5TDK - JenaLib

Title :   RNA DECAMER DUPLEX WITH EIGHT 2'-5'-LINKAGES

Authors :   Z. Luo, J. Sheng

Date :   19 Sep 16 (Deposition) - 11 Jan 17 (Release) - 03 May 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.43

Chains :   Asym./Biol. Unit : A,B

Keywords :   2'-5'-Linkage, Rna, Plant Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Shen, Z. Luo, H. Liu, R. Wang, S. Zhang, J. Gan, J. Sheng
Structural Insights Into Rna Duplexes With Multiple 2 -5 -Linkages.
Nucleic Acids Res. V. 45 3537 2017
PubMed-ID: 28034958 | Reference-DOI: 10.1093/NAR/GKW1307

Compounds

*Molecule 1 - RNA (5'-R(CPCPGPGPCPGPCPCPGPG)-3')*
	Chains	:	A, B
	Engineered	:	YES
	Organism Scientific	:	UNIDENTIFIED
	Organism Taxid	:	32644
	Other Details	:	CHEMICALLY SYNTHESIZED BY SOLID PHASE SYNTHESIS AND PURIFIED BY HPLC
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 5)

Sites (9, 9)

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HOH A:220 , HOH A:230 , HOH A:232 , HOH A:237 , HOH A:240	binding site for residue SR A 101
2	AC2	SOFTWARE	HOH A:218 , HOH A:224 , HOH A:227 , HOH A:239 , HOH B:218 , HOH B:226	binding site for residue SR A 102
3	AC3	SOFTWARE	HOH A:233 , HOH B:225	binding site for residue SR A 103
4	AC4	SOFTWARE	C A:5 , HOH A:216 , HOH B:201	binding site for residue SR A 104
5	AC5	SOFTWARE	HOH B:203 , HOH B:212	binding site for residue SR B 101
6	AC6	SOFTWARE	G A:6 , C A:7 , C A:8 , G A:9 , C B:2 , C B:5 , HOH B:203 , HOH B:206 , HOH B:212 , HOH B:213 , HOH B:214 , HOH B:216 , HOH B:217	binding site for Di-nucleotide G B 3 and G B 4
7	AC7	SOFTWARE	G A:4 , C A:5 , G A:6 , HOH A:205 , HOH A:216 , C B:1 , G B:4 , C B:7 , G B:10 , HOH B:205 , HOH B:207 , HOH B:210 , HOH B:211 , HOH B:213 , HOH B:220	binding site for Di-nucleotide C B 5 and G B 6
8	AC8	SOFTWARE	G A:3 , G A:4 , C A:5 , G B:6 , G B:9 , HOH B:201 , HOH B:204 , HOH B:207	binding site for Di-nucleotide C B 7 and C B 8
9	AC9	SOFTWARE	C A:1 , C A:2 , G A:3 , G A:10 , C B:1 , C B:5 , G B:6 , C B:8 , HOH B:202 , HOH B:209 , HOH B:215 , HOH B:218	binding site for Di-nucleotide G B 9 and G B 10

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:RNA  Length:10
                                         
                  5tdk A  1 CCGGCGCCGG 10
                                    10

Chain B from PDB  Type:RNA  Length:10
                                         
                  5tdk B  1 CCGGCGCCGG 10
                                    10

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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