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Title | THE KB DNA SEQUENCE FROM THE HLV-LTR FUNCTIONS AS AN ALLOSTERIC REGULATOR OF HIV TRANSCRIPTION | |
PDB code | 1LEI (PDB summary) | |
NDB code | PD0310 (NDB atlas) | |
Duplex length | 16 base pairs | |
Protein | NF-KB, Transcription Factor, DNA binding domain: Rel homology region |
Model | sigma2 / Å2 | Geometrical parameters |
Plane | 0.058 | |
Straight line (x-axis) | 3.777 | |
Arc | 0.196 | Radius of curvature: r = 64 Å |
Kinked line | 0.295 | Kink angle: alpha = 25° Lengths of straight segments: l1 = 7 bp, l2 = 9 bp |
Double kinked line | 0.144 | Kink angles: alpha1 = 17°, alpha2 = 14° Twist angle: omega = -14° Lengths of straight segments: l1 = 5 bp, l2 = 5 bp, l3 = 6 bp |