was not defined in terms of mechanism of action and there are multiple possibilities in the revised MF structure. In reannotation, please also consider descendent terms of the suggested MF terms as a more specific term may be more appropriate than the MF terms indicated. Please be aware that you may wish to request a new term if the mechanism of action of this gene product is not yet represented or if you are annotating for an RNAP different than one for which there is a specific suggested term. Also note that if there is no information about how the gene product acts, it may be appropriate to annotate to the root term for molecular_function. |
| interleukin-12 beta subunit binding | (GO:0042163) | molecular_function | Interacting selectively and non-covalently with the beta subunit of interleukin-12. |
| interleukin-12 alpha subunit binding | (GO:0042164) | molecular_function | Interacting selectively and non-covalently with the alpha subunit of interleukin-12. |
| neurotransmitter binding | (GO:0042165) | molecular_function | Interacting selectively and non-covalently with a neurotransmitter, any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell. |
| acetylcholine binding | (GO:0042166) | molecular_function | Interacting selectively and non-covalently with acetylcholine, an acetic acid ester of the organic base choline that functions as a neurotransmitter, released at the synapses of parasympathetic nerves and at neuromuscular junctions. |
| SH2 domain binding | (GO:0042169) | molecular_function | Interacting selectively and non-covalently with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class. |
| peptide binding | (GO:0042277) | molecular_function | Interacting selectively and non-covalently with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds. |
| MHC protein binding | (GO:0042287) | molecular_function | Interacting selectively and non-covalently with major histocompatibility complex molecules; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation. |
| MHC class I protein binding | (GO:0042288) | molecular_function | Interacting selectively and non-covalently with major histocompatibility complex class I molecules; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation. |
| MHC class II protein binding | (GO:0042289) | molecular_function | Interacting selectively and non-covalently with major histocompatibility complex class II molecules; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation. |
| phosphate ion binding | (GO:0042301) | molecular_function | Interacting selectively and non-covalently with phosphate. |
| bacteriochlorophyll binding | (GO:0042314) | molecular_function | Interacting selectively and non-covalently with bacteriochlorophyll, a form of chlorophyll found in photosynthetic bacteria, such as the purple and green bacteria. There are several types, designated a to g. Bacteriochlorophyll a and bacteriochlorophyll b are structurally similar to the chlorophyll a and chlorophyll b found in plants. |
| hypocretin receptor binding | (GO:0042324) | molecular_function | Interacting selectively and non-covalently with the hypocretin receptor. |
| chemokine receptor binding | (GO:0042379) | molecular_function | Interacting selectively and non-covalently with any chemokine receptor. |
| triacyl lipopeptide binding | (GO:0042497) | molecular_function | Interacting selectively and non-covalently with a lipopeptide containing a nonprotein moiety consisting of three acyl groups. |
| diacyl lipopeptide binding | (GO:0042498) | molecular_function | Interacting selectively and non-covalently with a lipopeptide containing a nonprotein moiety consisting of two acyl groups. |
| hormone binding | (GO:0042562) | molecular_function | Interacting selectively and non-covalently with any hormone, naturally occurring substances secreted by specialized cells that affect the metabolism or behavior of other cells possessing functional receptors for the hormone. |
| CD4 receptor binding | (GO:0042609) | molecular_function | Interacting selectively and non-covalently with a CD4, a receptor found on the surface of T cells, monocytes and macrophages. |
| CD8 receptor binding | (GO:0042610) | molecular_function | Interacting selectively and non-covalently with a CD8, a receptor found on the surface of thymocytes and cytotoxic and suppressor T-lymphocytes. |
| actomyosin | (GO:0042641) | cellular_component | Any complex of actin, myosin, and accessory proteins. |
| actomyosin, myosin complex part | (GO:0042642) | cellular_component | The myosin part of any complex of actin, myosin, and accessory proteins. |
| MHC class II protein binding, via lateral surface | (GO:0042657) | molecular_function | Interacting selectively and non-covalently with the lateral surface of major histocompatibility complex class II molecules. |
| MHC class II protein binding, via antigen binding groove | (GO:0042658) | molecular_function | Interacting selectively and non-covalently with the antigen binding groove of major histocompatibility complex class II molecules. |
| PH domain binding | (GO:0042731) | molecular_function | Interacting selectively and non-covalently with a PH domain (pleckstrin homology) of a protein, a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signaling or as constituents of the cytoskeleton. |
| protein homodimerization activity | (GO:0042803) | molecular_function | Interacting selectively and non-covalently with an identical protein to form a homodimer. |
| obsolete protein homooligomerization activity | (GO:0042804) | molecular_function | OBSOLETE. Interacting selectively with identical proteins to form a homooligomer. This term was made obsolete because it represents a biological process. |
| fucose binding | (GO:0042806) | molecular_function | Interacting selectively and non-covalently with fucose, the pentose 6-deoxygalactose. |
| obsolete neuronal Cdc2-like kinase binding | (GO:0042808) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with neuronal Cdc2-like kinase, an enzyme involved in the regulation of neuronal differentiation and neuro-cytoskeleton dynamics. This term was made obsolete because it represents binding to an individual protein. |
| vitamin D receptor binding | (GO:0042809) | molecular_function | Interacting selectively and non-covalently with the vitamin D receptor, a nuclear receptor that mediates the action of vitamin D by binding DNA and controlling the transcription of hormone-sensitive genes. |
| histone deacetylase binding | (GO:0042826) | molecular_function | Interacting selectively and non-covalently with the enzyme histone deacetylase. |
| peptidoglycan binding | (GO:0042834) | molecular_function | Interacting selectively and non-covalently, in a non-covalent manner, with peptidoglycan, any of a class of glycoconjugates found in bacterial cell walls. |
| BRE binding | (GO:0042835) | molecular_function | Interacting selectively and non-covalently with the RNA element BRE (Bruno response element). |
| neuromedin U receptor binding | (GO:0042922) | molecular_function | Interacting selectively and non-covalently with one or more specific sites on a neuromedin U receptor. |
| neuropeptide binding | (GO:0042923) | molecular_function | Interacting selectively and non-covalently and stoichiometrically with neuropeptides, peptides with direct synaptic effects (peptide neurotransmitters) or indirect modulatory effects on the nervous system (peptide neuromodulators). |
| neuromedin U binding | (GO:0042924) | molecular_function | Interacting selectively and non-covalently and stoichiometrically with neuromedin U, a hypothalamic peptide involved in energy homeostasis and stress responses. |
| retinoic acid receptor binding | (GO:0042974) | molecular_function | Interacting selectively and non-covalently with the retinoic acid receptor, a ligand-regulated transcription factor belonging to the nuclear receptor superfamily. |
| peroxisome proliferator activated receptor binding | (GO:0042975) | molecular_function | Interacting selectively and non-covalently with any of the peroxisome proliferator activated receptors, alpha, beta or gamma. |
| obsolete cystic fibrosis transmembrane conductance regulator binding | (GO:0042980) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with the Cystic Fibrosis Transmembrane conductance Regulator (CFTR) protein. This term was made obsolete because it represents binding to an individual protein. |
| ion channel binding | (GO:0044325) | molecular_function | Interacting selectively and non-covalently with one or more specific sites on an ion channel, a protein complex that spans a membrane and forms a water-filled channel across the phospholipid bilayer allowing selective ion transport down its electrochemical gradient. |
| X11-like protein binding | (GO:0042988) | molecular_function | Interacting selectively and non-covalently with X11-like protein, a neuron-specific adaptor protein. |
| ATP-dependent protein binding | (GO:0043008) | molecular_function | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) using energy from the hydrolysis of ATP. |
| alpha-tubulin binding | (GO:0043014) | molecular_function | Interacting selectively and non-covalently with the microtubule constituent protein alpha-tubulin. |
| gamma-tubulin binding | (GO:0043015) | molecular_function | Interacting selectively and non-covalently with the microtubule constituent protein gamma-tubulin. |
| ribonucleoprotein complex binding | (GO:0043021) | molecular_function | Interacting selectively and non-covalently with any complex of RNA and protein. |
| ribosome binding | (GO:0043022) | molecular_function | Interacting selectively and non-covalently with any part of a ribosome. |
| ribosomal large subunit binding | (GO:0043023) | molecular_function | Interacting selectively and non-covalently with any part of the larger ribosomal subunit. |
| ribosomal small subunit binding | (GO:0043024) | molecular_function | Interacting selectively and non-covalently with any part of the small ribosomal subunit. |
| single-stranded telomeric DNA binding | (GO:0043047) | molecular_function | Interacting selectively and non-covalently with single-stranded telomere-associated DNA. |
| rDNA spacer replication fork barrier binding | (GO:0043110) | molecular_function | Interacting selectively and non-covalently with replication fork barriers found in rDNA spacers, sites that inhibit replication forks in the direction opposite to rDNA transcription. |
| tumor necrosis factor binding | (GO:0043120) | molecular_function | Interacting selectively and non-covalently with tumor necrosis factor, a proinflammatory cytokine produced by monocytes and macrophages. |
| ubiquitin binding | (GO:0043130) | molecular_function | Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation. |
| hindgut contraction | (GO:0043133) | biological_process | A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the hindgut. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The hindgut is the posterior part of the alimentary canal, including the rectum, and the large intestine. |
| ion binding | (GO:0043167) | molecular_function | Interacting selectively and non-covalently with ions, charged atoms or groups of atoms. |
| anion binding | (GO:0043168) | molecular_function | Interacting selectively and non-covalently with anions, charged atoms or groups of atoms with a net negative charge. |
| cation binding | (GO:0043169) | molecular_function | Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. |
| amine binding | (GO:0043176) | molecular_function | Interacting selectively and non-covalently with any organic compound that is weakly basic in character and contains an amino or a substituted amino group. |
| organic acid binding | (GO:0043177) | molecular_function | Interacting selectively and non-covalently with an organic acid, any acidic compound containing carbon in covalent linkage. |
| alcohol binding | (GO:0043178) | molecular_function | Interacting selectively and non-covalently with an alcohol, any of a class of alkyl compounds containing a hydroxyl group. |
| vascular endothelial growth factor receptor 1 binding | (GO:0043183) | molecular_function | Interacting selectively and non-covalently with vascular endothelial growth factor receptor 1. |
| vascular endothelial growth factor receptor 2 binding | (GO:0043184) | molecular_function | Interacting selectively and non-covalently with vascular endothelial growth factor receptor 2. |
| vascular endothelial growth factor receptor 3 binding | (GO:0043185) | molecular_function | Interacting selectively and non-covalently with vascular endothelial growth factor receptor 3. |
| sulfate binding | (GO:0043199) | molecular_function | Interacting selectively and non-covalently with sulfate, SO4(2-), a negatively charged small molecule. |
| glycosphingolipid binding | (GO:0043208) | molecular_function | Interacting selectively and non-covalently with glycosphingolipid, a compound with residues of sphingoid and at least one monosaccharide. |
| alkanesulfonate binding | (GO:0043210) | molecular_function | Interacting selectively and non-covalently with alkanesulfonates, the anion of alkanesulfonic acids, sulfonic acid derivatives containing an aliphatic hydrocarbon group. |
| SMC family protein binding | (GO:0043221) | molecular_function | Interacting selectively and non-covalently with any protein from the structural maintenance of chromosomes (SMC) family, a group of chromosomal ATPases with a role in mitotic chromosome organization. |
| laminin binding | (GO:0043236) | molecular_function | Interacting selectively and non-covalently with laminins, glycoproteins that are major constituents of the basement membrane of cells. |
| laminin-1 binding | (GO:0043237) | molecular_function | Interacting selectively and non-covalently with laminin-1, a glycoprotein trimer with the subunit composition alpha1, beta1, gamma1. |
| phospholipase binding | (GO:0043274) | molecular_function | Interacting selectively and non-covalently with any phospholipase, enzymes that catalyze of the hydrolysis of a glycerophospholipid. |
| poly(3-hydroxyalkanoate) binding | (GO:0043287) | molecular_function | Interacting selectively and non-covalently with poly(3-hydroxyalkanoate)s, polyesters of 3-hydroxyacids produced as intracellular granules by a large variety of bacteria. |
| glutathione binding | (GO:0043295) | molecular_function | Interacting selectively and non-covalently with glutathione; a tripeptide composed of the three amino acids cysteine, glutamic acid and glycine. |
| phosphatidylinositol-3,4-bisphosphate binding | (GO:0043325) | molecular_function | Interacting selectively and non-covalently with phosphatidylinositol-3,4-bisphosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3' and 4' positions. |
| proteoglycan binding | (GO:0043394) | molecular_function | Interacting selectively and non-covalently with a proteoglycan, any glycoprotein in which the carbohydrate units are glycosaminoglycans. |
| heparan sulfate proteoglycan binding | (GO:0043395) | molecular_function | Interacting selectively and non-covalently with a heparan sulfate proteoglycan, any proteoglycan containing heparan sulfate as the glycosaminoglycan carbohydrate unit. |
| HLH domain binding | (GO:0043398) | molecular_function | Interacting selectively and non-covalently with Helix Loop Helix, a domain of 40-50 residues that occurs in specific DNA-binding proteins that act as transcription factors. The domain is formed of two amphipathic helices joined by a variable length linker region that can form a loop and it mediates protein dimerization. |
| obsolete myopalladin binding | (GO:0043411) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with myopalladin, a myofibrillar protein with titin-like Ig domains. This term was made obsolete because it represents binding to an individual protein. |
| protein kinase B binding | (GO:0043422) | molecular_function | Interacting selectively and non-covalently with protein kinase B, an intracellular kinase that is important in regulating glucose metabolism. |
| 3-phosphoinositide-dependent protein kinase binding | (GO:0043423) | molecular_function | Interacting selectively and non-covalently with a 3-phosphoinositide-dependent protein kinase. |
| protein histidine kinase binding | (GO:0043424) | molecular_function | Interacting selectively and non-covalently with protein histidine kinase. |
| bHLH transcription factor binding | (GO:0043425) | molecular_function | Interacting selectively and non-covalently with any of the basic Helix-Loop-Helix (bHLH) superfamily of transcription factors, important regulatory components in transcriptional networks of many developmental pathways. |
| MRF binding | (GO:0043426) | molecular_function | Interacting selectively and non-covalently with Myogenic Regulatory Factor (MRF), a member of the basic Helix-Loop-Helix (bHLH) superfamily of transcription factors. |
| IgD binding | (GO:0043472) | molecular_function | Interacting selectively and non-covalently with an immunoglobulin of a D isotype. |
| protein membrane anchor | (GO:0043495) | molecular_function | Interacting selectively and non-covalently with both a protein or protein complex and a membrane, in order to maintain the localization of the protein at a specific membrane location. |
| regulation of protein homodimerization activity | (GO:0043496) | biological_process | Any process that modulates the frequency, rate or extent of protein homodimerization, interacting selectively with an identical protein to form a homodimer. |
| regulation of protein heterodimerization activity | (GO:0043497) | biological_process | Any process that modulates the frequency, rate or extent of protein heterodimerization, interacting selectively with a nonidentical protein to form a heterodimer. |
| obsolete cell surface binding | (GO:0043498) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with any component on the surface of a cell. This term was made obsolete because it is ambiguous and causing confusion, and is an unnecessary grouping term. |
| host cell surface binding | (GO:0046812) | molecular_function | Interacting selectively and non-covalently with the surface of a host cell. |
| obsolete eukaryotic cell surface binding | (GO:0043499) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with any component on the surface of a eukaryotic cell. This term was made obsolete because it is ambiguous and causing confusion, and is an unnecessary grouping term. |
| kinetochore binding | (GO:0043515) | molecular_function | Interacting selectively and non-covalently with a kinetochore, a proteinaceous structure on a condensed chromosome, beside the centromere, to which the spindle fibers are attached. |
| leucine zipper domain binding | (GO:0043522) | molecular_function | Interacting selectively and non-covalently with a leucine zipper domain, a protein secondary structure exhibiting a periodic repetition of leucine residues at every seventh position over a distance covering eight helical turns. |
| ADP binding | (GO:0043531) | molecular_function | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
| angiostatin binding | (GO:0043532) | molecular_function | Interacting selectively and non-covalently with angiostatin, a proteolytic product of plasminogen or plasmin containing at least one intact kringle domain, and which is an inhibitor of angiogenesis. |
| inositol 1,3,4,5 tetrakisphosphate binding | (GO:0043533) | molecular_function | Interacting selectively and non-covalently with inositol 1,3,4,5 tetrakisphosphate. |
| lipoamide binding | (GO:0043544) | molecular_function | Interacting selectively and non-covalently with lipoamide, the functional form of lipoic acid in which the carboxyl group is attached to protein by an amide linkage to a lysine amino group. |
| molybdopterin cofactor binding | (GO:0043546) | molecular_function | Interacting selectively and non-covalently with the molybdopterin cofactor (Moco), essential for the catalytic activity of some enzymes, e.g. sulfite oxidase, xanthine dehydrogenase, and aldehyde oxidase. The cofactor consists of a mononuclear molybdenum (Mo-molybdopterin) or tungsten ion (W-molybdopterin) coordinated by one or two molybdopterin ligands. |
| phosphatidylinositol 3-kinase binding | (GO:0043548) | molecular_function | Interacting selectively and non-covalently with a phosphatidylinositol 3-kinase, any enzyme that catalyzes the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring. |
| insulin binding | (GO:0043559) | molecular_function | Interacting selectively and non-covalently with insulin, a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms. |
| insulin receptor substrate binding | (GO:0043560) | molecular_function | Interacting selectively and non-covalently with any of the insulin receptor substrate (IRS) proteins, adaptor proteins that bind to the transphosphorylated insulin and insulin-like growth factor receptors, are themselves phosphorylated and in turn recruit SH2 domain-containing signaling molecules to form a productive signaling complex. |
| sequence-specific DNA binding | (GO:0043565) | molecular_function | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
| protein self-association | (GO:0043621) | molecular_function | Interacting selectively and non-covalently with a domain within the same polypeptide. |
| suramin binding | (GO:0043924) | molecular_function | Interacting selectively and non-covalently with suramin, a naphthalenesulfonic acid compound which is used in the treatment of diseases caused by trypanosomes and worms. |
| host cell filopodium | (GO:0044176) | cellular_component | Thin, stiff protrusion extended by the leading edge of a motile host cell such as a crawling fibroblast or amoeba, or an axonal growth cone; usually approximately 0.1 um wide, 5-10 um long, can be up to 50 um long in axon growth cones; contains a loose bundle of about 20 actin filaments oriented with their plus ends pointing outward. |
| Rel homology domain binding | (GO:0044197) | molecular_function | Interacting selectively and non-covalently with a Rel Homology Domain (RHD) of a protein. The RHD is found in a family of eukaryotic transcription factors, which includes NF-kappaB, Dorsal, Relish and NFAT. |
| zf-TRAF domain binding | (GO:0044198) | molecular_function | Interacting selectively and non-covalently with a TRAF-type zinc finger domain of a protein. |
| intronic transcription regulatory region DNA binding | (GO:0044213) | molecular_function | Interacting selectively and non-covalently with an intronic DNA region that regulates the transcription of the transcript it is contained within. |
| other organism | (GO:0044215) | cellular_component | A secondary organism with which the first organism is interacting. |
| other organism cell | (GO:0044216) | cellular_component | A cell of a secondary organism with which the first organism is interacting. |
| other organism part | (GO:0044217) | cellular_component | Any constituent part of a secondary organism with which the first organism is interacting. |
| other organism cell membrane | (GO:0044218) | cellular_component | The cell membrane of a secondary organism with which the first organism is interacting. |
| other organism membrane | (GO:0044279) | cellular_component | A membrane of a secondary organism with which the first organism is interacting. |
| retinoic acid-responsive element binding | (GO:0044323) | molecular_function | Interacting selectively and non-covalently with a retinoic acid-responsive element, a variable direct repeat of the sequence PuGGTCA spaced by five nucleotides (DR5) found in the promoters of retinoic acid-responsive genes, to which retinoic acid receptors bind. |
| cytokinin binding | (GO:0044373) | molecular_function | Interacting selectively and non-covalently with a cytokinin, any of a class of adenine-derived compounds that can function in plants as growth regulators. |
| RNA polymerase II proximal promoter sequence-specific DNA binding, bending | (GO:0044377) | molecular_function | Interacting selectively and non-covalently with a proximal promoter DNA sequence of a gene transcribed by RNA polymerase II, and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence. |
| small protein activating enzyme binding | (GO:0044388) | molecular_function | Interacting selectively and non-covalently with a small protein activating enzyme, such as ubiquitin-activating enzyme. |
| ubiquitin-like protein ligase binding | (GO:0044389) | molecular_function | Interacting selectively and non-covalently with a ubiquitin-like protein ligase, such as ubiquitin-ligase. |
| ubiquitin-like protein conjugating enzyme binding | (GO:0044390) | molecular_function | Interacting selectively and non-covalently with a ubiquitin-like protein conjugating enzyme such as ubiquitin conjugating enzyme. |
| cell cortex part | (GO:0044448) | cellular_component | Any constituent part of the cell cortex, the region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins. |
| contractile fiber part | (GO:0044449) | cellular_component | Any constituent part of a contractile fiber, a fiber composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle. |
| DNA topoisomerase binding | (GO:0044547) | molecular_function | Interacting selectively and non-covalently with a DNA topoisomerase. |
| S100 protein binding | (GO:0044548) | molecular_function | Interacting selectively and non-covalently with a S100 protein. S100 is a small calcium and zinc binding protein produced in astrocytes that is implicated in Alzheimer's disease, Down Syndrome and ALS. |
| GTP cyclohydrolase binding | (GO:0044549) | molecular_function | Interacting selectively and non-covalently with a GTP cyclohydrolase. |
| relaxation of smooth muscle | (GO:0044557) | biological_process | A process in which the extent of smooth muscle contraction is reduced. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length. |
| cellotriose binding | (GO:0044583) | molecular_function | Interacting selectively and non-covalently with cellotriose. |
| cellodextrin binding | (GO:0044584) | molecular_function | Interacting selectively and non-covalently with cellodextrin, a glucose polymer of 2 or more glucose monomers. |
| cellobiose binding | (GO:0044585) | molecular_function | Interacting selectively and non-covalently with cellobiose, a disaccharide that represents the basic repeating unit of cellulose. |
| cellotetraose binding | (GO:0044586) | molecular_function | Interacting selectively and non-covalently with cellotetraose, an oligosaccharide consisting of four glucose residues resulting from hydrolysis of cellulose. |
| cellopentaose binding | (GO:0044587) | molecular_function | Interacting selectively and non-covalently with cellopentaose, an oligosaccharide consisting of four glucose residues resulting from hydrolysis of cellulose. |
| laminaribiose binding | (GO:0044588) | molecular_function | Interacting selectively and non-covalently with laminaribiose, a disaccharide. |
| pectin binding | (GO:0044589) | molecular_function | Interacting selectively and non-covalently with pectin. |
| iron-sulfur-molybdenum cofactor binding | (GO:0044590) | molecular_function | Interacting selectively and non-covalently with iron molybdenum cofactor, the cofactor located at the active site of the molybdenum nitrogenase. |
| ACP phosphopantetheine attachment site binding | (GO:0044620) | molecular_function | Interacting selectively and non-covalently with the attachment site of the phosphopantetheine prosthetic group of an acyl carrier protein (ACP). |
| hemi-methylated DNA-binding | (GO:0044729) | molecular_function | Interacting selectively and non-covalently with double-stranded hemi-methylated DNA at replication foci (one strand methylated, while the other strand is unmethylated). Methylation of cytosine or adenine in DNA is an important mechanism for establishing stable heritable epigenetic marks. |
| bone sialoprotein binding | (GO:0044730) | molecular_function | Interacting selectively and non-covalently with a bone sialoprotein, an extracellular matrix glycoprotein found on the surface of bones and dentin. |
| protein-containing complex binding | (GO:0044877) | molecular_function | Interacting selectively and non-covalently with a macromolecular complex. |
| HDEL sequence binding | (GO:0045015) | molecular_function | Interacting selectively and non-covalently with a HDEL sequence, the C terminus tetrapeptide sequence His-Asp-Glu-Leu found in proteins that are to be retained in the endoplasmic reticulum. |
| DNA end binding | (GO:0045027) | molecular_function | Interacting selectively and non-covalently with the ends of DNA that are exposed by the creation of double-strand breaks (DSBs). |
| peroxisome inheritance | (GO:0045033) | biological_process | The acquisition of peroxisomes by daughter cells from the mother cell after replication. In Saccharomyces cerevisiae, the number of peroxisomes cells is fairly constant; a subset of the organelles are targeted and segregated to the bud in a highly ordered, vectorial process. Efficient segregation of peroxisomes from mother to bud is dependent on the actin cytoskeleton, and active movement of peroxisomes along actin filaments is driven by the class V myosin motor protein, Myo2p. |
| obsolete interleukin-18 alpha subunit binding | (GO:0045093) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with the alpha subunit of interleukin-18. IL-18a is a component of IL-18 that is essential for IL-18 binding on the surface of T-helper 1 cells. This term was obsoleted because interleukin-18 is a single polypeptide and has no subunits |
| obsolete interleukin-18 beta subunit binding | (GO:0045094) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with the beta subunit of interleukin-18. IL-18b is a ligand non-binding chain and is required for signaling of IL-18 that binds with IL-18a. This term was obsoleted because interleukin-18 is a single polypeptide and has no subunits. |
| pre-mRNA branch point binding | (GO:0045131) | molecular_function | Interacting selectively and non-covalently with a pre-mRNA branch point sequence, located upstream of the 3' splice site. |
| triplex DNA binding | (GO:0045142) | molecular_function | Interacting selectively and non-covalently with a DNA triple helix. The formation of triple helical DNA has been evoked in several cellular processes including transcription, replication, and recombination. |
| antisigma factor binding | (GO:0045152) | molecular_function | Interacting selectively and non-covalently with an antisigma factor, a factor which inhibits the ability of the sigma factor to function as a transcriptional initiator. |
| myosin II binding | (GO:0045159) | molecular_function | Interacting selectively and non-covalently with a class II myosin, any member of the class of 'conventional' double-headed myosins that includes muscle myosin. |
| obsolete low-density lipoprotein catabolic process | (GO:0045192) | biological_process | OBSOLETE. The chemical reactions and pathways resulting in the breakdown of low-density lipoproteins, also known as beta lipoproteins, one of the classes of lipoproteins found in the bloodstream of animals, acting as a carrier for cholesterol and fats. This term was made obsolete because low-density lipoprotein is a macromolecular complex, not a single class of molecule; its degradation involves the dissociation of non-covalently attached constituents as well as some breaking and reforming of covalent bonds. |
| CXCR chemokine receptor binding | (GO:0045236) | molecular_function | Interacting selectively and non-covalently with a chemokine receptor in the CXCR family. |
| CXCR1 chemokine receptor binding | (GO:0045237) | molecular_function | Interacting selectively and non-covalently with the CXCR1 chemokine receptor. |
| CXCR2 chemokine receptor binding | (GO:0045238) | molecular_function | Interacting selectively and non-covalently with the CXCR2 chemokine receptor. |
| alpha-catenin binding | (GO:0045294) | molecular_function | Interacting selectively and non-covalently with the alpha subunit of the catenin complex. |
| gamma-catenin binding | (GO:0045295) | molecular_function | Interacting selectively and non-covalently with the gamma subunit of the catenin complex. |
| cadherin binding | (GO:0045296) | molecular_function | Interacting selectively and non-covalently with cadherin, a type I membrane protein involved in cell adhesion. |
| protein phosphorylated amino acid binding | (GO:0045309) | molecular_function | Interacting selectively and non-covalently with a phosphorylated amino acid residue within a protein. |
| obsolete phosphoserine/phosphothreonine binding | (GO:0045310) | molecular_function | OBSOLETE. Interacting selectively with a phosphorylated serine or threonine residue within a protein. This term was made obsolete because it represents two functions. |
| phosphoserine residue binding | (GO:0050815) | molecular_function | Interacting selectively and non-covalently with a phosphorylated serine residue within a protein. |
| phosphothreonine residue binding | (GO:0050816) | molecular_function | Interacting selectively and non-covalently with a phosphorylated threonine residue within a protein. |
| unmethylated CpG binding | (GO:0045322) | molecular_function | Interacting selectively and non-covalently with unmethylated CpG motifs. Unmethylated CpG dinucleotides are often associated with gene promoters. |
| mercury ion binding | (GO:0045340) | molecular_function | Interacting selectively and non-covalently with mercury (Hg) ions. |
| dynein light chain binding | (GO:0045503) | molecular_function | Interacting selectively and non-covalently with a light chain of the dynein complex. |
| dynein heavy chain binding | (GO:0045504) | molecular_function | Interacting selectively and non-covalently with a heavy chain of the dynein complex. |
| dynein intermediate chain binding | (GO:0045505) | molecular_function | Interacting selectively and non-covalently with an intermediate chain of the dynein complex. |
| interleukin-24 binding | (GO:0045510) | molecular_function | Interacting selectively and non-covalently with interleukin-24. |
| interleukin-25 binding | (GO:0045511) | molecular_function | Interacting selectively and non-covalently with interleukin-25. |
| interleukin-26 binding | (GO:0045512) | molecular_function | Interacting selectively and non-covalently with interleukin-26. |
| interleukin-27 binding | (GO:0045513) | molecular_function | Interacting selectively and non-covalently with interleukin-27. |
| interleukin-16 receptor binding | (GO:0045514) | molecular_function | Interacting selectively and non-covalently with the interleukin-16 receptor. |
| interleukin-18 receptor binding | (GO:0045515) | molecular_function | Interacting selectively and non-covalently with the interleukin-18 receptor. |
| interleukin-19 receptor binding | (GO:0045516) | molecular_function | Interacting selectively and non-covalently with the interleukin-19 receptor. |
| interleukin-20 receptor binding | (GO:0045517) | molecular_function | Interacting selectively and non-covalently with the interleukin-20 receptor. |
| interleukin-22 receptor binding | (GO:0045518) | molecular_function | Interacting selectively and non-covalently with the interleukin-22 receptor. |
| interleukin-23 receptor binding | (GO:0045519) | molecular_function | Interacting selectively and non-covalently with the interleukin-23 receptor. |
| interleukin-24 receptor binding | (GO:0045520) | molecular_function | Interacting selectively and non-covalently with the interleukin-24 receptor. |
| interleukin-25 receptor binding | (GO:0045521) | molecular_function | Interacting selectively and non-covalently with the interleukin-25 receptor. |
| interleukin-26 receptor binding | (GO:0045522) | molecular_function | Interacting selectively and non-covalently with the interleukin-26 receptor. |
| interleukin-27 receptor binding | (GO:0045523) | molecular_function | Interacting selectively and non-covalently with the interleukin-27 receptor. |
| syndecan binding | (GO:0045545) | molecular_function | Interacting selectively and non-covalently with syndecan, an integral membrane proteoglycan (250-300 kDa) associated largely with epithelial cells. |
| TRAIL binding | (GO:0045569) | molecular_function | Interacting selectively and non-covalently with TRAIL (TNF-related apoptosis inducing ligand), a member of the tumor necrosis factor ligand family that rapidly induces apoptosis in a variety of transformed cell lines. |
| SMAD binding | (GO:0046332) | molecular_function | Interacting selectively and non-covalently with a SMAD signaling protein. |
| sphingolipid binding | (GO:0046625) | molecular_function | Interacting selectively and non-covalently with sphingolipids, a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid). |
| natural killer cell lectin-like receptor binding | (GO:0046703) | molecular_function | Interacting selectively and non-covalently with a lectin-like natural killer cell receptor. |
| borate binding | (GO:0046714) | molecular_function | Interacting selectively and non-covalently with borate, the anion (BO3)3-. |
| virion binding | (GO:0046790) | molecular_function | Interacting selectively and non-covalently with a virion, either by binding to components of the capsid or the viral envelope. |
| host cell extracellular matrix binding | (GO:0046810) | molecular_function | Interacting selectively and non-covalently with the extracellular matrix of a host cell. |
| hydroxyapatite binding | (GO:0046848) | molecular_function | Interacting selectively and non-covalently with hydroxyapatite, the calcium phosphate mineral of formula Ca10(PO4)6(OH)2 found both in rocks of nonorganic origin and as a component of bone and dentin. |
| calcium oxalate binding | (GO:0046904) | molecular_function | Interacting selectively and non-covalently with calcium oxalate, CaC2O4, a salt of oxalic acid. In animals, it may be excreted in urine or retained in the form of urinary calculi. |
| tetrapyrrole binding | (GO:0046906) | molecular_function | Interacting selectively and non-covalently with a tetrapyrrole, a compound containing four pyrrole nuclei variously substituted and linked to each other through carbons at the alpha position. |
| transition metal ion binding | (GO:0046914) | molecular_function | Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. |
| ER retention sequence binding | (GO:0046923) | molecular_function | Interacting selectively and non-covalently with an endoplasmic reticulum (ER) retention sequence, a specific peptide sequence that ensures a protein is retained within the ER. |
| retinoid X receptor binding | (GO:0046965) | molecular_function | Interacting selectively and non-covalently with a retinoid X receptor. |
| TAP binding | (GO:0046977) | molecular_function | Interacting selectively and non-covalently with TAP protein, transporter associated with antigen processing protein. TAP protein is a heterodimeric peptide transporter consisting of the subunits TAP1 and TAP2. |
| TAP1 binding | (GO:0046978) | molecular_function | Interacting selectively and non-covalently with the TAP1 subunit of TAP (transporter associated with antigen processing) protein. |
| TAP2 binding | (GO:0046979) | molecular_function | Interacting selectively and non-covalently with the TAP2 subunit of TAP (transporter associated with antigen processing) protein. |
| tapasin binding | (GO:0046980) | molecular_function | Interacting selectively and non-covalently with tapasin, a member of the MHC class I loading complex which bridges the TAP peptide transporter to class I molecules. |
| protein heterodimerization activity | (GO:0046982) | molecular_function | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
| protein N-terminus binding | (GO:0047485) | molecular_function | Interacting selectively and non-covalently with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue. |
| CCR chemokine receptor binding | (GO:0048020) | molecular_function | Interacting selectively and non-covalently with a CCR chemokine receptor. |
| mRNA 5'-UTR binding | (GO:0048027) | molecular_function | Interacting selectively and non-covalently with the 5' untranslated region of an mRNA molecule. |
| galacturonan binding | (GO:0048028) | molecular_function | Interacting selectively and non-covalently with any simple or complex galacturonan. Galacturonan is any glycan composed solely of galacturonic acid residues, a specific type of glycuronan, and a constituent of some pectins. |
| monosaccharide binding | (GO:0048029) | molecular_function | Interacting selectively and non-covalently with any monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides. |
| disaccharide binding | (GO:0048030) | molecular_function | Interacting selectively and non-covalently with any disaccharide. Disaccharides are sugars composed of two monosaccharide units. |
| trisaccharide binding | (GO:0048031) | molecular_function | Interacting selectively and non-covalently with any trisaccharide. Trisaccharides are sugars composed of three monosaccharide units. |
| galacturonate binding | (GO:0048032) | molecular_function | Interacting selectively and non-covalently with any galacturonate. Galacturonate is the anion of galacturonic acid, the uronic acid formally derived from galactose by oxidation of the hydroxymethylene group at C-6 to a carboxyl group. |
| cofactor binding | (GO:0048037) | molecular_function | Interacting selectively and non-covalently with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate. |
| quinone binding | (GO:0048038) | molecular_function | Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds. |
| ubiquinone binding | (GO:0048039) | molecular_function | Interacting selectively and non-covalently with ubiquinone, a quinone derivative with a tail of isoprene units. |
| focal adhesion assembly | (GO:0048041) | biological_process | The aggregation and bonding together of a set of components to form a focal adhesion, a complex of intracellular signaling and structural proteins that provides a structural link between the internal actin cytoskeleton and the ECM, and also function as a locus of signal transduction activity. |
| tau protein binding | (GO:0048156) | molecular_function | Interacting selectively and non-covalently with tau protein. tau is a microtubule-associated protein, implicated in Alzheimer's disease, Down Syndrome and ALS. |
| obsolete follistatin binding | (GO:0048184) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with the peptide hormone follistatin. This term was made obsolete because it represents binding to an individual protein. |
| activin binding | (GO:0048185) | molecular_function | Interacting selectively and non-covalently with activin, a dimer of inhibin-beta subunits. |
| CXCR3 chemokine receptor binding | (GO:0048248) | molecular_function | Interacting selectively and non-covalently with a the CXCR3 chemokine receptor. |
| mitogen-activated protein kinase p38 binding | (GO:0048273) | molecular_function | Interacting selectively and non-covalently with mitogen-activated protein kinase p38, an enzyme that catalyzes the transfer of phosphate from ATP to hydroxyl side chains on proteins in response to mitogen activation. |
| calcium-dependent protein binding | (GO:0048306) | molecular_function | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium. |
| Rac GTPase binding | (GO:0048365) | molecular_function | Interacting selectively and non-covalently with Rac protein, any member of the Rac subfamily of the Ras superfamily of monomeric GTPases. |
| platelet-derived growth factor binding | (GO:0048407) | molecular_function | Interacting selectively and non-covalently with platelet-derived growth factor. |
| epidermal growth factor binding | (GO:0048408) | molecular_function | Interacting selectively and non-covalently with epidermal growth factor. |
| beta-tubulin binding | (GO:0048487) | molecular_function | Interacting selectively and non-covalently with the microtubule constituent protein beta-tubulin. |
| obsolete GPI anchor binding | (GO:0048503) | molecular_function | OBSOLETE. Interacting selectively with any glycosylphosphatidylinositol anchor. GPI anchors serve to attach membrane proteins to the lipid bilayer of cell membranes. This term was made obsolete because it has been widely, and incorrectly, used to annotate proteins that have GPI anchors covalently attached. A new term has been created that can be used to annotate gene products that interact non-covalently with GPI anchors. |
| system development | (GO:0048731) | biological_process | The process whose specific outcome is the progression of an organismal system over time, from its formation to the mature structure. A system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a given biological process. |
| microfibril binding | (GO:0050436) | molecular_function | Interacting selectively and non-covalently with a microfibril, any small fibril occurring in biological material. |
| icosanoid binding | (GO:0050542) | molecular_function | Interacting selectively and non-covalently with icosanoids, any C20 polyunsaturated fatty acids or their derivatives, including the leukotrienes and the prostanoids. |
| icosatetraenoic acid binding | (GO:0050543) | molecular_function | Interacting selectively and non-covalently with icosatetraenoic acid, any straight-chain fatty acid with twenty carbon atoms and four double bonds per molecule. |
| arachidonic acid binding | (GO:0050544) | molecular_function | Interacting selectively and non-covalently with arachidonic acid, a straight chain fatty acid with 20 carbon atoms and four double bonds per molecule. Arachidonic acid is the all-Z-(5,8,11,14)-isomer. |
| 5-oxo-6E,8Z,11Z,14Z-icosatetraenoic acid binding | (GO:0050646) | molecular_function | Interacting selectively and non-covalently with 5-oxo-6E,8Z,11Z,14Z-icosatetraenoic acid, a straight-chain fatty acid with twenty carbon atoms and four double bonds. |
| 5-hydroxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding | (GO:0050647) | molecular_function | Interacting selectively and non-covalently with 5-hydroxy-6E,8Z,11Z,14Z-icosatetraenoic acid, a straight-chain fatty acid with twenty carbon atoms and four double bonds. |
| 5(S)-hydroxyperoxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding | (GO:0050648) | molecular_function | Interacting selectively and non-covalently with 5(S)-hydroxyperoxy-6E,8Z,11Z,14Z-icosatetraenoic acid, a straight-chain fatty acid with twenty carbon atoms and four double bonds. |
| 3'-phosphoadenosine 5'-phosphosulfate binding | (GO:0050656) | molecular_function | Interacting selectively and non-covalently with 3'-phosphoadenosine 5'-phosphosulfate (PAPS), a naturally occurring mixed anhydride. It is an intermediate in the formation of a variety of sulfo compounds in biological systems. |
| flavin adenine dinucleotide binding | (GO:0050660) | molecular_function | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. |
| NADP binding | (GO:0050661) | molecular_function | Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH. |
| coenzyme binding | (GO:0050662) | molecular_function | Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. |
| androgen receptor binding | (GO:0050681) | molecular_function | Interacting selectively and non-covalently with an androgen receptor. |
| AF-2 domain binding | (GO:0050682) | molecular_function | Interacting selectively and non-covalently with the AF-2 domain of a protein, a highly conserved ligand-dependent transactivation domain which is essential for receptor-mediated transcriptional activation. |
| AF-1 domain binding | (GO:0050683) | molecular_function | Interacting selectively and non-covalently with the AF-1 domain of a protein, a ligand-independent transactivation domain which is required for the full transcriptional activity of the receptor. |
| DBD domain binding | (GO:0050692) | molecular_function | Interacting selectively and non-covalently with the DBD, DNA binding domain, of a protein. The DNA binding domain of the vitamin D receptor, one of a family of receptors with the DBD, is split into three regions, the P, D and T boxes. Residues that are critical for target sequence selectivity form the P-box. The D-box contains residues that are important for homodimerization of class I nuclear receptors. The T-box is essential for both DNA-binding and transactivation of the VDR; this region may also be important for dimerization with RXR for class II nuclear receptors. |
| LBD domain binding | (GO:0050693) | molecular_function | Interacting selectively and non-covalently with the LBD, the ligand binding domain found in nuclear receptors. In general, the LBDs consist of three layers comprised of twelve alpha-helices and several beta-strands that are organized around a lipophilic ligand-binding pocket. |
| WW domain binding | (GO:0050699) | molecular_function | Interacting selectively and non-covalently with a WW domain of a protein, a small module composed of 40 amino acids and plays a role in mediating protein-protein interactions via proline-rich regions. |
| CARD domain binding | (GO:0050700) | molecular_function | Interacting selectively and non-covalently with a CARD (N-terminal caspase recruitment) domain, a protein-protein interaction domain that belongs to the death domain-fold superfamily. These protein molecule families are similar in structure with each consisting of six or seven anti-parallel alpha-helices that form highly specific homophilic interactions between signaling partners. CARD exists in the N-terminal prodomains of several caspases and in apoptosis-regulatory proteins and mediates the assembly of CARD-containing proteins that participate in activation or suppression of CARD carrying members of the caspase family. |
| RS domain binding | (GO:0050733) | molecular_function | Interacting selectively and non-covalently with an RS domain of a protein; RS domains are usually highly phosphorylated and characterized by the presence of arginine (R)/serine (S) dipeptides. The RS domain promotes protein-protein interactions and directs subcellular localization and, in certain situations, nucleocytoplasmic shuttling of individual SR proteins. They also play a role in splicing. |
| obsolete apolipoprotein E receptor binding | (GO:0050749) | molecular_function | OBSOLETE. Interacting selectively with an apolipoprotein E receptor. This term was made obsolete because no known receptor binds apolipoprotein E; instead, receptors bind holo-lipoprotein E (apolipoprotein E + bound lipid). |
| very-low-density lipoprotein particle receptor binding | (GO:0070326) | molecular_function | Interacting selectively and non-covalently with a very-low-density lipoprotein receptor. |
| low-density lipoprotein particle receptor binding | (GO:0050750) | molecular_function | Interacting selectively and non-covalently with a low-density lipoprotein receptor. |
| dopamine receptor binding | (GO:0050780) | molecular_function | Interacting selectively and non-covalently with a dopamine receptor. |
| RAGE receptor binding | (GO:0050786) | molecular_function | Interacting selectively and non-covalently with the RAGE receptor, the receptor for advanced glycation end-products. |
| water binding | (GO:0050824) | molecular_function | Interacting selectively and non-covalently with water (H2O). |
| cobalt ion binding | (GO:0050897) | molecular_function | Interacting selectively and non-covalently with a cobalt (Co) ion. |
| quaternary ammonium group binding | (GO:0050997) | molecular_function | Interacting selectively and non-covalently with a quaternary ammonium group, including glycine betaine, choline, carnitine and proline. A quaternary ammonium group is any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups. |
| nitric-oxide synthase binding | (GO:0050998) | molecular_function | Interacting selectively and non-covalently with the enzyme nitric-oxide synthase. |
| microtubule plus-end binding | (GO:0051010) | molecular_function | Interacting selectively and non-covalently with the plus end of a microtubule. |
| microtubule minus-end binding | (GO:0051011) | molecular_function | Interacting selectively and non-covalently with the minus end of a microtubule. |
| GTPase binding | (GO:0051020) | molecular_function | Interacting selectively and non-covalently with a GTPase, any enzyme that catalyzes the hydrolysis of GTP. |
| GDP-dissociation inhibitor binding | (GO:0051021) | molecular_function | Interacting selectively and non-covalently with a GDP-dissociation inhibitor protein. |
| Rho GDP-dissociation inhibitor binding | (GO:0051022) | molecular_function | Interacting selectively and non-covalently with a Rho GDP-dissociation inhibitor protein. |
| NF-kappaB binding | (GO:0051059) | molecular_function | Interacting selectively and non-covalently with NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters. |
| ATPase binding | (GO:0051117) | molecular_function | Interacting selectively and non-covalently with an ATPase, any enzyme that catalyzes the hydrolysis of ATP. |
| prosthetic group binding | (GO:0051192) | molecular_function | Interacting selectively and non-covalently with a prosthetic group, the non-amino acid portion of certain protein molecules. Prosthetic groups may be inorganic or organic and are usually required for the biological activity of the protein. |
| vanadium ion binding | (GO:0051212) | molecular_function | Interacting selectively and non-covalently with vanadium (V) ions. |
| phosphoprotein binding | (GO:0051219) | molecular_function | Interacting selectively and non-covalently with a phosphorylated protein. |
| NAD binding | (GO:0051287) | molecular_function | Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. |
| regulation of lyase activity | (GO:0051339) | biological_process | Any process that modulates the frequency, rate or extent of lyase activity, the catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. |
| obsolete ZASP binding | (GO:0051370) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with Z-band alternatively spliced PDZ motif protein (ZASP). ZASP is a Z-band protein specifically expressed in heart and skeletal muscle. This protein contains N-terminal PDZ domain and C-terminal LIM domain. This term was made obsolete because it represents binding to an individual protein. |
| serotonin binding | (GO:0051378) | molecular_function | Interacting selectively and non-covalently with serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties. |
| epinephrine binding | (GO:0051379) | molecular_function | Interacting selectively and non-covalently with epinephrine, a hormone produced by the medulla of the adrenal glands that increases heart activity, improves the power and prolongs the action of muscles, and increases the rate and depth of breathing. It is synthesized by the methylation of norepinephrine. |
| norepinephrine binding | (GO:0051380) | molecular_function | Interacting selectively and non-covalently with norepinephrine, (3,4-dihydroxyphenyl-2-aminoethanol), a hormone secreted by the adrenal medulla and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts of the CNS. It is also the biosynthetic precursor of epinephrine. |
| histamine binding | (GO:0051381) | molecular_function | Interacting selectively and non-covalently with histamine, a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans. |
| BH domain binding | (GO:0051400) | molecular_function | Interacting selectively and non-covalently with the Bcl-2 homology (BH) domain of a protein. Bcl-2-related proteins share homology in one to four conserved regions designated the Bcl-2 homology (BH) domains BH1, BH2, BH3 and BH4. These domains contribute at multiple levels to the function of these proteins in cell death and survival. Anti-apoptotic members of the Bcl-2 family have four BH domains (BH1-BH4). Pro-apoptotic members have fewer BH domains. |
| CH domain binding | (GO:0051401) | molecular_function | Interacting selectively and non-covalently with the calponin homology domain of a protein, a domain of 100 residues that occurs in signaling and cytoskeletal proteins. |
| obsolete myotilin binding | (GO:0051416) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with myotilin, a structural component of the Z-discs in human skeletal and cardiac muscle. Its C-terminus contains two immunoglobulin-like domains and the unique N-terminal half has a serine-rich region, with numerous potential phosphorylation sites, and a stretch of hydrophobic amino acids. Myotilin forms homodimers and binds to alpha-actinin, F-actin, and filamin C. This term was made obsolete because it represents binding to an individual protein. |
| obsolete nebulin binding | (GO:0051419) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with nebulin, a large protein (approximately 800kD) that is anchored at the Z-disc by its C-terminal region and spans the length of the thin filament, ending at the edge of the H-zone. This term was made obsolete because it represents binding to an individual protein. |
| obsolete nebulette binding | (GO:0051420) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with nebulette, a 107 kDa protein associated with the I-Z-I complex of cardiac myofibrils. It shows a high degree of homology with skeletal muscle nebulin. This term was made obsolete because it represents binding to an individual protein. |
| corticotropin-releasing hormone binding | (GO:0051424) | molecular_function | Interacting selectively and non-covalently with corticotropin-releasing hormone, a polypeptide hormone involved in the stress response. It is released by the hypothalamus and stimulates the release of corticotropin by the anterior pituitary gland. |
| hormone receptor binding | (GO:0051427) | molecular_function | Interacting selectively and non-covalently with a receptor for hormones. |
| peptide hormone receptor binding | (GO:0051428) | molecular_function | Interacting selectively and non-covalently with a receptor for peptide hormones. |
| corticotropin-releasing hormone receptor binding | (GO:0051429) | molecular_function | Interacting selectively and non-covalently with a receptor for corticotropin-releasing hormone (CRH), a polypeptide hormone involved in the stress response. It is released by the hypothalamus and stimulates the release of corticotropin by the anterior pituitary gland. |
| corticotropin-releasing hormone receptor 1 binding | (GO:0051430) | molecular_function | Interacting selectively and non-covalently with the corticotropin-releasing hormone receptor 1 (CRHR1). CRHR1 is the major subtype in the pituitary corticotroph, and mediates the stimulatory actions of corticotropin-releasing hormone on corticotropin hormone secretion. CRHR1 are also located in cortical areas of the brain, cerebellum and limbic system. |
| corticotropin-releasing hormone receptor 2 binding | (GO:0051431) | molecular_function | Interacting selectively and non-covalently with the corticotropin-releasing hormone receptor type 2 (CRHR2). The CRHR2 has several splice variants that are located in sub-cortical areas of the brain and in the periphery. |
| BH1 domain binding | (GO:0051432) | molecular_function | Interacting selectively and non-covalently with the BH1 domain of a protein of the Bcl-2 family. Proteins that act as inhibitors of apoptosis harbour at least three BH domains: BH1, BH2 and BH3; the BH1 and BH2 domains are found in all death antagonists of the Bcl-2 family but only in one class of death agonists. |
| BH2 domain binding | (GO:0051433) | molecular_function | Interacting selectively and non-covalently with the BH2 domain of a protein of the Bcl-2 family. Proteins that act as inhibitors of apoptosis harbour at least three BH domains: BH1, BH2 and BH3; the BH1 and BH2 domains are found in all death antagonists of the Bcl-2 family but only in one class of death agonists. |
| BH3 domain binding | (GO:0051434) | molecular_function | Interacting selectively and non-covalently with the BH3 domain of a protein of the Bcl-2 family. The BH3 domain is a potent death domain and has an important role in protein-protein interactions and in cell death. |
| BH4 domain binding | (GO:0051435) | molecular_function | Interacting selectively and non-covalently with the BH4 domain of a protein of the Bcl-2 family. All anti-apoptotic proteins contain BH1 and BH2 domains; some also contain an additional N-terminal BH4 domain, which is almost never seen in pro-apoptotic proteins. Loss of the BH4 domain can diminish or abrogate anti-apoptotic function or even impart outright death-promoting properties to the protein. |
| gonadotropin-releasing hormone binding | (GO:0051448) | molecular_function | Interacting selectively and non-covalently with gonadotropin-releasing hormone (GnRH), a peptide hormone responsible for the release of follicle-stimulating hormone (FSH) and luteinizing hormone (LH) from the anterior pituitary. GnRH is synthesized and released by the hypothalamus. |
| thyrotropin-releasing hormone binding | (GO:0051449) | molecular_function | Interacting selectively and non-covalently with thyrotropin-releasing hormone, a tripeptide hormone that stimulates the release of thyroid-stimulating hormone (TSH) and prolactin by the anterior pituitary and it is produced by the hypothalamus and travels across the median eminence to the pituitary via the pituitary portal system. |
| NFAT protein binding | (GO:0051525) | molecular_function | Interacting selectively and non-covalently with NFAT (nuclear factor of activated T cells) proteins, a family of transcription factors. NFAT proteins have crucial roles in the development and function of the immune system. |
| iron-sulfur cluster binding | (GO:0051536) | molecular_function | Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. |
| 2 iron, 2 sulfur cluster binding | (GO:0051537) | molecular_function | Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. |
| 3 iron, 4 sulfur cluster binding | (GO:0051538) | molecular_function | Interacting selectively and non-covalently with a 3 iron, 4 sulfur (3Fe-4S) cluster; this cluster consists of three iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. It is essentially a 4Fe-4S cluster with one iron missing. |
| 4 iron, 4 sulfur cluster binding | (GO:0051539) | molecular_function | Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. |
| metal cluster binding | (GO:0051540) | molecular_function | Interacting selectively and non-covalently with a cluster of atoms including both metal ions and nonmetal atoms, usually sulfur and oxygen. Examples include iron-sulfur clusters and nickel-iron-sulfur clusters. |
| response to hydrostatic pressure | (GO:0051599) | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrostatic pressure stimulus. Hydrostatic pressure is the force acting on an object in a system where the fluid is at rest (as opposed to moving). The weight of the fluid above the object creates pressure on it. |
| obsolete bacterial cell surface binding | (GO:0051635) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with any component on the surface of a bacterial cell. This term was made obsolete because it is ambiguous and causing confusion, and is an unnecessary grouping term. |
| obsolete Gram-negative bacterial cell surface binding | (GO:0051636) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with any component on the surface of a Gram-negative bacterial cell. This term was made obsolete because it is an unnecessary grouping term and was causing confusion. |
| obsolete Gram-positive bacterial cell surface binding | (GO:0051637) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with any component on the surface of a Gram-positive bacterium. This term was made obsolete because it is an unnecessary grouping term and was causing confusion. |
| protein phosphatase 2A binding | (GO:0051721) | molecular_function | Interacting selectively and non-covalently with the enzyme protein phosphatase 2A. |
| xanthophyll binding | (GO:0051738) | molecular_function | Interacting selectively and non-covalently with xanthophylls, any of several neutral yellow to orange carotenoid pigments containing oxygen. |
| ethylene binding | (GO:0051740) | molecular_function | Interacting selectively and non-covalently with ethylene (C2-H4, ethene), a simple hydrocarbon gas that can function in plants as a growth regulator. |
| glycolipid binding | (GO:0051861) | molecular_function | Interacting selectively and non-covalently with a glycolipid, any compound containing one or more monosaccharide residues bound by a glycosidic linkage to a hydrophobic group such as an acylglycerol, a sphingoid, a ceramide (N-acylsphingoid) or a prenyl phosphate. |
| methotrexate binding | (GO:0051870) | molecular_function | Interacting selectively and non-covalently with methotrexate, an antineoplastic antimetabolite with immunosuppressant properties. It is an inhibitor of tetrahydrofolate reductase and prevents the formation of tetrahydrofolate, necessary for synthesis of thymidylate, an essential component of DNA. |
| dihydrofolic acid binding | (GO:0051871) | molecular_function | Interacting selectively and non-covalently with dihydrofolic acid, a folic acid in which the bicyclic pteridine structure is in the dihydro, partially reduced form; they are intermediates in folate metabolism and are reduced to their tetrahydro, reduced forms. |
| G-quadruplex DNA binding | (GO:0051880) | molecular_function | Interacting selectively and non-covalently with G-quadruplex DNA structures, in which groups of four guanines adopt a flat, cyclic Hoogsteen hydrogen-bonding arrangement known as a guanine tetrad. The stacking of guanine tetrads results in G-quadruplex DNA structures. G-quadruplex DNA can form under physiological conditions from some G-rich sequences, such as those found in telomeres, immunoglobulin switch regions, gene promoters, fragile X repeats, and the dimerization domain in the human immunodeficiency virus (HIV) genome. |
| granulocyte colony-stimulating factor binding | (GO:0051916) | molecular_function | Interacting selectively and non-covalently with granulocyte colony-stimulating factor, G-CSF. |
| dynein light intermediate chain binding | (GO:0051959) | molecular_function | Interacting selectively and non-covalently with a light intermediate chain of the dynein complex. |
| adiponectin binding | (GO:0055100) | molecular_function | Interacting selectively and non-covalently with adiponectin, a protein hormone produced by adipose tissue that modulates a number of metabolic processes, including glucose regulation and fatty acid catabolism. |
| C3HC4-type RING finger domain binding | (GO:0055131) | molecular_function | Interacting selectively and non-covalently with a C3HC4-type zinc finger domain of a protein. The C3HC4-type zinc finger is a variant of RING finger, is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid. Many proteins containing a C3HC4-type RING finger play a key role in the ubiquitination pathway. |
| auditory receptor cell stereocilium organization | (GO:0060088) | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a stereocilium. A stereocilium is an actin-based protrusion from the apical surface of auditory hair cells. |
| kinocilium | (GO:0060091) | cellular_component | A nonmotile primary cilium that is found at the apical surface of auditory receptor cells. The kinocilium is surrounded by actin-based stereocilia. |
| annular furrow extracellular matrix | (GO:0060108) | cellular_component | The extracellular matrix part that is a regularly spaced indentation in the outer cortical layer of the cuticle. The pattern of annular furrows corresponds to sites of invaginations in hypodermal cell membranes that, in turn, correspond to submembranous regions where actin microfilament bundles assemble early in lethargus, the first phase of the molting cycle in which activity and feeding decline. |
| vestibular receptor cell stereocilium organization | (GO:0060121) | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a stereocilium. A stereocilium is an actin-based protrusion from the apical surface of vestibular hair cells. |
| inner ear receptor cell stereocilium organization | (GO:0060122) | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a stereocilium. A stereocilium is an actin-based protrusion from the apical surface of inner ear receptor cells. |
| protein localization involved in acrosome reaction | (GO:0060476) | biological_process | The actin-based process in which a protein is transported to, or maintained in, a specific location in the sperm as part of the acrosome reaction. |
| muscle tissue development | (GO:0060537) | biological_process | The progression of muscle tissue over time, from its initial formation to its mature state. Muscle tissue is a contractile tissue made up of actin and myosin fibers. |
| positive regulation of transcription from RNA polymerase II promoter in response to hydrostatic pressure | (GO:0061405) | biological_process | Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hydrostatic pressure stimulus. Hydrostatic pressure is the force acting on an object in a system where the fluid is at rest (as opposed to moving). The weight of the fluid above the object creates pressure on it. |
| cyclic-GMP-AMP binding | (GO:0061507) | molecular_function | Interacting selectively and non-covalently with cyclic-GMP-AMP (cGAMP) cyclic nucleotide. |
| H3K27me3 modified histone binding | (GO:0061628) | molecular_function | Interacting selectively and non-covalently with a histone H3 in which the lysine residue at position 27 has been modified by trimethylation. |
| RNA polymerase II sequence-specific DNA-binding transcription factor binding | (GO:0061629) | molecular_function | Interacting selectively and non-covalently with a sequence-specific DNA binding RNA polymerase II transcription factor, any of the factors that interact selectively and non-covalently with a specific DNA sequence in order to modulate transcription. |
| ubiquitin modification-dependent histone binding | (GO:0061649) | molecular_function | Interacting selectively and non-covalently with a histone protein in which a residue has been modified by ubiquitination. Histones are any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. |
| RBL family protein binding | (GO:0061675) | molecular_function | Interacting selectively and non-covalently with any member of the rhamnose-binding lectin (RBL) family, a family of animal lectins that show specific binding activities to L-rhamnose or D-galactose. |
| importin-alpha family protein binding | (GO:0061676) | molecular_function | Interacting selectively and non-covalently with any member of the importin-alpha family. |
| GATOR2 complex | (GO:0061700) | cellular_component | A multiprotein subcomplex of GATOR that regulates mTOR signaling by interacting with the Rag GTPases. In humans this complex consists of Mios, WDR24, WDR59, Seh1L, Sec13. |
| C-rich strand telomeric DNA binding | (GO:0061730) | molecular_function | Interacting selectively and non-covalently with C-rich, single-stranded, telomere-associated DNA. |
| telomeric repeat-containing RNA binding | (GO:0061752) | molecular_function | Interacting selectively and non-covalently with long non-coding RNA molecules transcribed from subtelomeric regions in most eukaryotes. Telomeric repeat-containing RNA (TERRA) molecules consist of subtelomeric-derived sequences and G-rich telomeric repeats. |
| alpha-latrotoxin receptor binding | (GO:0061761) | molecular_function | Interacting selectively and non-covalently with an alpha-latrotoxin receptor. |
| translation elongation factor binding | (GO:0061770) | molecular_function | Interacting selectively and non-covalently with a translation elongation factor, any polypeptide factor involved in the peptide elongation in ribosome-mediated translation. |
| EGF repeat binding | (GO:0061788) | molecular_function | Interacting selectively and non-covalently with Epidermal Growth Factor (EGF) repeats. |
| obsolete ARID domain binding | (GO:0061813) | molecular_function | Interacting selectively and non-covalently with a ARID domain. The AT-rich interaction domain (ARID) is an ~100-amino acid DNA-binding module found in a large number of eukaryotic transcription factors. |
| telomeric D-loop binding | (GO:0061821) | molecular_function | Interacting selectively and non-covalently with a telomeric D-loop. A telomeric D-loop is a three-stranded DNA displacement loop that forms at the site where the telomeric 3' single-stranded DNA overhang (formed of the repeat sequence TTAGGG in mammals) is tucked back inside the double-stranded component of telomeric DNA molecule, thus forming a t-loop or telomeric-loop and protecting the chromosome terminus. |
| podosome core | (GO:0061825) | cellular_component | The F-actin-rich core of an adhesion structure characterized by formation upon cell substrate contact and localization at the substrate-attached part of the cell. |
| apical tubulobulbar complex | (GO:0061828) | cellular_component | Actin-based structures involved in establishing close contact between mature spermatids and Sertoli cells at the luminal end of the Sertoli cell. |
| basal tubulobulbar complex | (GO:0061829) | cellular_component | Actin-based structures involved in establishing the blood-testis barrier of the Sertoli cell. |
| telomeric G-quadruplex DNA binding | (GO:0061849) | molecular_function | Interacting selectively and non-covalently with telomeric G-quadruplex DNA structures, in which groups of four guanines adopt a flat, cyclic Hoogsteen hydrogen-bonding arrangement known as a guanine tetrad. The stacking of guanine tetrads results in G-quadruplex DNA structures in telomeres. |
| hepatic stellate cell contraction | (GO:0061872) | biological_process | The actin filament-based process in which cytoplasmic actin filaments slide past one another resulting in contraction of a hepatic stellate cell. |
| calcium ion sensor activity | (GO:0061891) | molecular_function | Interacting selectively and non-covalently with and responding, e.g. by conformational change, to changes in the cellular level of calcium ions (Ca2+). |
| regulatory RNA binding | (GO:0061980) | molecular_function | Interacting selectively and non-covalently with a small regulatory RNA, a short RNA (usually 50-200 nt long) that is either independently transcribed or processed from a longer RNA by an RNAse enzyme. |
| D-loop DNA binding | (GO:0062037) | molecular_function | Interacting selectively and non-covalently with a DNA D-loop. A D-loop is a three-stranded DNA structure formed by the invasion of a single DNA strand that base pairs with one strand of duplex DNA, while the rest of the double-stranded DNA does not unwind. |
| transcription factor TFIIH holo complex binding | (GO:0062058) | molecular_function | Interacting selectively and non-covalently with a transcription factor TFIIH holo complex. |
| FACT complex binding | (GO:0062059) | molecular_function | Interacting selectively and non-covalently with a FACT complex. |
| NuA4 histone acetyltransferase complex binding | (GO:0062060) | molecular_function | Interacting selectively and non-covalently with a NuA4 histone acetyltransferase complex. |
| TAP complex binding | (GO:0062061) | molecular_function | Interacting selectively and non-covalently with a TAP complex. |
| oligosaccharyltransferase complex binding | (GO:0062062) | molecular_function | Interacting selectively and non-covalently with an oligosaccharyltransferase complex. |
| BBSome binding | (GO:0062063) | molecular_function | Interacting selectively and non-covalently with a BBSome complex. |
| box C/D snoRNP complex binding | (GO:0062064) | molecular_function | Interacting selectively and non-covalently with a box C/D snoRNP complex. |
| box H/ACA snoRNP complex binding | (GO:0062065) | molecular_function | Interacting selectively and non-covalently with a box H/ACA snoRNP complex. |
| PSII associated light-harvesting complex II binding | (GO:0062066) | molecular_function | Interacting selectively and non-covalently with a PSII associated light-harvesting complex II. |
| chloroplast photosystem I binding | (GO:0062067) | molecular_function | Interacting selectively and non-covalently with a chloroplast photosystem I. |
| chloroplast photosystem II binding | (GO:0062068) | molecular_function | Interacting selectively and non-covalently with a chloroplast photosystem II. |
| GARP complex binding | (GO:0062069) | molecular_function | Interacting selectively and non-covalently with a GARP complex. |
| SAGA complex binding | (GO:0062070) | molecular_function | Interacting selectively and non-covalently with a SAGA complex. |
| H3K9me3 modified histone binding | (GO:0062072) | molecular_function | Interacting selectively and non-covalently with a histone H3 in which the lysine residue at position 9 has been modified by trimethylation. |
| histone mRNA stem-loop binding complex | (GO:0062073) | cellular_component | A protein-containing complex composed of a stem-loop binding protein (in most species SLBP) and its interacting partner (SLIP1 or MIF4GD in most species) that binds to the histone mRNA (hmRNA) 3-prime-stem-loop structure. Facilitates hmRNA translation initiation and may also be involved in its processing and nuclear export. |
| armadillo repeat domain binding | (GO:0070016) | molecular_function | Interacting selectively and non-covalently with the armadillo repeat domain of a protein, an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity protein armadillo. Arm-repeat proteins are involved in various processes, including intracellular signalling and cytoskeletal regulation. |
| carbon monoxide binding | (GO:0070025) | molecular_function | Interacting selectively and non-covalently with carbon monoxide (CO). |
| nitric oxide binding | (GO:0070026) | molecular_function | Interacting selectively and non-covalently with nitric oxide (NO). |
| carbon monoxide sensor activity | (GO:0070027) | molecular_function | Interacting selectively and non-covalently with and responding, e.g. by conformational change, to changes in the cellular level of carbon monoxide (CO). |
| telomerase RNA binding | (GO:0070034) | molecular_function | Interacting selectively and non-covalently with the telomerase RNA template. |
| fibrinogen binding | (GO:0070051) | molecular_function | Interacting selectively and non-covalently with fibrinogen, a highly soluble hexameric glycoprotein complex that is found in blood plasma and is converted to fibrin by thrombin in the coagulation cascade. |
| collagen V binding | (GO:0070052) | molecular_function | Interacting selectively and non-covalently with a type V collagen trimer. |
| fructose binding | (GO:0070061) | molecular_function | Interacting selectively and non-covalently with the D- or L-enantiomer of fructose, the ketohexose arabino-hex-2-ulose. |
| RNA polymerase binding | (GO:0070063) | molecular_function | Interacting selectively and non-covalently with an RNA polymerase molecule or complex. |
| proline-rich region binding | (GO:0070064) | molecular_function | Interacting selectively and non-covalently with a proline-rich region, i.e. a region that contains a high proportion of proline residues, in a protein. |
| titin Z domain binding | (GO:0070080) | molecular_function | Interacting selectively and non-covalently with the titin Z domain, which recognizes and binds to the C-terminal calmodulin-like domain of alpha-actinin-2 (Act-EF34), adopts a helical structure, and binds in a groove formed by the two planes between the helix pairs of Act-EF34. |
| chromo shadow domain binding | (GO:0070087) | molecular_function | Interacting selectively and non-covalently with a chromo shadow domain, a protein domain that is distantly related, and found in association with, the chromo domain. |
| fructose-6-phosphate binding | (GO:0070095) | molecular_function | Interacting selectively and non-covalently with fructose 6-phosphate. |
| delta-catenin binding | (GO:0070097) | molecular_function | Interacting selectively and non-covalently with the delta subunit of the catenin complex. |
| ciliary neurotrophic factor binding | (GO:0070119) | molecular_function | Interacting selectively and non-covalently with the cytokine ciliary neurotrophic factor. |
| large ribosomal subunit rRNA binding | (GO:0070180) | molecular_function | Interacting selectively and non-covalently with the large ribosomal subunit RNA (LSU rRNA), a constituent of the large ribosomal subunit. In S. cerevisiae, this is the 25S rRNA. |
| small ribosomal subunit rRNA binding | (GO:0070181) | molecular_function | Interacting selectively and non-covalently with the small ribosomal subunit RNA (SSU rRNA), a constituent of the small ribosomal subunit. In S. cerevisiae, this is the 18S rRNA. |
| DNA polymerase binding | (GO:0070182) | molecular_function | Interacting selectively and non-covalently with a DNA polymerase. |
| obsolete MDM2 binding | (GO:0070215) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with any isoform of the MDM2 protein, a negative regulator of p53. This term was made obsolete because it represents binding to an individual protein. |
| MDM2/MDM4 family protein binding | (GO:0097371) | molecular_function | Interacting selectively and non-covalently with any isoform of the MDM2/MDM4 protein family, comprising negative regulators of p53. |
| obsolete MDM4 binding | (GO:0070216) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with any isoform of the MDM4 protein, a negative regulator of p53. This term was made obsolete because it represents binding to an individual protein. |
| necroptotic process | (GO:0070266) | biological_process | A programmed necrotic cell death process which begins when a cell receives a signal (e.g. a ligand binding to a death receptor or to a Toll-like receptor), and proceeds through a series of biochemical events (signaling pathways), characterized by activation of receptor-interacting serine/threonine-protein kinase 1 and/or 3 (RIPK1/3, also called RIP1/3) and by critical dependence on mixed lineage kinase domain-like (MLKL), and which typically lead to common morphological features of necrotic cell death. The process ends when the cell has died. The process is divided into a signaling phase, and an execution phase, which is triggered by the former. |
| phosphatidylinositol-4-phosphate binding | (GO:0070273) | molecular_function | Interacting selectively and non-covalently with phosphatidylinositol-4-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 4' position. |
| vitamin B6 binding | (GO:0070279) | molecular_function | Interacting selectively and non-covalently with any of the vitamin B6 compounds: pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate. |
| pyridoxal binding | (GO:0070280) | molecular_function | Interacting selectively and non-covalently with pyridoxal, 3-hydroxy-5-(hydroxymethyl)-2-methylpyridine-4-carbaldehyde, a form of vitamin B6. |
| pyridoxamine binding | (GO:0070281) | molecular_function | Interacting selectively and non-covalently with pyridoxamine, 4-(aminomethyl)-5-(hydroxymethyl)-2-methylpyridin-3-ol, a form of vitamin B6. |
| pyridoxine binding | (GO:0070282) | molecular_function | Interacting selectively and non-covalently with pyridoxine, 4,5-bis(hydroxymethyl)-2-methylpyridin-3-ol, a form of vitamin B6. |
| phosphatidic acid binding | (GO:0070300) | molecular_function | Interacting selectively and non-covalently with phosphatidic acid, any of a class of glycerol phosphate in which both the remaining hydroxyl groups of the glycerol moiety are esterified with fatty acids. |
| ATR-ATRIP complex | (GO:0070310) | cellular_component | A protein complex that contains the protein kinase ATR and ATR-interacting protein (ATRIP) and binds single-stranded DNA; ssDNA binding affinity is increased in the presence of replication protein A. |
| thyroid hormone binding | (GO:0070324) | molecular_function | Interacting selectively and non-covalently with thyroxine (T4) or triiodothyronine (T3), tyrosine-based hormones produced by the thyroid gland. |
| lipoprotein particle receptor binding | (GO:0070325) | molecular_function | Interacting selectively and non-covalently with a lipoprotein particle receptor. |
| aspartate binding | (GO:0070335) | molecular_function | Interacting selectively and non-covalently with aspartate, the alpha-amino-acid anion of 2-aminobutanedioic acid that has formula C4H5NO4. |
| flap-structured DNA binding | (GO:0070336) | molecular_function | Interacting selectively and non-covalently with a flap structure in DNA. A DNA flap structure is one in which a single-stranded length of DNA or RNA protrudes from a double-stranded DNA molecule. |
| 3'-flap-structured DNA binding | (GO:0070337) | molecular_function | Interacting selectively and non-covalently with a 3'-flap structure in DNA. A DNA flap structure is one in which a single-stranded 3'-end of DNA or RNA protrudes from a double-stranded DNA molecule. |
| 5'-flap-structured DNA binding | (GO:0070338) | molecular_function | Interacting selectively and non-covalently with a 5'-flap structure in DNA. A DNA flap structure is one in which a single-stranded 5'-end of DNA or RNA protrudes from a double-stranded DNA molecule. 5'-flap structures can be formed during DNA repair or lagging strand synthesis; in the latter case RNA flaps form from lagging strand RNA primers. |
| high mobility group box 1 binding | (GO:0070379) | molecular_function | Interacting selectively and non-covalently with high mobility group box 1 (HMBGB1). |
| NADP+ binding | (GO:0070401) | molecular_function | Interacting selectively and non-covalently with the oxidized form, NADP+, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions. |
| NADPH binding | (GO:0070402) | molecular_function | Interacting selectively and non-covalently with the reduced form, NADPH, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions. |
| NAD+ binding | (GO:0070403) | molecular_function | Interacting selectively and non-covalently with the oxidized form, NAD, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions. |
| NADH binding | (GO:0070404) | molecular_function | Interacting selectively and non-covalently with the reduced form, NADH, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions. |
| ammonium ion binding | (GO:0070405) | molecular_function | Interacting selectively and non-covalently with ammonium ions (NH4+). |
| glutamine binding | (GO:0070406) | molecular_function | Interacting selectively and non-covalently with glutamine, 2,5-diamino-5-oxopentanoic acid. |
| co-SMAD binding | (GO:0070410) | molecular_function | Interacting selectively and non-covalently with a common mediator SMAD signaling protein. |
| I-SMAD binding | (GO:0070411) | molecular_function | Interacting selectively and non-covalently with an inhibitory SMAD signaling protein. |
| R-SMAD binding | (GO:0070412) | molecular_function | Interacting selectively and non-covalently with a receptor-regulated SMAD signaling protein. |
| cell hair | (GO:0070451) | cellular_component | A long, thin cell projection that contains F-actin and tubulin, with microtubules centrally located and F-actin peripherally located. |
| uterine smooth muscle contraction | (GO:0070471) | biological_process | A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the uterus. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The uterus is a muscular organ of the female mammal for containing and usually for nourishing the young during development prior to birth. |
| repressing transcription factor binding | (GO:0070491) | molecular_function | Interacting selectively and non-covalently with a transcription repressor, any protein whose activity is required to prevent or downregulate transcription. |
| oligosaccharide binding | (GO:0070492) | molecular_function | Interacting selectively and non-covalently with any oligosaccharide, a molecule with between two and (about) 20 monosaccharide residues connected by glycosidic linkages. |
| death domain binding | (GO:0070513) | molecular_function | Interacting selectively and non-covalently with a death domain of a protein. The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD bind each other forming oligomers. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB. |
| K63-linked polyubiquitin modification-dependent protein binding | (GO:0070530) | molecular_function | Interacting selectively and non-covalently with a protein upon poly-ubiquitination formed by linkages between lysine residues at position 63 in the target protein. |
| oleic acid binding | (GO:0070538) | molecular_function | Interacting selectively and non-covalently with oleic acid, the 18-carbon monounsaturated fatty acid (9Z)-octadec-9-enoic acid. |
| linoleic acid binding | (GO:0070539) | molecular_function | Interacting selectively and non-covalently with linoleic acid, the 18-carbon unsaturated fatty acid (9Z,12Z)-octadeca-9,12-dienoic acid. |
| stearic acid binding | (GO:0070540) | molecular_function | Interacting selectively and non-covalently with stearic acid, the 18-carbon saturated fatty acid octadecanoic acid. |
| lysine-acetylated histone binding | (GO:0070577) | molecular_function | Interacting selectively and non-covalently with a histone in which a lysine residue has been modified by acetylation. |
| juvenile hormone response element binding | (GO:0070594) | molecular_function | Interacting selectively and non-covalently with the juvenile hormone response element (JHRE), a conserved sequence found in the promoters of genes whose expression is regulated in response to juvenile hormone. |
| proteasome binding | (GO:0070628) | molecular_function | Interacting selectively and non-covalently with a proteasome, a large multisubunit protein complex that catalyzes protein degradation. |
| vitamin D response element binding | (GO:0070644) | molecular_function | Interacting selectively and non-covalently with the vitamin D response element (VDRE), a short sequence with dyad symmetry found in the promoters of some of the cellular immediate-early genes, regulated by serum. |
| nonfunctional rRNA decay | (GO:0070651) | biological_process | An rRNA catabolic process that results in the targeted detection and degradation of aberrant rRNAs contained within translationally defective ribosomes, thereby acting as a quality-control system. |
| high-density lipoprotein particle receptor binding | (GO:0070653) | molecular_function | Interacting selectively and non-covalently with a high-density lipoprotein receptor. |
| preprotein binding | (GO:0070678) | molecular_function | Interacting selectively and non-covalently with a preprotein, the unprocessed form of a protein destined to undergo co- or post-translational processing. |
| inositol 1,4,5 trisphosphate binding | (GO:0070679) | molecular_function | Interacting selectively and non-covalently with inositol 1,4,5 trisphosphate. |
| macropinocytic cup | (GO:0070685) | cellular_component | A cell projection that forms at the site of macropinocytosis, a form of endocytosis that results in the uptake of relatively large amounts of extracellular fluid. The macropinocytic cup membrane selectively excludes certain proteins, such as H36 or PM4C4 in Dictyostelium, and the underlying cytoskeleton is enriched in F-actin and coronin. |
| macropinocytic cup cytoskeleton | (GO:0070687) | cellular_component | The part of the cortical actin cytoskeleton that forms part of a macropinocytic cup. |
| obsolete MLL5-L complex | (GO:0070688) | cellular_component | A protein complex that can methylate lysine-4 of histone H3 and plays an essential role in retinoic-acid-induced granulopoiesis. MLL5 is the catalytic methyltransferase subunit, and the complex also contains serine/threonine kinase 38 (STK38), protein phosphatase 1 catalytic subunits, the host cell factor-1 N-terminal subunit, beta-actin, and O-GlcNAc transferase; the human genes encoding the subunits are MLL5, STK38, PPP1CA, PPP1CB, PPP1CC, HCFC1, ACTB and OGT, respectively. This term was made obsolete becasue there is no evidence for the existance of this complex. |
| transmembrane receptor protein serine/threonine kinase binding | (GO:0070696) | molecular_function | Interacting selectively and non-covalently with a receptor that spans a cell membrane and possesses protein serine/threonine kinase activity. |
| activin receptor binding | (GO:0070697) | molecular_function | Interacting selectively and non-covalently with an activin receptor. |
| type I activin receptor binding | (GO:0070698) | molecular_function | Interacting selectively and non-covalently with a type I activin receptor. |
| type II activin receptor binding | (GO:0070699) | molecular_function | Interacting selectively and non-covalently with a type II activin receptor. |
| BMP receptor binding | (GO:0070700) | molecular_function | Interacting selectively and non-covalently with a BMP receptor. |
| poly-purine tract binding | (GO:0070717) | molecular_function | Interacting selectively and non-covalently with any stretch of purines (adenine or guanine) in an RNA molecule. |
| leucine binding | (GO:0070728) | molecular_function | Interacting selectively and non-covalently with 2-amino-4-methylpentanoic acid. |
| C2H2 zinc finger domain binding | (GO:0070742) | molecular_function | Interacting selectively and non-covalently with a C2H2-type zinc finger domain of a protein. The C2H2 zinc finger is the classical zinc finger domain, in which two conserved cysteines and histidines co-ordinate a zinc ion. |
| interleukin-35 binding | (GO:0070746) | molecular_function | Interacting selectively and non-covalently with interleukin-35. |
| interleukin-35 receptor binding | (GO:0070748) | molecular_function | Interacting selectively and non-covalently with the interleukin-35 receptor. |
| dynein complex binding | (GO:0070840) | molecular_function | Interacting selectively and non-covalently with a dynein complex, a protein complex that contains two or three dynein heavy chains and several light chains, and has microtubule motor activity. |
| growth factor receptor binding | (GO:0070851) | molecular_function | Interacting selectively and non-covalently with a growth factor receptor. |
| myosin VI binding | (GO:0070853) | molecular_function | Interacting selectively and non-covalently with a class VI myosin. The myosin VI heavy chain has a single IQ motif in the neck and a tail region with a coiled coil domain followed by a unique globular domain, a unique insertion that enables myosin VI to move towards the pointed or minus end of actin filaments. |
| myosin VI heavy chain binding | (GO:0070854) | molecular_function | Interacting selectively and non-covalently with a heavy chain of a myosin VI complex. |
| myosin VI head/neck binding | (GO:0070855) | molecular_function | Interacting selectively and non-covalently with the head/neck region of a myosin VI heavy chain. |
| myosin VI light chain binding | (GO:0070856) | molecular_function | Interacting selectively and non-covalently with a light chain of a myosin VI complex. |
| sterol-dependent protein binding | (GO:0070866) | molecular_function | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) in the presence of sterols. |
| primary miRNA binding | (GO:0070878) | molecular_function | Interacting selectively and non-covalently with a primary microRNA (pri-miRNA) transcript, an RNA molecule that is processed into a short hairpin-shaped structure called a pre-miRNA and finally into a functional miRNA. Both double-stranded and single-stranded regions of a pri-miRNA are required for binding. |
| pre-miRNA binding | (GO:0070883) | molecular_function | Interacting selectively and non-covalently with a precursor microRNA (pre-miRNA) transcript, a stem-loop-containing precursor of microRNA. |
| E-box binding | (GO:0070888) | molecular_function | Interacting selectively and non-covalently with an E-box, a DNA motif with the consensus sequence CANNTG that is found in the promoters of a wide array of genes expressed in neurons, muscle and other tissues. |
| lipoteichoic acid binding | (GO:0070891) | molecular_function | Interacting selectively and non-covalently with lipoteichoic acid. |
| serine binding | (GO:0070905) | molecular_function | Interacting selectively and non-covalently with 2-amino-3-hydroxypropanoic acid. |
| coenzyme F420 binding | (GO:0070967) | molecular_function | Interacting selectively and non-covalently with F420, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. |
| pyrroloquinoline quinone binding | (GO:0070968) | molecular_function | Interacting selectively and non-covalently with pyrroloquinoline quinone, PQQ, the coenzyme or the prosthetic group of certain alcohol dehydrogenases and glucose dehydrogenases. |
| POU domain binding | (GO:0070974) | molecular_function | Interacting selectively and non-covalently with a POU domain of a protein. The POU domain is a bipartite DNA binding domain composed of two subunits separated by a non-conserved region of 15-55 amino acids; it is found in several eukaryotic transcription factors. |
| FHA domain binding | (GO:0070975) | molecular_function | Interacting selectively and non-covalently with a FHA domain of a protein. The FHA domain is a phosphopeptide recognition domain found in many regulatory proteins, and consists of approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich. |
| TIR domain binding | (GO:0070976) | molecular_function | Interacting selectively and non-covalently with a Toll-Interleukin receptor (TIR) domain of a protein. The TIR domain is an intracellular 200 residue domain that is found in the Toll protein, the interleukin-1 receptor (IL-1R), and MyD88; it contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. |
| SET domain binding | (GO:0070984) | molecular_function | Interacting selectively and non-covalently with a SET domain of a protein. SET domains are named after three Drosophila proteins that contain this domain: Su(var), E(z) and trithorax. SET domains are associated with histone lysine methylation. |
| snRNP binding | (GO:0070990) | molecular_function | Interacting selectively and non-covalently with any part of a small nuclear ribonucleoprotein particle. |
| type 1 melanocortin receptor binding | (GO:0070996) | molecular_function | Interacting selectively and non-covalently with a type 1 melanocortin receptor. |
| eukaryotic initiation factor eIF2 binding | (GO:0071074) | molecular_function | Interacting selectively and non-covalently with eukaryotic initiation factor eIF2, a protein complex involved in the initiation of ribosome-mediated translation. |
| Kv4.2-KChIP1 channel complex | (GO:0071192) | cellular_component | A voltage-gated potassium channel complex that contains the Kv channel interacting protein KChIP1 associated with the channel via interaction with the Kv alpha subunit 4.2. |
| Kv4.2-KChIP2 channel complex | (GO:0071193) | cellular_component | A voltage-gated potassium channel complex that contains the Kv channel interacting protein KChIP2 associated with the channel via interaction with the Kv alpha subunit 4.2. |
| Kv4.2-KChIP3 channel complex | (GO:0071194) | cellular_component | A voltage-gated potassium channel complex that contains the Kv channel interacting protein KChIP3 associated with the channel via interaction with the Kv alpha subunit 4.2. |
| Kv4.2-KChIP4 channel complex | (GO:0071195) | cellular_component | A voltage-gated potassium channel complex that contains the Kv channel interacting protein KChIP4 associated with the channel via interaction with the Kv alpha subunit 4.2. |
| Kv4.3-KChIP1 channel complex | (GO:0071196) | cellular_component | A voltage-gated potassium channel complex that contains the Kv channel interacting protein KChIP1 associated with the channel via interaction with the Kv alpha subunit 4.3. |
| WASH complex | (GO:0071203) | cellular_component | A protein complex that localizes at the surface of endosomes, where it recruits and activates the Arp2/3 complex to induce actin polymerization. In human, the WASH complex is composed of F-actin-capping protein subunits alpha and beta, WASH1, FAM21, KIAA1033, KIAA0196 and CCDC53. |
| histone pre-mRNA stem-loop binding | (GO:0071207) | molecular_function | Interacting selectively and non-covalently with a conserved stem-loop structure found in histone pre-mRNAs. |
| histone pre-mRNA DCP binding | (GO:0071208) | molecular_function | Interacting selectively and non-covalently with the downstream cleavage product (DCP) generated by histone pre-mRNA 3'-end processing. |
| U7 snRNA binding | (GO:0071209) | molecular_function | Interacting selectively and non-covalently with the U7 small nuclear RNA (U7 snRNA). |
| cellular response to acid chemical | (GO:0071229) | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by the chemical structure of the anion portion of the dissociated acid (rather than the acid acting as a proton donor). The acid chemical may be in gaseous, liquid or solid form. |
| connexin binding | (GO:0071253) | molecular_function | Interacting selectively and non-covalently with a connexin, any of a group of related proteins that assemble to form gap junctions. |
| cellular response to histamine | (GO:0071420) | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a histamine stimulus. Histamine, the biogenic amine 2-(1H-imidazol-4-yl)ethanamine, is involved in local immune responses as well as regulating physiological function in the gut and acting as a neurotransmitter. |
| invadopodium | (GO:0071437) | cellular_component | A cell projection that emerges from the ECM-facing surface of a cell, is enriched in actin and associated cytoskeletal proteins, and displays localized proteolytic activity toward the substrate. |
| tDNA binding | (GO:0071443) | molecular_function | Interacting selectively and non-covalently with DNA sequences encoding transfer RNA. |
| cellular response to hydrostatic pressure | (GO:0071464) | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrostatic pressure stimulus. Hydrostatic pressure is the force acting on an object in a system where the fluid is at rest (as opposed to moving). The weight of the fluid above the object creates pressure on it. |
| cellular response to fluid shear stress | (GO:0071498) | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fluid shear stress stimulus. Fluid shear stress is the force acting on an object in a system where the fluid is moving across a solid surface. |
| cellular response to laminar fluid shear stress | (GO:0071499) | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a laminar fluid shear stress stimulus. Laminar fluid flow is the force acting on an object in a system where the fluid is moving across a solid surface in parallel layers. |
| ankyrin repeat binding | (GO:0071532) | molecular_function | Interacting selectively and non-covalently with an ankyrin repeat of a protein. Ankyrin repeats are tandemly repeated modules of about 33 amino acids; each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90-degree angle, and repeats stack to form an L-shaped structure. |
| RING-like zinc finger domain binding | (GO:0071535) | molecular_function | Interacting selectively and non-covalently with a RING-like zinc finger domain domain of a protein. The RING-like domain is a zinc finger domain that is related to the C3HC4 RING finger domain. |
| RIP homotypic interaction motif binding | (GO:0071551) | molecular_function | Interacting selectively and non-covalently with a RIP homotypic interaction motif (RHIM) of a protein. The RHIM is a 16-amino-acid motif found in some members, including RIP3, of a family of related kinases. |
| npBAF complex | (GO:0071564) | cellular_component | A SWI/SNF-type complex that is found in neural stem or progenitor cells, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, PHF10/BAF45A, ACTL6A/BAF53A genes. The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. |
| nBAF complex | (GO:0071565) | cellular_component | A SWI/SNF-type complex that is found in post-mitotic neurons, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, DPF1/BAF45B, DPF3/BAF45C, ACTL6B/BAF53B genes. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. |
| tetrahydrodictyopterin binding | (GO:0071576) | molecular_function | Interacting selectively and non-covalently with tetrahydrodictyopterin, the pterin 2-amino-6-[(1R,2R)-1,2-dihydroxypropyl]-5,6,7,8-tetrahydropteridin-4(3H)-one. |
| DNA/RNA hybrid binding | (GO:0071667) | molecular_function | Interacting selectively and non-covalently with a RNA/DNA hybrid. |
| muscle thin filament assembly | (GO:0071689) | biological_process | The aggregation, arrangement and bonding together of proteins to form the actin-based thin filaments of myofibrils in striated muscle. |
| cardiac muscle thin filament assembly | (GO:0071691) | biological_process | The aggregation, arrangement and bonding together of proteins to form the actin-based thin filaments of myofibrils in cardiac muscle. |
| polymeric IgA immunoglobulin complex | (GO:0071749) | cellular_component | A protein complex composed of two, three, or four monomeric IgA immunoglobulin complexes linked through both direct disulfide bonds and through disulfide binded monomers of J chain acting as a bridge. Each IgA monomer consists of two identical immunoglobulin heavy chains of an IgA isotype and two identical immunoglobulin light chains, held together by disulfide bonds. Dimeric IgA is sometimes complexed additionally with secretory component, and present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph. |
| dimeric IgA immunoglobulin complex | (GO:0071750) | cellular_component | A protein complex composed of two monomeric IgA immunoglobulin complexes linked through both direct disulfide bonds and through a disulfide binded monomer of J chain acting as a bridge. Each IgA monomer consists of two identical immunoglobulin heavy chains of an IgA isotype and two identical immunoglobulin light chains, held together by disulfide bonds. Dimeric IgA is sometimes complexed additionally with secretory component, and present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph. |
| IgM immunoglobulin complex, circulating | (GO:0071754) | cellular_component | A polymer of five or six IgM core units each composed of two identical immunoglobulin heavy chains of the IgM isotype and two identical immunoglobulin light chains, held together by disulfide bonds; the individual IgM core units are held together via disulfide bonds with a single J chain polypeptide acting as a bridge between two of the polymeric units. Circulating IgM is present in the extracellular space, in mucosal areas or other tissues, or in the blood or lymph. |
| mycolate cell wall layer assembly | (GO:0071769) | biological_process | The aggregation, arrangement and bonding together of a set of components, including arabinogalactan mycolate and trehalose dimycolate, to form the mycolate layer of the Actinobacterium-type cell wall. The mycolate layer is physically attached to the peptidoglycan layer. |
| DIM/DIP cell wall layer assembly | (GO:0071770) | biological_process | The aggregation, arrangement and bonding together of a set of components, including (phenyl)phthiocerol, phthiodiolone, phthiotriol dimycocerosate and diphthioceranate, to form the DIM/DIP layer of the Actinobacterium-type cell wall. |
| chemokine (C-C motif) ligand 5 binding | (GO:0071791) | molecular_function | Interacting selectively and non-covalently with chemokine (C-C motif) ligand 5. |
| bacillithiol metabolic process | (GO:0071792) | biological_process | The chemical reactions and pathways involving bacillithiol, the alpha-anomeric glycoside of L-cysteinyl-D-glucosamine with L-malic acid. Bacillithiol, produced widely in the Firmicutes and sporadically in other bacterial lineages, is a low-molecular-weight thiol analogous to mycothiol in the Actinomycetes and glutathione in many species. |
| bacillithiol biosynthetic process | (GO:0071793) | biological_process | The chemical reactions and pathways resulting in the formation of bacillithiol, the alpha-anomeric glycoside of L-cysteinyl-D-glucosamine with L-malic acid. Bacillithiol, produced widely in the Firmicutes and sporadically in other bacterial lineages, is a low-molecular-weight thiol analogous to mycothiol in the Actinomycetes and glutathione in many species. |
| CAP-Gly domain binding | (GO:0071794) | molecular_function | Interacting selectively and non-covalently with a CAP-Gly domain of a protein. The CAP_Gly domain is a conserved, glycine-rich domain of about 42 residues found in some cytoskeleton-associated proteins, and features a novel protein fold containing three beta-sheets. |
| K11-linked polyubiquitin modification-dependent protein binding | (GO:0071795) | molecular_function | Interacting selectively and non-covalently with a protein upon poly-ubiquitination formed by linkages between lysine residues at position 11 in the target protein. |
| K6-linked polyubiquitin modification-dependent protein binding | (GO:0071796) | molecular_function | Interacting selectively and non-covalently with a protein upon poly-ubiquitination formed by linkages between lysine residues at position 6 in the target protein. |
| podosome assembly | (GO:0071800) | biological_process | The aggregation, arrangement and bonding together of a set of components to form a podosome, an actin-rich adhesion structure characterized by formation upon cell substrate contact and localization at the substrate-attached part of the cell. |
| protein-lipid complex binding | (GO:0071814) | molecular_function | Interacting selectively and non-covalently with a protein-lipid complex, any macromolecular complex that contains both protein and lipid molecules. |
| intermediate-density lipoprotein particle binding | (GO:0071815) | molecular_function | Interacting selectively and non-covalently with a intermediate-density lipoprotein particle, a triglyceride-rich lipoprotein particle that typically contains APOB100, APOE and APOCs and has a density of 1.006-1.019 g/ml and a diameter of between 25-30 nm. |
| N-box binding | (GO:0071820) | molecular_function | Interacting selectively and non-covalently with an N-box, a DNA motif with the consensus sequence CACNAG that is found in the promoters of genes expressed preferentially at synapses. |
| HMG box domain binding | (GO:0071837) | molecular_function | Interacting selectively and non-covalently with an HMG box domain, a protein domain that consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. |
| neuropeptide receptor binding | (GO:0071855) | molecular_function | Interacting selectively and non-covalently with a neuropeptide receptor. |
| beta-endorphin receptor binding | (GO:0071857) | molecular_function | Interacting selectively and non-covalently with a beta-endorphin receptor. |
| corazonin receptor binding | (GO:0071858) | molecular_function | Interacting selectively and non-covalently with a corazonin receptor. |
| neuropeptide F receptor binding | (GO:0071859) | molecular_function | Interacting selectively and non-covalently with a neuropeptide F receptor. |
| proctolin receptor binding | (GO:0071860) | molecular_function | Interacting selectively and non-covalently with a proctolin receptor. |
| tachykinin receptor binding | (GO:0071861) | molecular_function | Interacting selectively and non-covalently with a tachykinin receptor. |
| 1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding | (GO:0071886) | molecular_function | Interacting selectively and non-covalently with the amine 1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine, a serotonin receptor agonist that can act as a psychedelic drug. |
| 14-3-3 protein binding | (GO:0071889) | molecular_function | Interacting selectively and non-covalently with a 14-3-3 protein. A 14-3-3 protein is any of a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimers within all eukaryotic cells, and have been implicated in the modulation of distinct biological processes by binding to specific phosphorylated sites on diverse target proteins, thereby forcing conformational changes or influencing interactions between their targets and other molecules. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. |
| bicarbonate binding | (GO:0071890) | molecular_function | Interacting selectively and non-covalently with bicarbonate (CHO3-) ions. |
| regulation of estrogen receptor binding | (GO:0071898) | biological_process | Any process that modulates the frequency, rate or extent of estrogen receptor binding, interacting selectively with a an estrogen receptor. |
| negative regulation of estrogen receptor binding | (GO:0071899) | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of estrogen receptor binding, interacting selectively with an estrogen receptor. |
| CRD domain binding | (GO:0071906) | molecular_function | Interacting selectively and non-covalently with a CRD (context dependent regulatory) domain, a domain of about 130 residues that is the most divergent region among the LEF/TCF proteins. |
| Arp2/3 complex binding | (GO:0071933) | molecular_function | Interacting selectively and non-covalently with an Arp2/3 complex, a protein complex that contains two actin-related proteins, Arp2 and Arp3, and five novel proteins (ARPC1-5). |
| FAD binding | (GO:0071949) | molecular_function | Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. |
| FADH2 binding | (GO:0071950) | molecular_function | Interacting selectively and non-covalently with the reduced form, FADH2, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. |
| WD40-repeat domain binding | (GO:0071987) | molecular_function | Interacting selectively and non-covalently with a WD40 repeat domain of a protein. The WD40 repeat is a short structural motif of approximately 40 amino acids, often terminating in a tryptophan-aspartic acid (W-D) dipeptide. Several of these repeats are combined to form a type of protein domain called the WD domain. |
| alkene binding | (GO:0072328) | molecular_function | Interacting selectively and non-covalently with an alkene, any acyclic branched or unbranched hydrocarbon having one carbon-carbon double bond and the general formula CnH2n. |
| modified amino acid binding | (GO:0072341) | molecular_function | Interacting selectively and non-covalently with a modified amino acid. |
| L-DOPA binding | (GO:0072544) | molecular_function | Interacting selectively and non-covalently with L-DOPA, the modified amino acid (2S)-2-amino-3-(3,4-dihydroxyphenyl)propanoic acid. |
| tyrosine binding | (GO:0072545) | molecular_function | Interacting selectively and non-covalently with2-amino-3-(4-hydroxyphenyl)propanoic acid. |
| other organism presynaptic membrane | (GO:0072556) | cellular_component | A presynaptic membrane that is part of another organism, i.e. a secondary organism with which the first organism is interacting. A presynaptic membrane is specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane. |
| ADP-D-ribose binding | (GO:0072570) | molecular_function | Interacting selectively and non-covalently with ADP-D-ribose, an ADP-aldose having ribose as the aldose fragment. |
| mono-ADP-D-ribose binding | (GO:0072571) | molecular_function | Interacting selectively and non-covalently with monomeric ADP-D-ribose, an ADP-aldose having ribose as the aldose fragment. |
| poly-ADP-D-ribose binding | (GO:0072572) | molecular_function | Interacting selectively and non-covalently with polymeric ADP-D-ribose, a polymer that is composed of poly-ADP-D-ribose units linked through 1,2-glycosidic bonds at the ribose ring. |
| phosphatidylinositol-3,5-bisphosphate binding | (GO:0080025) | molecular_function | Interacting selectively and non-covalently with phosphatidylinositol-3,5-bisphosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3' and 5' positions. |
| 5S rDNA binding | (GO:0080084) | molecular_function | Interacting selectively and non-covalently with the 5S rDNA sequence encoding ribosomal 5S rRNA, which is individually transcribed by RNA polymerase III, rather than by RNA polymerase I, in species where it exists. |
| myosin XI tail binding | (GO:0080115) | molecular_function | Interacting selectively and non-covalently with the tail region of a myosin XI heavy chain. |
| cardiac muscle cell contraction | (GO:0086003) | biological_process | The actin filament-based process in which cytoplasmic actin filaments slide past one another resulting in contraction of a cardiac muscle cell. |
| protein binding involved in heterotypic cell-cell adhesion | (GO:0086080) | molecular_function | Interacting selectively and non-covalently with any protein or protein complex contributing to the adhesion of two different types of cells. |
| cell adhesive protein binding involved in atrial cardiac muscle cell-AV node cell communication | (GO:0086081) | molecular_function | Interacting selectively and non-covalently with any protein or protein complex that results in the connection of an atrial cardiomyocyte with an AV node cell and contributes to the communication between the two cells. |
| cell adhesive protein binding involved in AV node cell-bundle of His cell communication | (GO:0086082) | molecular_function | Interacting selectively and non-covalently with any protein or protein complex that results in the connection of an AV node cell with a bundle of His cell and contributes to the communication between the two cells. |
| cell adhesive protein binding involved in bundle of His cell-Purkinje myocyte communication | (GO:0086083) | molecular_function | Interacting selectively and non-covalently with any protein or protein complex that results in the connection of a bundle of His cell with a Purkinje myocyte and contributes to the communication between the two cells. |
| cell adhesive protein binding involved in Purkinje myocyte-ventricular cardiac muscle cell communication | (GO:0086084) | molecular_function | Interacting selectively and non-covalently with any protein or protein complex that results in the connection of a Purkinje myocyte with an ventricular cardiac muscle cell and contributes to the communication between the two cells. |
| cell adhesive protein binding involved in SA cardiac muscle cell-atrial cardiac muscle cell communication | (GO:0086085) | molecular_function | Interacting selectively and non-covalently with any protein or protein complex that results in the connection of an SA cardiomyocyte with an atrial cardiomyocyte and contributes to the communication between the two cells. |
| endocytic targeting sequence binding | (GO:0089710) | molecular_function | Interacting selectively and non-covalently with a endocytic signal sequence, a specific peptide sequence, of 4-6 amino acids with an essential tyrosine (Y), found on cytoplasmic tails of some cell surface membrane proteins, which directs internalization by clathrin-coated pits. |
| RHG protein domain binding | (GO:0089719) | molecular_function | Interacting selectively and non-covalently with an RHG (reaper/hid/grimm) domain/motif (AKA iap binding motif). |
| caspase binding | (GO:0089720) | molecular_function | Interacting selectively and non-covalently with a caspase family protein. |
| positive regulation of protein homodimerization activity | (GO:0090073) | biological_process | Any process that increases the frequency, rate or extent of protein homodimerization, interacting selectively with an identical protein to form a homodimer. |
| negative regulation of protein homodimerization activity | (GO:0090074) | biological_process | Any process that decreases the frequency, rate or extent of protein homodimerization, interacting selectively with an identical protein to form a homodimer. |
| brassinosteroid binding | (GO:0090411) | molecular_function | Interacting selectively and non-covalently with a brassinosteroid. |
| polo box domain specific binding | (GO:0090488) | molecular_function | Interacting selectively and non-covalently with a polo box domain of a protein. The polo box domain is involved in binding substrates of polo kinases. |
| MIT domain binding | (GO:0090541) | molecular_function | Interacting selectively and non-covalently with the MIT domain of a protein. The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking. |
| ELYC domain binding | (GO:0090542) | molecular_function | Interacting selectively and non-covalently with the ELYC domain of a protein. The ELYC domain is an approximately 150 amino acid sequence which contains a highly conserved tetrapeptide sequence, ELYC. |
| nematode male tail mating organ morphogenesis | (GO:0090597) | biological_process | The process in which the anatomical structures of the nematode male tail mating organ are generated and organized. The male tail is a sensory organ required for mating and, in C. elegans, consists of ray sensilla, an acellular cuticular fan, a sensory hook, and protracting, copulatory spicules. |
| double-stranded/single-stranded junction telomeric DNA binding | (GO:0090655) | molecular_function | Interacting selectively and non-covalently with the junction formed at the point where double-stranded telomeric DNA becomes a single-stranded G-rich telomeric DNA 3' overhang. |
| MATH domain binding | (GO:0090736) | molecular_function | Interacting selectively and non-covalently with a meprin and TRAF homology (MATH) domain. |
| ceramide binding | (GO:0097001) | molecular_function | Interacting selectively and non-covalently with any ceramide, a class of lipids that is composed of sphingosine linked to a fatty acid. Ceramides are a major component of cell membranes. |
| adipokinetic hormone binding | (GO:0097004) | molecular_function | Interacting selectively and non-covalently with an adipokinetic hormone. Adipokinetic hormones (AKHs) are peptide hormones that are involved in the mobilization of sugar and lipids from the insect fat body during energy-requiring activities such as flight and locomotion. They also contribute to hemolymph sugar homeostasis. |
| adipokinetic hormone receptor binding | (GO:0097005) | molecular_function | Interacting selectively and non-covalently with an adipokinetic hormone receptor. Adipokinetic hormones (AKHs) are peptide hormones that are involved in the mobilization of sugar and lipids from the insect fat body during energy-requiring activities such as flight and locomotion. They also contribute to hemolymph sugar homeostasis. |
| L27 domain binding | (GO:0097016) | molecular_function | Interacting selectively and non-covalently with a L27 domain of a protein. L27 is composed of conserved negatively charged amino acids and a conserved aromatic amino acid. L27 domains can assemble proteins involved in signaling and establishment and maintenance of cell polarity into complexes by interacting in a heterodimeric manner. |
| CENP-A containing nucleosome binding | (GO:0097030) | molecular_function | Interacting selectively and non-covalently with a centromere-specific nucleosome, a form of nucleosome located only at the centromere, in which the histone H3 is replaced by the variant form CENP-A (sometimes known as CenH3). |
| cadmium ion sensor activity | (GO:0097063) | molecular_function | Interacting selectively and non-covalently with and responding, e.g. by conformational change, to changes in the cellular level of cadmium (Cd++). |
| copper ion sensor activity | (GO:0097077) | molecular_function | Interacting selectively and non-covalently with and responding, e.g. by conformational change, to changes in the cellular level of copper(I) (Cu+). |
| supercoiled DNA binding | (GO:0097100) | molecular_function | Interacting selectively and non-covalently with supercoiled DNA. For example, during replication and transcription, template DNA is negatively supercoiled in the receding downstream DNA and positively supercoiled in the approaching downstream DNA. |
| hedgehog family protein binding | (GO:0097108) | molecular_function | Interacting selectively and non-covalently with a member of the hedgehog protein family, signaling proteins involved in development. |
| neuroligin family protein binding | (GO:0097109) | molecular_function | Interacting selectively and non-covalently with a member of the neuroligin protein family, neuronal cell surface proteins that mediate synapse formation. |
| scaffold protein binding | (GO:0097110) | molecular_function | Interacting selectively and non-covalently with a scaffold protein. Scaffold proteins are crucial regulators of many key signaling pathways. Although not strictly defined in function, they are known to interact and/or bind with multiple members of a signaling pathway, tethering them into complexes. |
| pre-mRNA intronic binding | (GO:0097157) | molecular_function | Interacting selectively and non-covalently with an intronic sequence of a pre-messenger RNA (pre-mRNA). |
| pre-mRNA intronic pyrimidine-rich binding | (GO:0097158) | molecular_function | Interacting selectively and non-covalently with a pyrimidine-rich (CU-rich) intronic sequence of a pre-messenger RNA (pre-mRNA). |
| organic cyclic compound binding | (GO:0097159) | molecular_function | Interacting selectively and non-covalently with an organic cyclic compound, any molecular entity that contains carbon arranged in a cyclic molecular structure. |
| polychlorinated biphenyl binding | (GO:0097160) | molecular_function | Interacting selectively and non-covalently with a polychlorinated biphenyl (PCB), a biphenyl compound containing between 2 and 10 chlorine atoms attached to the two benzene rings. |
| DH domain binding | (GO:0097161) | molecular_function | Interacting selectively and non-covalently with a DH (Dbl homology) domain of a protein. The DH domain contains three structurally conserved regions separated by more variable regions. It is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH (pleckstrin homology) junction site, constitute the Rho GTPase interacting pocket. |
| MADS box domain binding | (GO:0097162) | molecular_function | Interacting selectively and non-covalently with a MADS box domain, a protein domain that encodes the DNA-binding MADS domain. The MADS domain binds to DNA sequences of high similarity to the motif CC[A/T]6GG termed the CArG-box. MADS-domain proteins are generally transcription factors. The length of the MADS-box is in the range of 168 to 180 base pairs. |
| mitochondrial ribosome binding | (GO:0097177) | molecular_function | Interacting selectively and non-covalently with any part of a mitochondrial ribosome, a ribosome found in the mitochondrion of a eukaryotic cell. |
| phagocytic cup base | (GO:0097204) | cellular_component | The older part of the phagocytic cup where the actin cytoskeleton disassembles, allowing early incoming and outgoing vesicular trafficking. |
| guanosine tetraphosphate binding | (GO:0097216) | molecular_function | Interacting selectively and non-covalently with guanosine tetraphosphate (5'-ppGpp-3'), a guanosine bisphosphate having diphosphate groups at both the 3' and 5'-positions. |
| flavonoid binding | (GO:0097243) | molecular_function | Interacting selectively and non-covalently with a flavonoid, a compound containing two or more aromatic rings, each bearing at least one aromatic hydroxyl and connected with a carbon bridge. |
| flavonol binding | (GO:0097244) | molecular_function | Interacting selectively and non-covalently with a flavonol, a flavonoid that contains a 3-hydroxy-2-phenylchromen-4-one backbone. |
| flavanol binding | (GO:0097245) | molecular_function | Interacting selectively and non-covalently with a flavanol. |
| catechin binding | (GO:0097246) | molecular_function | Interacting selectively and non-covalently with a catechin, a polyphenolic antioxidant plant metabolite with a flavonoid or flavan-3-ol structure. |
| epigallocatechin 3-gallate binding | (GO:0097247) | molecular_function | Interacting selectively and non-covalently with epigallocatechin 3-gallate, a compound that is a gallic acid ester of a catechin. |
| 7SK snRNA binding | (GO:0097322) | molecular_function | Interacting selectively and non-covalently with a 7SK small nuclear RNA (7SK snRNA). |
| ripoptosome | (GO:0097342) | cellular_component | A protein complex whose core components are the receptor-interacting serine/threonine-protein kinases RIPK1 and RIPK3 (also called RIP1 and RIP3). Formation of the ripoptosome can induce an extrinsic apoptotic signaling pathway or a necroptotic signaling pathway. The composition of this protein complex may depend on several factors including nature of the signal, cell type and more. |
| toxin-antitoxin pair type II binding | (GO:0097351) | molecular_function | Interacting selectively and non-covalently with a toxic protein, disabling its function. There may be more than one antitoxin to a toxic protein. Instances of this activity are known only in prokaryotes, where the toxic protein may be a ribonuclease, a DNA gyrase, or other. |
| carbohydrate derivative binding | (GO:0097367) | molecular_function | Interacting selectively and non-covalently with a carbohydrate derivative. |
| hypoxanthine DNA N-glycosylase activity | (GO:0097507) | molecular_function | DNA N-glycosylase activity acting on deaminated adenine (hypoxanthine). |
| xanthine DNA N-glycosylase activity | (GO:0097508) | molecular_function | DNA N-glycosylase activity acting on deaminated guanine (xanthine). |
| oxanine DNA N-glycosylase activity | (GO:0097509) | molecular_function | DNA N-glycosylase activity acting on deaminated guanine where the resulting base (oxanine) is generated by NO- or HNO2-induced nitrosative deamination. |
| necroptotic signaling pathway | (GO:0097527) | biological_process | A series of molecular signals which triggers the necroptotic death of a cell. The pathway starts with reception of a signal, is characterized by activation of receptor-interacting serine/threonine-protein kinase 1 and/or 3 (RIPK1/3, also called RIP1/3), and ends when the execution phase of necroptosis is triggered. |
| stress response to acid chemical | (GO:0097532) | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis caused by the chemical structure of the anion portion of a dissociated acid (rather than the acid acting as a proton donor). The acid chemical may be in gaseous, liquid or solid form. |
| cellular stress response to acid chemical | (GO:0097533) | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in cellular homeostasis caused by the chemical structure of the anion portion of a dissociated acid (rather than the acid acting as a proton donor). The acid chemical may be in gaseous, liquid or solid form. |
| lamellipodium organization | (GO:0097581) | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lamellipodium. A lamellipodium is a thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments. |
| ventral disc | (GO:0097597) | cellular_component | Specialized organelle found in Giardia species (trophozoite stage) and characterized by a spiral array of microtubules and microtubule-associated structures including dorsal microribbons and crossbridges. The edge of the ventral disc narrows into a lateral crest. The ventral disk mediates mechanical attachment of the trophozoite to the host's intestinal wall, and contains the contractile proteins actinin, alpha-actinin, myosin, and tropomyosin working towards contraction of the disk involved in adherence. |
| cullin family protein binding | (GO:0097602) | molecular_function | Interacting selectively and non-covalently with any member of the cullin family, hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3). |
| calcitonin family binding | (GO:0097644) | molecular_function | Interacting selectively and non-covalently with any member of the calcitonin family (e.g. adrenomedullin, adrenomedullin 2 (intermedin), amylin, calcitonin and calcitonin gene-related peptides (CGRPs)). |
| amylin binding | (GO:0097645) | molecular_function | Interacting selectively and non-covalently with amylin. |
| serpin family protein binding | (GO:0097655) | molecular_function | Interacting selectively and non-covalently with any member of the serpin protein family (serine protease inhibitors or classified inhibitor family I4). Serpins are a broadly distributed family of protease inhibitors that use a conformational change to inhibit target enzymes. They are central in controlling many important proteolytic cascades. The majority of serpins inhibit serine proteases, but serpins that inhibit caspases and papain-like cysteine proteases have also been identified. Rarely, serpins perform a non-inhibitory function; for example, several human serpins function as hormone transporters and certain serpins function as molecular chaperones or tumor suppressors. |
| STAT family protein binding | (GO:0097677) | molecular_function | Interacting selectively and non-covalently with any member of the signal transducers and activators of transcription (STAT) protein family. STATs are, as the name indicates, both signal transducers and transcription factors. STATs are activated by cytokines and some growth factors and thus control important biological processes including cell growth, cell differentiation, apoptosis and immune responses. |
| SOCS family protein binding | (GO:0097678) | molecular_function | Interacting selectively and non-covalently with any member of the suppressor of cytokine signaling (SOCS) family of proteins. SOCS represent an important mechanism to extinguish cytokine and growth factor receptor signaling. Individual SOCS proteins are typically induced by specific cytokines and growth factors, thereby generating a negative feedback loop. SOCS proteins have important functions in development and homeostasis, and in disease, particularly tumor suppression and anti-inflammatory functions. |
| other organism cytoplasm | (GO:0097679) | cellular_component | The cytoplasm of a secondary organism with which the first organism is interacting. |
| disordered domain specific binding | (GO:0097718) | molecular_function | Interacting selectively and non-covalently with a disordered domain of a protein. |
| LEM domain binding | (GO:0097726) | molecular_function | Interacting selectively and non-covalently with a LEM domain. The LEM domain (for lamina-associated polypeptide, emerin, MAN1 domain) is present in a group of nuclear proteins that bind chromatin through interaction of the LEM motif with the conserved DNA crosslinking protein, barrier-to-autointegration factor (BAF). |
| DIM/DIP cell wall layer | (GO:0097735) | cellular_component | A section of the Actinobacterium-type cell wall composed of (phenyl)phthiocerol, phthiodiolone, phthiotriol dimycocerosate, diphthioceranate and other compounds. |
| G-rich strand telomeric DNA binding | (GO:0098505) | molecular_function | Interacting selectively and non-covalently with G-rich, single-stranded, telomere-associated DNA. |
| 2',5-3',5'-cyclic GMP-AMP binding | (GO:0098546) | molecular_function | Interacting selectively and non-covalently with c[G(2',5')pA(2',5')p], a cyclic purine dinucleotide that consists of AMP and GMP units cyclized via 2',5' and 3',5' linkages. |
| collagen fibril binding | (GO:0098633) | molecular_function | Interacting selectively and non-covalently with a collagen fibril. |
| peptidyl-proline 4-dioxygenase binding | (GO:0098650) | molecular_function | Interacting selectively and non-covalently with a peptidyl-proline 4-dioxygenase. |
| FYXD domain binding | (GO:0098750) | molecular_function | Interacting selectively and non-covalently with a FXYD domain. |
| TIMP family protein binding | (GO:0098769) | molecular_function | Interacting selectively and non-covalently with any member of the Tissue inhibitors of metalloproteinases (TIMPs) family. TIMPs are endogenous protein regulators of the matrix metalloproteinase (MMPs) family |
| FBXO family protein binding | (GO:0098770) | molecular_function | Interacting selectively and non-covalently with any member of the FBXO protein family. Members of this family have an F-box protein motif of approximately 50 amino acids that functions as a site of protein-protein interaction. |
| mRNA cap binding | (GO:0098808) | molecular_function | Interacting selectively and non-covalently with a 7-methylguanosine (m7G) group or derivative located at the 5' end of an mRNA molecule. |
| obsolete transcriptional repressor activity, RNA polymerase II activating transcription factor binding | (GO:0098811) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with an RNA polymerase II activating transcription factor and also with the RNA polymerase II basal transcription machinery in order to stop, prevent, or reduce the frequency, rate or extent of transcription. The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent. For more details see https://github.com/geneontology/go-ontology/issues/16053 |
| cytoskeleton of dendritic spine | (GO:0098836) | cellular_component | The portion of the cytoskeleton that lies within a dendritic spine. The actin component of this cytoskeleton is involved in spine head remodelling in response to postsynaptic signalling. |
| sequence-specific single stranded DNA binding | (GO:0098847) | molecular_function | Interacting selectively and non-covalently with single-stranded DNA of a specific nucleotide composition. |
| double-stranded miRNA binding | (GO:0098851) | molecular_function | Interacting selectively and non-covalently with double-stranded miRNA. double-stranded miRNA is formed by processing of pre-miRNA stem-loop structures. |
| viral entry via permeabilization of inner membrane | (GO:0099008) | biological_process | The entry of a non-enveloped virus into the cytoplasm of a host prokaryotic cell, following fusion with the outer membrane, via permeabilization of the plasma (inner) membrane. In the case of some double stranded RNA viruses of prokaryotes this occurs via interaction of a membrane-interacting component of the capsid, leading to depolarization an permeabilization of the plasma membrane. |
| activating signal cointegrator 1 complex | (GO:0099053) | cellular_component | A protein complex that contains TRIP4 (ASC1) and acts a transcriptional coactivator by interacting with transcription factors such as NF-kappa B. In humans this complex has 4 subunits: TRIP4 + ASCC1-3. |
| RNA polymerase II C-terminal domain binding | (GO:0099122) | molecular_function | Interacting selectively and non-covalently with the C-terminal domain (CTD) of the largest subunit of RNA polymerase II. The CTD is comprised of repeats of a heptapeptide with the consensus sequence YSPTSPS. The number of repeats varies with the species and a minimum number of repeats is required for RNAP II function. |
| transforming growth factor beta complex | (GO:0099126) | cellular_component | A protein complex acting as ligand of the transforming growth factor beta receptor complex, typically a homodimer of any of the TFGbeta isoforms. The precursor of TGFbeta proteins is cleaved into mature TGFbeta and the latency-associated peptide (LAP), which remains non-covalently linked to mature TGFbeta rendering it inactive. TGFbeta is activated by dimerisation and dissociation of the LAP. |
| estrogen binding | (GO:0099130) | molecular_function | Interacting selectively and non-covalently with any estrogen. |
| postsynaptic modulation of chemical synaptic transmission | (GO:0099170) | biological_process | Any process, acting in the postsynapse that results in modulation of chemical synaptic transmission. |
| presynaptic modulation of chemical synaptic transmission | (GO:0099171) | biological_process | Any process, acting in the presynapse that results in modulation of chemical synaptic transmission. |
| caveola neck | (GO:0099400) | cellular_component | A membrane microdomain that forms a necklace around the bulb (crater) of a caveola. Intramembrane particles are concentrated in this region and cytoskeletal components, including actin, are highly enriched in the area underlying it. |
| vesicle cytoskeletal trafficking | (GO:0099518) | biological_process | The directed movement of a vesicle along a cytoskeletal fiber such as a microtubule or and actin filament, mediated by motor proteins. |
| dense core granule cytoskeletal transport | (GO:0099519) | biological_process | The directed movement of dense core granules along cytoskeletal fibers, such as microtubules or actin filaments. |
| microtubule lateral binding | (GO:0099609) | molecular_function | Interacting selectively and non-covalently with the side of a microtubule. |
| FMN-binding domain binding | (GO:0101016) | molecular_function | Interacting selectively and non-covalently with the FMN-binding domain of a protein. |
| GATOR1 complex binding | (GO:0106080) | molecular_function | Interacting selectively and non-covalently with the GATOR1 complex. |
| nuclear membrane mitotic spindle pole body tethering complex | (GO:0106084) | cellular_component | A protein complex capable of interacting with the spindle pole body and the nuclear envelope, in order to embed the spindle pole body in the nuclear envelope at fusion sites of the inner and outer nuclear membrane. |
| IkappaB kinase complex binding | (GO:0106137) | molecular_function | Interacting selectively and non-covalently with the IkappaB kinase complex. |
| Sec61 translocon complex binding | (GO:0106138) | molecular_function | Interacting selectively and non-covalently with a Sec61 translocon complex. |
| symbiont cell surface | (GO:0106139) | cellular_component | The cell surface of a secondary, endosymbiont organism with which the first organism is interacting. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. |
| P-TEFb complex binding | (GO:0106140) | molecular_function | Interacting selectively and non-covalently with the P-TEFb complex. |
| CNBH domain intrinsic ligand binding | (GO:0106151) | molecular_function | nteracting selectivity and noncovalently with a cyclic nucleotide mimicking protein motif that is part of the same protein. The CNBHD is a domain on KCNH channels that creates a binding pocket on the KCNH channel that resembles the cyclic nucleotide- binding domain on other ion channels. It binds to a peptide motif that is part of the same protein rather than a cyclic nucleotide. |
| phosphorylated histone binding | (GO:0106153) | molecular_function | Interacting selectively and non-covalently with a histone in which a residue has been modified by phosphorylation. Histones are any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. |
| regulation of actomyosin structure organization | (GO:0110020) | biological_process | Any process that modulates the frequency, rate or extent of the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures containing both actin and myosin or paramyosin. |
| C2 domain binding | (GO:0110036) | molecular_function | Interacting selectively and non-covalently with the C2 domain of a protein, a protein structural domain involved in targeting proteins to cell membranes. |
| apical constriction involved in ventral furrow formation | (GO:0110072) | biological_process | The actin-mediated process that results in contraction of the apical end of a polarized columnar epithelial cell, contributing to formation of a ventral indentation (furrow) from the blastoderm epithelium, which is internalized to form a tube in the interior of the embryo, marking the start of gastrulation. |
| mitotic actomyosin contractile ring | (GO:0110085) | cellular_component | A cytoskeletal structure composed of actin filaments, myosin, and myosin-associated proteins that forms beneath the plasma membrane of many cells, including animal cells and yeast cells, in a plane perpendicular to the axis of the mitotic spindle, i.e. the cell division plane. Ring contraction is associated with centripetal growth of the membrane that divides the cytoplasm of the two future daughter cells. In animal cells, the mitotic contractile ring is located inside the plasma membrane at the location of the cleavage furrow. In budding fungal cells, e.g. mitotic S. cerevisiae cells, the mitotic contractile ring forms beneath the plasma membrane at the mother-bud neck before mitosis. |
| meiotic actomyosin contractile ring | (GO:0110086) | cellular_component | A cytoskeletal structure composed of actin filaments, myosin, and myosin-associated proteins that forms beneath the plasma membrane of many cells, including animal cells and yeast cells, in a plane perpendicular to the axis of the meiotic spindle, i.e. the cell division plane. Ring contraction is associated with centripetal growth of the membrane that divides the cytoplasm of the two future daughter cells. In animal cells, the meiotic contractile ring is located inside the plasma membrane at the location of the cleavage furrow. In fungal cells, the meiotic contractile ring forms beneath the plasma membrane of the prospore envelope in preparation for completing cytokinesis. |
| glucagon binding | (GO:0120022) | molecular_function | Interacting selectively and non-covalently with glucagon, a polypeptide hormone involved in glucose response. It is produced by pancreatic alpha cells and raises the concentration of glucose in the blood. |
| somatostatin binding | (GO:0120023) | molecular_function | Interacting selectively and non-covalently with somatostatin, a polypeptide hormone involved in regulating pancreatic alpha and pancreatic beta cells and controlling growth hormone secretion as well as many other functions. Somatostatin is produced by several cell types including pancreatic delta cells. There are several different mature forms of somatostatin. |
| glucagon-like peptide binding | (GO:0120024) | molecular_function | Interacting selectively and non-covalently with glucagon-like peptide, a antihyperglycemic hormone. Glucagon-like peptide is derived from the glucagon gene produced by pancreatic alpha cells. |
| stereocilium shaft | (GO:0120043) | cellular_component | The shaft comprises the majority of the length of the stereocilium. This region is notable for the extreme stability of actin filaments, which are highly crosslinked into a parallel bundle. |
| stereocilium base | (GO:0120044) | cellular_component | The tapered base of the stereocilium adjacent to where it joins the hair cell body. This region contains a rootlet comprised of bundled actin filaments which spans the joint and stabilizes the stereocilium. |
| actomyosin contractile ring, intermediate layer | (GO:0120105) | cellular_component | The region of the actomyosin ring in between the proximal layer and the actin filament layer. This region contains the accessory protein network, some actin filaments and connections between the proximal layer and the actin filament layer. |
| sulfatide binding | (GO:0120146) | molecular_function | Interacting selectively and non-covalently with sulfatide, also known as 3-O-sulfogalactosylceramide, SM4, or sulfated galactocerebroside. Sulfatide is a class of sulfoglycolipid, which are glycolipids that contain a sulfate group. |
| calcium-dependent outer dynein arm binding | (GO:0120152) | molecular_function | Interacting selectively and non-covalently with an outer dynein arm in the presence of calcium. |
| calcium-dependent carbohydrate binding | (GO:0120153) | molecular_function | Interacting selectively and non-covalently with any carbohydrate in the presence of calcium. |
| intraciliary transport particle A binding | (GO:0120160) | molecular_function | Interacting selectively and non-covalently with an intraciliary transport particle A (IFT A) complex. |
| intraciliary transport particle B binding | (GO:0120170) | molecular_function | Interacting selectively and non-covalently with an intraciliary transport particle B (IFT B) complex. |
| adherens junction disassembly | (GO:0120179) | biological_process | The disaggregation of an adherens junction into its constituent components. An adherens junction is a cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments. |
| focal adhesion disassembly | (GO:0120181) | biological_process | The disaggregation of a focal adhesion into its constituent components. A focal adhesion is a complex of intracellular signaling and structural proteins that provides a structural link between the internal actin cytoskeleton and the ECM, and also functions as a locus of signal transduction activity. |
| modification-dependent protein binding | (GO:0140030) | molecular_function | Interacting selectively and non-covalently with a protein upon post-translation modification of the target protein. |
| phosphorylation-dependent protein binding | (GO:0140031) | molecular_function | Interacting selectively and non-covalently with a protein upon phosphorylation of the target protein. |
| glycosylation-dependent protein binding | (GO:0140032) | molecular_function | Interacting selectively and non-covalently with a protein upon glycosylation of the target protein. |
| acetylation-dependent protein binding | (GO:0140033) | molecular_function | Interacting selectively and non-covalently with a protein upon acetylation of the target protein. |
| methylation-dependent protein binding | (GO:0140034) | molecular_function | Interacting selectively and non-covalently with a protein upon methylation of the target protein. |
| ubiquitination-like modification-dependent protein binding | (GO:0140035) | molecular_function | Interacting selectively and non-covalently with a protein upon modification by a ubiquitin-like protein of the target protein. |
| ubiquitin-dependent protein binding | (GO:0140036) | molecular_function | Interacting selectively and non-covalently with a protein upon ubiquitination of the target protein. |
| sumo-dependent protein binding | (GO:0140037) | molecular_function | Interacting selectively and non-covalently with a protein upon sumoylation of the target protein. |
| glycosylated region protein binding | (GO:0140081) | molecular_function | Interacting selectively and non-covalently with a glycosylated region of a protein. |
| Golgi transport complex binding | (GO:0140164) | molecular_function | Interacting selectively and non-covalently with the Golgi transport complex, a multisubunit tethering complex of the CATCHR family. |
| SLAC complex | (GO:0140224) | cellular_component | A protein complex that regulates Arp2/3 complex-mediated actin nucleation. |
| PRC1 complex binding | (GO:0140259) | molecular_function | Interacting selectively and non-covalently with a PRC1 complex. |
| mitochondrial proton-transporting ATP synthase complex binding | (GO:0140260) | molecular_function | Interacting selectively and non-covalently with a mitochondrial proton-transporting ATP synthase complex. |
| mRNA cap binding complex binding | (GO:0140262) | molecular_function | Interacting selectively and non-covalently with a mRNA cap binding complex. |
| oligopeptide binding | (GO:1900750) | molecular_function | Interacting selectively and non-covalently with an oligopeptide. |
| ubiquinone-6 binding | (GO:1900995) | molecular_function | Interacting selectively and non-covalently with ubiquinone-6. Ubiquinone-6 is a ubiquinone compound having a (2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl substituent at position 2. |
| salicylic acid binding | (GO:1901149) | molecular_function | Interacting selectively and non-covalently with salicylic acid. |
| nucleoside phosphate binding | (GO:1901265) | molecular_function | Interacting selectively and non-covalently with nucleoside phosphate. |
| catecholamine binding | (GO:1901338) | molecular_function | Interacting selectively and non-covalently with catecholamine. |
| tungstate binding | (GO:1901359) | molecular_function | Interacting selectively and non-covalently with tungstate. |
| heterocyclic compound binding | (GO:1901363) | molecular_function | Interacting selectively and non-covalently with heterocyclic compound. |
| hypochlorite binding | (GO:1901531) | molecular_function | Interacting selectively and non-covalently with hypochlorite. |
| fatty acid derivative binding | (GO:1901567) | molecular_function | Interacting selectively and non-covalently with fatty acid derivative. |
| dethiobiotin binding | (GO:1901602) | molecular_function | Interacting selectively and non-covalently with dethiobiotin. |
| phosphatidylglycerol binding | (GO:1901611) | molecular_function | Interacting selectively and non-covalently with phosphatidylglycerol. |
| cardiolipin binding | (GO:1901612) | molecular_function | Interacting selectively and non-covalently with cardiolipin. |
| XTP binding | (GO:1901640) | molecular_function | Interacting selectively and non-covalently with XTP. |
| ITP binding | (GO:1901641) | molecular_function | Interacting selectively and non-covalently with ITP. |
| sulfur compound binding | (GO:1901681) | molecular_function | Interacting selectively and non-covalently with a sulfur compound. |
| proton binding | (GO:1901691) | molecular_function | Interacting selectively and non-covalently with proton. |
| leptomycin B binding | (GO:1901707) | molecular_function | Interacting selectively and non-covalently with leptomycin B. |
| proline binding | (GO:1901973) | molecular_function | Interacting selectively and non-covalently with proline. |
| phosphatidylinositol phosphate binding | (GO:1901981) | molecular_function | Interacting selectively and non-covalently with phosphatidylinositol phosphate. |
| maltose binding | (GO:1901982) | molecular_function | Interacting selectively and non-covalently with maltose. |
| (25S)-Delta(4)-dafachronate binding | (GO:1902051) | molecular_function | Interacting selectively and non-covalently with (25S)-Delta(4)-dafachronate. |
| (25S)-Delta(7)-dafachronate binding | (GO:1902052) | molecular_function | Interacting selectively and non-covalently with (25S)-Delta(7)-dafachronate. |
| calcitriol binding | (GO:1902098) | molecular_function | Interacting selectively and non-covalently with calcitriol. Calcitriol (1,25-dihydroxycholecalciferol) is the hormonally active form of vitamin D3. |
| calcidiol binding | (GO:1902118) | molecular_function | Interacting selectively and non-covalently with calcidiol. |
| lithocholic acid binding | (GO:1902121) | molecular_function | Interacting selectively and non-covalently with lithocholic acid. |
| chenodeoxycholic acid binding | (GO:1902122) | molecular_function | Interacting selectively and non-covalently with chenodeoxycholic acid. |
| 5-O-phosphono-alpha-D-ribofuranosyl diphosphate binding | (GO:1902248) | molecular_function | Interacting selectively and non-covalently with 5-O-phosphono-alpha-D-ribofuranosyl diphosphate. |
| IMP binding | (GO:1902249) | molecular_function | Interacting selectively and non-covalently with IMP, inosine monophosphate. |
| D3 vitamins binding | (GO:1902271) | molecular_function | Interacting selectively and non-covalently with D3 vitamins. |
| hydroquinone binding | (GO:1902314) | molecular_function | Interacting selectively and non-covalently with hydroquinone. |
| ceramide 1-phosphate binding | (GO:1902387) | molecular_function | Interacting selectively and non-covalently with ceramide 1-phosphate. |
| riboflavin binding | (GO:1902444) | molecular_function | Interacting selectively and non-covalently with riboflavin. |
| L-cysteine binding | (GO:1902485) | molecular_function | Interacting selectively and non-covalently with L-cysteine. |
| sn-glycerol 3-phosphate binding | (GO:1902516) | molecular_function | Interacting selectively and non-covalently with sn-glycerol 3-phosphate. |
| carbon dioxide binding | (GO:1902670) | molecular_function | Interacting selectively and non-covalently with carbon dioxide. |
| phosphatidylinositol bisphosphate binding | (GO:1902936) | molecular_function | Interacting selectively and non-covalently with phosphatidylinositol bisphosphate. |
| cupric ion binding | (GO:1903135) | molecular_function | Interacting selectively and non-covalently with cupric ion, copper(2+). |
| cuprous ion binding | (GO:1903136) | molecular_function | Interacting selectively and non-covalently with cuprous ion, copper(1+). |
| anchoring of the mitotic actomyosin contractile ring to the plasma membrane | (GO:1903474) | biological_process | A process that maintains the mitotic actinomyosin contractile ring at the plasma membrane. |
| melibiose binding | (GO:1903777) | molecular_function | Interacting selectively and non-covalently with melibiose. |
| cortisol binding | (GO:1903794) | molecular_function | Interacting selectively and non-covalently with cortisol. |
| corticosterone binding | (GO:1903875) | molecular_function | Interacting selectively and non-covalently with corticosterone. |
| 11-deoxycortisol binding | (GO:1903876) | molecular_function | Interacting selectively and non-covalently with 11-deoxycortisol. |
| 21-deoxycortisol binding | (GO:1903877) | molecular_function | Interacting selectively and non-covalently with 21-deoxycortisol. |
| 11-deoxycorticosterone binding | (GO:1903878) | molecular_function | Interacting selectively and non-covalently with 11-deoxycorticosterone. |
| 11beta-hydroxyprogesterone binding | (GO:1903879) | molecular_function | Interacting selectively and non-covalently with 11beta-hydroxyprogesterone. |
| 17alpha-hydroxyprogesterone binding | (GO:1903880) | molecular_function | Interacting selectively and non-covalently with 17alpha-hydroxyprogesterone. |
| estradiol binding | (GO:1903924) | molecular_function | Interacting selectively and non-covalently with estradiol. |
| platinum binding | (GO:1904012) | molecular_function | Interacting selectively and non-covalently with platinum. |
| xenon atom binding | (GO:1904013) | molecular_function | Interacting selectively and non-covalently with xenon atom. |
| S-adenosyl-L-methionine binding | (GO:1904047) | molecular_function | Interacting selectively and non-covalently with S-adenosyl-L-methionine. |
| ascr#2 binding | (GO:1904067) | molecular_function | Interacting selectively and non-covalently with ascr#2. |
| BAT3 complex binding | (GO:1904288) | molecular_function | Interacting selectively and non-covalently with a BAT3 complex. |
| heparan sulfate binding | (GO:1904399) | molecular_function | Interacting selectively and non-covalently with heparan sulfate. |
| melatonin binding | (GO:1904408) | molecular_function | Interacting selectively and non-covalently with melatonin. |
| synthetic cannabinoid binding | (GO:1904483) | molecular_function | Interacting selectively and non-covalently with synthetic cannabinoid. |
| Ac-Asp-Glu binding | (GO:1904492) | molecular_function | Interacting selectively and non-covalently with Ac-Asp-Glu. |
| tetrahydrofolyl-poly(glutamate) polymer binding | (GO:1904493) | molecular_function | Interacting selectively and non-covalently with tetrahydrofolyl-poly(glutamate) polymer. |
| MgATP(2-) binding | (GO:1904517) | molecular_function | Interacting selectively and non-covalently with MgATP(2-). |
| prostaglandin binding | (GO:1904593) | molecular_function | Interacting selectively and non-covalently with prostaglandin. |
| advanced glycation end-product binding | (GO:1904599) | molecular_function | Interacting selectively and non-covalently with advanced glycation end-product. |
| alpha-aminoacyl-tRNA binding | (GO:1904678) | molecular_function | Interacting selectively and non-covalently with alpha-aminoacyl-tRNA. |
| beta-catenin destruction complex binding | (GO:1904713) | molecular_function | Interacting selectively and non-covalently with a beta-catenin destruction complex. |
| octanoic acid binding | (GO:1904767) | molecular_function | Interacting selectively and non-covalently with octanoic acid. |
| all-trans-retinol binding | (GO:1904768) | molecular_function | Interacting selectively and non-covalently with all-trans-retinol. |
| isopentadecanoic acid binding | (GO:1904769) | molecular_function | Interacting selectively and non-covalently with isopentadecanoic acid. |
| TORC2 complex binding | (GO:1904841) | molecular_function | Interacting selectively and non-covalently with a TORC2 complex. |
| proteasome core complex binding | (GO:1904854) | molecular_function | Interacting selectively and non-covalently with a proteasome core complex. |
| proteasome regulatory particle binding | (GO:1904855) | molecular_function | Interacting selectively and non-covalently with a proteasome regulatory particle. |
| MCM complex binding | (GO:1904931) | molecular_function | Interacting selectively and non-covalently with an MCM complex. |
| guanosine binding | (GO:1905108) | molecular_function | Interacting selectively and non-covalently with guanosine. |
| RISC complex binding | (GO:1905172) | molecular_function | Interacting selectively and non-covalently with a RISC complex. |
| Swi5-Sfr1 complex binding | (GO:1905334) | molecular_function | Interacting selectively and non-covalently with a Swi5-Sfr1 complex. |
| retromer complex binding | (GO:1905394) | molecular_function | Interacting selectively and non-covalently with a retromer complex. |
| acetyl-CoA binding | (GO:1905502) | molecular_function | Interacting selectively and non-covalently with acetyl-CoA. |
| polysome binding | (GO:1905538) | molecular_function | Interacting selectively and non-covalently with a polysome. |
| ganglioside GM1 binding | (GO:1905573) | molecular_function | Interacting selectively and non-covalently with ganglioside GM1. |
| ganglioside GM2 binding | (GO:1905574) | molecular_function | Interacting selectively and non-covalently with ganglioside GM2. |
| ganglioside GM3 binding | (GO:1905575) | molecular_function | Interacting selectively and non-covalently with ganglioside GM3. |
| ganglioside GT1b binding | (GO:1905576) | molecular_function | Interacting selectively and non-covalently with ganglioside GT1b. |
| ganglioside GP1c binding | (GO:1905577) | molecular_function | Interacting selectively and non-covalently with ganglioside GP1c. |
| resveratrol binding | (GO:1905594) | molecular_function | Interacting selectively and non-covalently with resveratrol. |
| SCF ubiquitin ligase complex binding | (GO:1905761) | molecular_function | Interacting selectively and non-covalently with a SCF ubiquitin ligase complex. |
| CCR4-NOT complex binding | (GO:1905762) | molecular_function | Interacting selectively and non-covalently with a CCR4-NOT complex. |
| MTREC complex binding | (GO:1905763) | molecular_function | Interacting selectively and non-covalently with a MTREC complex. |
| 8-hydroxy-2'-deoxyguanosine DNA binding | (GO:1905773) | molecular_function | Interacting selectively and non-covalently with 8-hydroxy-2'-deoxyguanosine an oxidized purine residue found in damaged DNA. |
| talin binding | (GO:1990147) | molecular_function | Interacting selectively and non-covalently with a talin, a family of related cytoskeletal proteins that play a role in assembly of actin filaments and migration of various cell types. |
| single-strand break-containing DNA binding | (GO:1990165) | molecular_function | Interacting selectively and non-covalently with damaged DNA containing single-strand breaks (SSBs). |
| EH domain binding | (GO:1990175) | molecular_function | Interacting selectively and non-covalently with an EH domain of a protein. The EH stand for Eps15 homology. This was originally identified as a motif present in three copies at the NH2-termini of Eps15 and of the related molecule Eps15R. |
| euchromatin binding | (GO:1990188) | molecular_function | Interacting selectively and non-covalently with euchromatin, a dispersed and relatively uncompacted form of chromatin. |
| histone methyltransferase binding | (GO:1990226) | molecular_function | Interacting selectively and non-covalently with a histone methyltransferase enzyme. |
| steroid hormone binding | (GO:1990239) | molecular_function | Interacting selectively and non-covalently with a steroid hormone. |
| N6-methyladenosine-containing RNA binding | (GO:1990247) | molecular_function | Interacting selectively and non-covalently with an RNA molecule modified by N6-methyladenosine (m6A), a modification present at internal sites of mRNAs and some non-coding RNAs. |
| Syp1 complex | (GO:1990252) | cellular_component | A protein complex that contributes to the endocytic process and bud growth in yeast. It is involved in the precise timing of actin assembly during endocytosis. |
| keratin filament binding | (GO:1990254) | molecular_function | Interacting selectively and non-covalently with a keratin filament, an intermediate filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. |
| RNA polymerase II C-terminal domain phosphoserine binding | (GO:1990269) | molecular_function | Interacting selectively and non-covalently with phosphorylated serine residues in the C-terminal domain of RNA polymerase II. |
| preribosome binding | (GO:1990275) | molecular_function | Interacting selectively and non-covalently with any part of a preribosome. |
| cellulosome binding | (GO:1990300) | molecular_function | Interacting selectively and non-covalently with the cellulosome, an extracellular multi-enzyme complex containing several enzymes aligned on a non-catalytic scaffolding that functions to hydrolyze plant cell wall polysaccharides. |
| type-I dockerin domain binding | (GO:1990308) | molecular_function | Interacting selectively and non-covalently with a type-I dockerin domain of a protein. Type-I dockerin domain is the binding partner of type-1 cohesin domain. |
| type-II dockerin domain binding | (GO:1990309) | molecular_function | Interacting selectively and non-covalently with a type-II dockerin domain of a protein. Type-II dockerin domain is the binding partner of type-II cohesin domain. |
| type-III dockerin domain binding | (GO:1990310) | molecular_function | Interacting selectively and non-covalently with a type-III dockerin domain of a protein. Type-III dockerin domain is the binding partner of type-III cohesin domain. |
| type-I cohesin domain binding | (GO:1990311) | molecular_function | Interacting selectively and non-covalently with a type-I cohesin domain of a protein. Type-I cohesin domain is the binding partner of type-I dockerin domain. |
| type-II cohesin domain binding | (GO:1990312) | molecular_function | Interacting selectively and non-covalently with a type-II cohesin domain of a protein. Type-II cohesin domain is the binding partner of type-II dockerin domain. |
| type-III cohesin domain binding | (GO:1990313) | molecular_function | Interacting selectively and non-covalently with a type-III cohesin domain of a protein. Type-III cohesin domain is the binding partner of type-III dockerin domain. |
| terminal web | (GO:1990357) | cellular_component | An actin-rich cytoskeletal network located beneath the microvilli of the apical plasma membrane of polarized epithelial cells. In addition to actin filaments, the terminal web may contain actin-binding proteins, myosin motor proteins, and intermediate filaments. The terminal web can function as a contractile structure that influences the spatial distribution of microvilli as well as the development and morphogenesis of tissues containing polarized epithelial cells. |
| ubiquitin-specific protease binding | (GO:1990381) | molecular_function | Interacting selectively and non-covalently with a ubiquitin-specific protease. |
| mitochondrial ribosomal large subunit rRNA binding | (GO:1990400) | molecular_function | Interacting selectively and non-covalently with the mitochondrial large ribosomal subunit RNA (LSU rRNA), a constituent of the mitochondrial large ribosomal subunit. |
| protein antigen binding | (GO:1990405) | molecular_function | Interacting selectively and non-covalently with a protein antigen. |
| calcitonin gene-related peptide binding | (GO:1990407) | molecular_function | Interacting selectively and non-covalently with calcitonin gene-related peptide (CGRP). |
| adrenomedullin binding | (GO:1990409) | molecular_function | Interacting selectively and non-covalently with adrenomedullin (AM). |
| extracellular matrix protein binding | (GO:1990430) | molecular_function | Interacting selectively and non-covalently with a protein that is part of an extracellular matrix. |
| F-box domain binding | (GO:1990444) | molecular_function | Interacting selectively and non-covalently with an F-box domain of a protein. |
| U1 snRNP binding | (GO:1990446) | molecular_function | Interacting selectively and non-covalently with any part of a U1 small nuclear ribonucleoprotein particle. |
| U2 snRNP binding | (GO:1990447) | molecular_function | Interacting selectively and non-covalently with any part of a U2 small nuclear ribonucleoprotein particle. |
| exon-exon junction complex binding | (GO:1990448) | molecular_function | Interacting selectively and non-covalently with an exon-exon junction complex, a protein complex deposited by the spliceosome upstream of messenger RNA exon-exon junctions. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay. |
| linear polyubiquitin binding | (GO:1990450) | molecular_function | Interacting selectively and non-covalently with a linear polymer of ubiquitin. Linear ubiquitin polymers are formed by linking the amino-terminal methionine (M1) of one ubiquitin molecule to the carboxy-terminal glycine (G76) of the next. |
| lipooligosaccharide binding | (GO:1990458) | molecular_function | Interacting selectively and non-covalently with lipooligosaccharide. Lipooligosaccharides (LOSs) are the major glycolipids expressed on mucosal Gram-negative bacteria. |
| transferrin receptor binding | (GO:1990459) | molecular_function | Interacting selectively and non-covalently with the transferrin receptor. |
| leptin receptor binding | (GO:1990460) | molecular_function | Interacting selectively and non-covalently with the leptin receptor. |
| Rhino-Deadlock-Cutoff Complex | (GO:1990469) | cellular_component | Protein complex found in Drosophila consisting of the gene products of cuff, del and rhi. It regulates the licensing of transcription of dual-strand PIWI interacting RNA (piRNA) source loci by binding to dual-strand-cluster chromatin, probably via the H3K9me3-binding activity of Rhi. Rhi binding brings the putative termination cofactor Cuff in close proximity to the nascent piRNA precursor transcript which it appears to protect from degradation. |
| piRNA cluster binding | (GO:1990470) | molecular_function | Interacting selectively and non-covalently with piRNA clusters, double-stranded DNA regions that give rise to PIWI-interacting RNAs (piRNAs). |
| piRNA uni-strand cluster binding | (GO:1990471) | molecular_function | Interacting selectively and non-covalently with uni-strand piRNA clusters, double-stranded DNA regions that give rise to PIWI-interacting RNAs (piRNAs) that map predominantly to only one strand and exhibit hallmarks of canonical Pol II transcription. Uni-strand piRNA clusters are found in many taxa. |
| piRNA dual-strand cluster binding | (GO:1990472) | molecular_function | Interacting selectively and non-covalently with dual-strand piRNA clusters, double-stranded DNA regions that give rise to PIWI-interacting RNAs (piRNAs) where piRNAs originate from both DNA strands via noncanonical transcription. |
| ciliary targeting signal binding | (GO:1990473) | molecular_function | Interacting selectively and non-covalently with a ciliary targeting sequence, a specific peptide sequence that acts as a signal to localize a membrane protein to the ciliary membrane. |
| mitotic cell cycle checkpoint inhibiting CAR assembly | (GO:1990492) | biological_process | A Mad2-dependent mitotic cell cycle checkpoint which delays cytokinetic actinomycin ring assembly if there is a delay in early M-phase. |
| BIR domain binding | (GO:1990525) | molecular_function | Interacting selectively and non-covalently with a Baculovirus Inhibitor of apoptosis protein Repeat (BIR) domain. |
| obsolete DNA methyltransferase binding | (GO:1990560) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with a DNA methyltransferase. This term was obsoleted at the TermGenie Gatekeeper stage. |
| cardiac Troponin complex | (GO:1990584) | cellular_component | A complex of accessory proteins (cardiac troponin T, cardiac troponin I and cardiac troponin C) found associated with actin in cardiac muscle thin filaments; involved in calcium regulation important for muscle contraction. |
| nascent polypeptide-associated complex binding | (GO:1990593) | molecular_function | Interacting selectively and non-covalently with the nascent polypeptide-associated complex, which is a heterodimeric protein complex that can reversibly bind to ribosomes and is located in direct proximity to newly synthesized polypeptide chains as they emerge from the ribosome. |
| AIP1-IRE1 complex | (GO:1990597) | cellular_component | A protein complex consisting of IRE1 (inositol-requiring enzyme-1) bound to AIP1 (ASK1-interacting protein 1/DAB2-interacting protein). |
| GU repeat RNA binding | (GO:1990605) | molecular_function | Interacting selectively and non-covalently with an RNA molecule containing GU repeats. |
| Kelch-containing formin regulatory complex | (GO:1990615) | cellular_component | A protein complex that regulates actin cable formation, polarized cell growth, and cytokinesis in a formin-dependent manner. In S. cerevisiae the complex is composed of Bud14p and two Kelch family proteins, Kel1p and Kel2p. |
| ErbB-4 class receptor binding | (GO:1990631) | molecular_function | Interacting selectively and non-covalently with the protein-tyrosine kinase receptor ErbB-4/HER4. |
| protein phosphatase 5 binding | (GO:1990634) | molecular_function | Interacting selectively and non-covalently with the enzyme protein phosphatase 5. |
| 4 iron, 3 sulfur cluster binding | (GO:1990655) | molecular_function | Interacting selectively and non-covalently with a 4 iron, 3 sulfur (4Fe-3S) cluster, an uncommon iron-sulfur cluster with unique properties found in oxygen-tolerant Ni-Fe hydrogenases of various bacteria. |
| mRNA CDS binding | (GO:1990715) | molecular_function | Interacting selectively and non-covalently with the coding sequence (CDS) of an mRNA molecule. |
| growth cone lamellipodium | (GO:1990761) | cellular_component | A thin sheetlike process extended by the leading edge of an axonal or dendritic growth cone; contains a dense meshwork of actin filaments. |
| arrestin family protein binding | (GO:1990763) | molecular_function | Interacting selectively and non-covalently with any member of the arrestin family, proteins involved in agonist-mediated desensitization of G protein-coupled receptors. |
| myofibroblast contraction | (GO:1990764) | biological_process | The actin filament-based process in which cytoplasmic actin filaments slide past one another resulting in contraction of a myofibroblast. |
| protein tyrosine kinase binding | (GO:1990782) | molecular_function | Interacting selectively and non-covalently with protein tyrosine kinase. |
| F-bar domain binding | (GO:1990808) | molecular_function | Interacting selectively and non-covalently with an F-BAR domain of a protein, a domain of about 60 residues that occurs in a wide range of cytoskeletal proteins. |
| sequence-specific mRNA binding | (GO:1990825) | molecular_function | Interacting selectively and non-covalently with messenger RNA (mRNA) of a specific nucleotide composition or a specific sequence motif. |
| deaminase binding | (GO:1990827) | molecular_function | Interacting selectively and non-covalently with an enzyme that catalyzes the removal of an amino group from a substrate, producing ammonia (NH3). |
| C-rich single-stranded DNA binding | (GO:1990829) | molecular_function | Interacting selectively and non-covalently with C-rich, single-stranded DNA. |
| sequence-specific double-stranded DNA binding | (GO:1990837) | molecular_function | Interacting selectively and non-covalently with double-stranded DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA, e.g. promotor binding or rDNA binding. |
| promoter-specific chromatin binding | (GO:1990841) | molecular_function | Interacting selectively and non-covalently with a section of chromatin that is associated with gene promoter sequences of DNA. |
| methionyl-initiator methionine tRNA binding | (GO:1990856) | molecular_function | Interacting selectively and non-covalently with methionine-initator methionine tRNA. |
| obsolete protein serine/threonine kinase binding | (GO:1990885) | molecular_function | OBSOLETE. Interacting selectively and non-covalently with a protein serine/threonine kinase. This term was obsoleted at the TermGenie Gatekeeper stage. |
| H4K20me3 modified histone binding | (GO:1990889) | molecular_function | Interacting selectively and non-covalently with a histone H4 in which the lysine residue at position 20 has been modified by trimethylation. |
| netrin receptor binding | (GO:1990890) | molecular_function | Interacting selectively and non-covalently with a netrin receptor. |
| nuclear membrane proteasome anchor | (GO:1990919) | molecular_function | Interacting selectively and non-covalently with a proteasome complex and a nuclear inner membrane, in order to maintain the nuclear membrane localization of the proteasome. |
| 5.8S rRNA binding | (GO:1990932) | molecular_function | Interacting selectively and non-covalently with 5.8S ribosomal RNA, a eukaryotic ribosomal RNA which forms a complex with 28S RNA. |
| splicing factor binding | (GO:1990935) | molecular_function | Interacting selectively and non-covalently with any protein involved in the process of removing sections of the primary RNA transcript to form the mature form of the RNA. |
| mating type region replication fork barrier binding | (GO:1990943) | molecular_function | Interacting selectively and non-covalently with the replication fork barrier found in the mating type region of fission yeast. |
| obsolete manchette assembly | (GO:1990951) | biological_process | OBSOLETE. The assembly and organization of the manchette, a tubular array of microtubules, possibly also containing actin filaments, that extends from the perinuclear ring surrounding the spermatid nucleus to the flagellar axoneme. This term was obsoleted at the TermGenie Gatekeeper stage. |
| intramanchette transport | (GO:1990953) | biological_process | The movement of vesicles and protein complexes carried out by molecular motors, kinesins and dynein, along the microtubule tracks within the manchette and by myosin along actin filaments. |
| G-rich single-stranded DNA binding | (GO:1990955) | molecular_function | Interacting selectively and non-covalently with G-rich, single-stranded DNA. |
| trans-activation response element binding | (GO:1990970) | molecular_function | Interacting selectively and non-covalently with a trans-activation response (TAR) element, a hairpin RNA structure located at the 5' end of all HIV-1 transcripts, and which is required for trans-activation of a viral promoter. |
| xylan binding | (GO:2001062) | molecular_function | Interacting selectively and non-covalently with xylan. |
| glucomannan binding | (GO:2001063) | molecular_function | Interacting selectively and non-covalently with glucomannan. |
| cellooligosaccharide binding | (GO:2001064) | molecular_function | Interacting selectively and non-covalently with cellooligosaccharide. |
| mannan binding | (GO:2001065) | molecular_function | Interacting selectively and non-covalently with mannan. |
| amylopectin binding | (GO:2001066) | molecular_function | Interacting selectively and non-covalently with amylopectin. |
| pullulan binding | (GO:2001067) | molecular_function | Interacting selectively and non-covalently with pullulan. |
| arabinoxylan binding | (GO:2001068) | molecular_function | Interacting selectively and non-covalently with arabinoxylan. |
| glycogen binding | (GO:2001069) | molecular_function | Interacting selectively and non-covalently with glycogen. |
| starch binding | (GO:2001070) | molecular_function | Interacting selectively and non-covalently with starch. |
| maltoheptaose binding | (GO:2001071) | molecular_function | Interacting selectively and non-covalently with maltoheptaose. |
| galactomannan binding | (GO:2001072) | molecular_function | Interacting selectively and non-covalently with galactomannan. |
| cyclodextrin binding | (GO:2001073) | molecular_function | Interacting selectively and non-covalently with cyclodextrin. |
| (1->3),(1->4)-beta-glucan binding | (GO:2001077) | molecular_function | Interacting selectively and non-covalently with (1->3),(1->4)-beta-glucan. |
| (1->6)-beta-D-glucan binding | (GO:2001078) | molecular_function | Interacting selectively and non-covalently with (1->6)-beta-D-glucan. |
| beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-D-Glc binding | (GO:2001079) | molecular_function | Interacting selectively and non-covalently with beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-D-Glc. |
| chitosan binding | (GO:2001080) | molecular_function | Interacting selectively and non-covalently with chitosan. |
| (1->4)-beta-D-galactan binding | (GO:2001081) | molecular_function | Interacting selectively and non-covalently with (1->4)-beta-D-galactan. |
| inulin binding | (GO:2001082) | molecular_function | Interacting selectively and non-covalently with inulin. |
| alpha-D-glucan binding | (GO:2001083) | molecular_function | Interacting selectively and non-covalently with alpha-D-glucan. |
| L-arabinofuranose binding | (GO:2001084) | molecular_function | Interacting selectively and non-covalently with L-arabinofuranose. |
| arabinogalactan binding | (GO:2001085) | molecular_function | Interacting selectively and non-covalently with arabinogalactan. |
| camalexin binding | (GO:2001147) | molecular_function | Interacting selectively and non-covalently with camalexin. |
| quercitrin binding | (GO:2001227) | molecular_function | Interacting selectively and non-covalently with quercitrin. |
