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Sequence, Chains, Units

Title RNA DECAMER DUPLEX WITH EIGHT 2'-5'-LINKAGES
Keywords 2'-5'-LINKAGE, RNA, PLANT PROTEIN
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5TDK     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 10 212 0
2  RNA    B 10 212 0
3  Ligand   RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3')  A 4 0 4
4  Ligand   RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3')  B 1 0 1
5 Water     66 0 66
total       91 424 71

Nucleic acids
Unit 1   C1 C2 G3 G4 C5 G6 C7 C8 G9 G10
Unit 2   C1 C2 G3 G4 C5 G6 C7 C8 G9 G10

Ligands
Unit 3   SR101 SR102 SR103 SR104
Unit 4   SR101

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany