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Title | STRUCTURE OF THE STANDARD KINK TURN HMKT-7 AS STEM LOOP IN P212121 SPACE GROUP | |
Keywords | RNA, KINK TURN, RNA MOTIF | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 5FJ1 | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | A | 24 | 523 | 0 | |
2 | RNA | B | 24 | 523 | 0 | |
3 | RNA | C | 24 | 523 | 0 | |
4 | RNA | D | 24 | 523 | 0 | |
5 | RNA | E | 24 | 523 | 0 | |
6 | RNA | F | 24 | 523 | 0 | |
7 | RNA | G | 24 | 523 | 0 | |
8 | RNA | H | 24 | 523 | 0 | |
9 | Ligand | HMKT-7 | A | 6 | 0 | 6 |
10 | Ligand | HMKT-7 | B | 5 | 0 | 5 |
11 | Ligand | HMKT-7 | C | 3 | 0 | 3 |
12 | Ligand | HMKT-7 | D | 1 | 0 | 1 |
13 | Ligand | HMKT-7 | E | 4 | 0 | 4 |
14 | Ligand | HMKT-7 | F | 4 | 0 | 4 |
15 | Ligand | HMKT-7 | G | 1 | 0 | 1 |
16 | Water | 14 | 0 | 16 | ||
total | 230 | 4184 | 40 |
Unit 1 | U1 | G2 | G3 | G4 | G5 | A6 | G7 | C8 | C9 | G10 | A11 | A12 | A13 | G14 | G15 | C16 | G17 | A18 | A19 | G20 | A21 | A22 | C23 | C24 |
Unit 2 | U1 | G2 | G3 | G4 | G5 | A6 | G7 | C8 | C9 | G10 | A11 | A12 | A13 | G14 | G15 | C16 | G17 | A18 | A19 | G20 | A21 | A22 | C23 | C24 |
Unit 3 | U1 | G2 | G3 | G4 | G5 | A6 | G7 | C8 | C9 | G10 | A11 | A12 | A13 | G14 | G15 | C16 | G17 | A18 | A19 | G20 | A21 | A22 | C23 | C24 |
Unit 4 | U1 | G2 | G3 | G4 | G5 | A6 | G7 | C8 | C9 | G10 | A11 | A12 | A13 | G14 | G15 | C16 | G17 | A18 | A19 | G20 | A21 | A22 | C23 | C24 |
Unit 5 | U1 | G2 | G3 | G4 | G5 | A6 | G7 | C8 | C9 | G10 | A11 | A12 | A13 | G14 | G15 | C16 | G17 | A18 | A19 | G20 | A21 | A22 | C23 | C24 |
Unit 6 | U1 | G2 | G3 | G4 | G5 | A6 | G7 | C8 | C9 | G10 | A11 | A12 | A13 | G14 | G15 | C16 | G17 | A18 | A19 | G20 | A21 | A22 | C23 | C24 |
Unit 7 | U1 | G2 | G3 | G4 | G5 | A6 | G7 | C8 | C9 | G10 | A11 | A12 | A13 | G14 | G15 | C16 | G17 | A18 | A19 | G20 | A21 | A22 | C23 | C24 |
Unit 8 | U1 | G2 | G3 | G4 | G5 | A6 | G7 | C8 | C9 | G10 | A11 | A12 | A13 | G14 | G15 | C16 | G17 | A18 | A19 | G20 | A21 | A22 | C23 | C24 |
Unit 9 | MG1025 | MG1026 | MG1027 | MG1028 | NA1029 | NA1030 |
Unit 10 | MG1025 | MG1026 | MG1027 | MG1028 | MG1029 | |
Unit 11 | MG1025 | MG1026 | MG1027 | |||
Unit 12 | MG1025 | |||||
Unit 13 | MG1025 | MG1026 | MG1027 | MG1028 | ||
Unit 14 | MG1025 | MG1026 | MG1027 | NA1028 | ||
Unit 15 | MG1025 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Go to | [Image Library Home] [Helix Analysis Home] [Image Library Entry] [Helix Analysis Entry] |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |