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Title | ASSOCIATION OF FOUR TWO-K-TURN UNITS BASED ON KT-7 3BG,3NC, FORMING A SQUARE-SHAPED STRUCTURE | |
Keywords | DNA BINDING, KINK TURN, L7AE, NANO CRYSTAL PACKING, NANOTECH | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 5G4V | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | A | 19 | 412 | 0 | |
2 | RNA | B | 19 | 412 | 0 | |
3 | Protein | 50S RIBOSOMAL PROTEIN L7AE | C | 117 | 900 | 0 |
4 | Protein | 50S RIBOSOMAL PROTEIN L7AE | D | 117 | 900 | 0 |
5 | RNA | E | 19 | 412 | 0 | |
6 | RNA | F | 19 | 412 | 0 | |
7 | Protein | 50S RIBOSOMAL PROTEIN L7AE | G | 117 | 900 | 0 |
8 | Protein | 50S RIBOSOMAL PROTEIN L7AE | H | 117 | 900 | 0 |
total | 544 | 5248 | 0 |
Unit 3 | SER1 | TYR2 | VAL3 | ARG4 | PHE5 | GLU6 | VAL7 | PRO8 | GLU9 | ASP10 | MET11 | GLN12 | ASN13 | GLU14 | ALA15 | LEU16 | SER17 | LEU18 | LEU19 | GLU20 | LYS21 | VAL22 | ARG23 | GLU24 | SER25 | GLY26 | LYS27 | VAL28 | LYS29 | LYS30 | GLY31 | THR32 | ASN33 | GLU34 | THR35 | THR36 | LYS37 | ALA38 | VAL39 | GLU40 | ARG41 | GLY42 | LEU43 | ALA44 | LYS45 | LEU46 | VAL47 | TYR48 | ILE49 | ALA50 | GLU51 | ASP52 | VAL53 | ASP54 | PRO55 | PRO56 | GLU57 | ILE58 | VAL59 | ALA60 | HIS61 | LEU62 | PRO63 | LEU64 | LEU65 | CYS66 | GLU67 | GLU68 | LYS69 | ASN70 | VAL71 | PRO72 | TYR73 | ILE74 | TYR75 | VAL76 | LYS77 | SER78 | LYS79 | ASN80 | ASP81 | LEU82 | GLY83 | ARG84 | ALA85 | VAL86 | GLY87 | ILE88 | GLU89 | VAL90 | PRO91 | CYS92 | ALA93 | SER94 | ALA95 | ALA96 | ILE97 | ILE98 | ASN99 | GLU100 | GLY101 | GLU102 | LEU103 | ARG104 | LYS105 | GLU106 | LEU107 | GLY108 | SER109 | LEU110 | VAL111 | GLU112 | LYS113 | ILE114 | LYS115 | GLY116 | LEU117 |
Unit 4 | SER1 | TYR2 | VAL3 | ARG4 | PHE5 | GLU6 | VAL7 | PRO8 | GLU9 | ASP10 | MET11 | GLN12 | ASN13 | GLU14 | ALA15 | LEU16 | SER17 | LEU18 | LEU19 | GLU20 | LYS21 | VAL22 | ARG23 | GLU24 | SER25 | GLY26 | LYS27 | VAL28 | LYS29 | LYS30 | GLY31 | THR32 | ASN33 | GLU34 | THR35 | THR36 | LYS37 | ALA38 | VAL39 | GLU40 | ARG41 | GLY42 | LEU43 | ALA44 | LYS45 | LEU46 | VAL47 | TYR48 | ILE49 | ALA50 | GLU51 | ASP52 | VAL53 | ASP54 | PRO55 | PRO56 | GLU57 | ILE58 | VAL59 | ALA60 | HIS61 | LEU62 | PRO63 | LEU64 | LEU65 | CYS66 | GLU67 | GLU68 | LYS69 | ASN70 | VAL71 | PRO72 | TYR73 | ILE74 | TYR75 | VAL76 | LYS77 | SER78 | LYS79 | ASN80 | ASP81 | LEU82 | GLY83 | ARG84 | ALA85 | VAL86 | GLY87 | ILE88 | GLU89 | VAL90 | PRO91 | CYS92 | ALA93 | SER94 | ALA95 | ALA96 | ILE97 | ILE98 | ASN99 | GLU100 | GLY101 | GLU102 | LEU103 | ARG104 | LYS105 | GLU106 | LEU107 | GLY108 | SER109 | LEU110 | VAL111 | GLU112 | LYS113 | ILE114 | LYS115 | GLY116 | LEU117 |
Unit 7 | SER1 | TYR2 | VAL3 | ARG4 | PHE5 | GLU6 | VAL7 | PRO8 | GLU9 | ASP10 | MET11 | GLN12 | ASN13 | GLU14 | ALA15 | LEU16 | SER17 | LEU18 | LEU19 | GLU20 | LYS21 | VAL22 | ARG23 | GLU24 | SER25 | GLY26 | LYS27 | VAL28 | LYS29 | LYS30 | GLY31 | THR32 | ASN33 | GLU34 | THR35 | THR36 | LYS37 | ALA38 | VAL39 | GLU40 | ARG41 | GLY42 | LEU43 | ALA44 | LYS45 | LEU46 | VAL47 | TYR48 | ILE49 | ALA50 | GLU51 | ASP52 | VAL53 | ASP54 | PRO55 | PRO56 | GLU57 | ILE58 | VAL59 | ALA60 | HIS61 | LEU62 | PRO63 | LEU64 | LEU65 | CYS66 | GLU67 | GLU68 | LYS69 | ASN70 | VAL71 | PRO72 | TYR73 | ILE74 | TYR75 | VAL76 | LYS77 | SER78 | LYS79 | ASN80 | ASP81 | LEU82 | GLY83 | ARG84 | ALA85 | VAL86 | GLY87 | ILE88 | GLU89 | VAL90 | PRO91 | CYS92 | ALA93 | SER94 | ALA95 | ALA96 | ILE97 | ILE98 | ASN99 | GLU100 | GLY101 | GLU102 | LEU103 | ARG104 | LYS105 | GLU106 | LEU107 | GLY108 | SER109 | LEU110 | VAL111 | GLU112 | LYS113 | ILE114 | LYS115 | GLY116 | LEU117 |
Unit 8 | SER1 | TYR2 | VAL3 | ARG4 | PHE5 | GLU6 | VAL7 | PRO8 | GLU9 | ASP10 | MET11 | GLN12 | ASN13 | GLU14 | ALA15 | LEU16 | SER17 | LEU18 | LEU19 | GLU20 | LYS21 | VAL22 | ARG23 | GLU24 | SER25 | GLY26 | LYS27 | VAL28 | LYS29 | LYS30 | GLY31 | THR32 | ASN33 | GLU34 | THR35 | THR36 | LYS37 | ALA38 | VAL39 | GLU40 | ARG41 | GLY42 | LEU43 | ALA44 | LYS45 | LEU46 | VAL47 | TYR48 | ILE49 | ALA50 | GLU51 | ASP52 | VAL53 | ASP54 | PRO55 | PRO56 | GLU57 | ILE58 | VAL59 | ALA60 | HIS61 | LEU62 | PRO63 | LEU64 | LEU65 | CYS66 | GLU67 | GLU68 | LYS69 | ASN70 | VAL71 | PRO72 | TYR73 | ILE74 | TYR75 | VAL76 | LYS77 | SER78 | LYS79 | ASN80 | ASP81 | LEU82 | GLY83 | ARG84 | ALA85 | VAL86 | GLY87 | ILE88 | GLU89 | VAL90 | PRO91 | CYS92 | ALA93 | SER94 | ALA95 | ALA96 | ILE97 | ILE98 | ASN99 | GLU100 | GLY101 | GLU102 | LEU103 | ARG104 | LYS105 | GLU106 | LEU107 | GLY108 | SER109 | LEU110 | VAL111 | GLU112 | LYS113 | ILE114 | LYS115 | GLY116 | LEU117 |
Unit 1 | G1 | G2 | C3 | G4 | A5 | A6 | G7 | A8 | G9 | C10 | C11 | G12 | G13 | C14 | G15 | A16 | G17 | C18 | C19 |
Unit 2 | G1 | G2 | C3 | G4 | A5 | A6 | G7 | A8 | G9 | C10 | C11 | G12 | G13 | C14 | G15 | A16 | G17 | C18 | C19 |
Unit 5 | G1 | G2 | C3 | G4 | A5 | A6 | G7 | A8 | G9 | C10 | C11 | G12 | G13 | C14 | G15 | A16 | G17 | C18 | C19 |
Unit 6 | G1 | G2 | C3 | G4 | A5 | A6 | G7 | A8 | G9 | C10 | C11 | G12 | G13 | C14 | G15 | A16 | G17 | C18 | C19 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
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Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |