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Sequence, Chains, Units

Title TRNA PROCESSING ENZYME COMPLEX 1
Keywords TERMINAL NUCLEOTIDE TRANSFERASE, TRANSFERASE-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3WFQ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 73 1545 0
2  RNA    B 73 1545 0
3  RNA    C 73 1545 0
4  RNA    D 73 1545 0
5  Protein   POLY A POLYMERASE  E 439 3489 0
6  Protein   POLY A POLYMERASE  F 436 3475 0
7  Protein   POLY A POLYMERASE  G 439 3491 0
8  Protein   POLY A POLYMERASE  H 441 3503 0
total       2047 20138 0
Proteins
Unit 5   UNK5 UNK6 UNK7 GLY16 LEU17 ASN18 PHE19 TYR20 LEU21 SER22 TYR23 PHE24 ASP25 ASP26 VAL27 ALA28 LYS29 VAL30 LEU31 PRO32 ARG33 GLU34 HIS35 TYR36 CYS37 PHE38 ILE39 VAL40 GLY41 GLY42 TRP43 VAL44 ARG45 ASP46 ARG47 ILE48 LEU49 GLY50 GLU51 PRO52 VAL53 GLY54 TYR55 ASN56 ILE57 ASP58 VAL59 ASP60 PHE61 LEU62 THR63 THR64 ALA65 ASP66 PRO67 VAL68 GLU69 LEU70 ALA71 LYS72 ASN73 PHE74 ALA75 LYS76 ARG77 ILE78 GLY79 GLY80 HIS81 PHE82 PHE83 VAL84 PHE85 GLU86 PRO95 THR96 ILE97 ALA98 SER99 VAL100 VAL101 LEU102 HIS103 LEU104 PRO105 PRO106 TYR107 ARG108 TYR109 ARG110 PHE111 ASP112 PHE113 SER114 PRO115 LEU116 LYS117 GLY118 LYS119 ASP120 LEU121 GLU122 LYS123 ALA124 LEU125 ILE126 GLU127 ASP128 LEU129 LYS130 GLU131 ARG132 ASP133 PHE134 THR135 ALA136 ASN137 ALA138 ILE139 ALA140 VAL141 ASN142 LEU143 ASP144 ASP145 VAL146 LEU147 THR154 ILE155 VAL156 TYR157 ASP158 PRO159 THR160 GLY161 GLY162 ILE163 LYS164 ASP165 LEU166 GLU167 GLN168 GLY169 LEU170 LEU171 ARG172 PRO173 VAL174 SER175 ILE176 GLU177 ASN178 LEU179 LYS180 ARG181 ASP182 PRO183 VAL184 ARG185 VAL186 LEU187 ARG188 GLY189 PHE190 ARG191 ILE192 ALA193 ILE194 GLU195 LYS196 ASN197 LEU198 GLN199 LEU200 THR201 GLU202 ASP203 PHE204 TYR205 GLU206 PHE207 VAL208 LYS209 GLU210 ASP211 PRO212 ARG213 ILE214 VAL215 LEU216 LYS217 SER218 ALA219 VAL220 GLU221 ARG222 ILE223 THR224 HIS225 GLU226 LEU227 PHE228 LYS229 ILE230 MET231 LYS232 GLU233 LYS234 THR235 ALA236 HIS237 LYS238 VAL239 ILE240 ARG241 GLU242 LEU243 TYR244 GLU245 TYR246 GLY247 VAL248 LEU249 GLU250 ALA251 ILE252 ILE253 PRO254 GLU255 ILE256 GLY257 ARG258 LEU259 ARG260 GLU261 VAL262 LYS263 ASP264 PRO272 LEU273 ASP274 GLU275 HIS276 THR277 LEU278 LYS279 THR280 LEU281 GLU282 TYR283 LEU284 GLU285 GLN286 VAL287 ILE288 GLU289 ASP290 ARG291 ALA292 LYS293 TYR294 LEU295 SER296 ALA297 GLU298 LEU299 LEU300 GLU301 ASN302 PHE303 GLY304 LYS305 LYS306 ARG307 VAL308 LEU309 GLY310 GLU311 PHE312 THR313 ASP314 VAL315 GLU316 LEU317 LEU318 LYS319 TRP320 GLY321 ALA322 LEU323 PHE324 HIS325 ASP326 ILE327 GLY328 LYS329 PRO330 GLN331 THR332 PHE333 ALA334 PHE342 TYR343 GLU344 HIS345 ASP346 LYS347 VAL348 GLY349 ALA350 GLN351 ILE352 VAL353 ARG354 GLU355 ILE356 GLY357 GLU358 ARG359 LEU360 ARG361 TRP362 GLY363 ASP364 GLU365 ALA366 THR367 GLU368 PHE369 VAL370 ALA371 LYS372 LEU373 VAL374 ARG375 HIS376 HIS377 LEU378 ARG379 PRO380 PHE381 PHE382 LEU383 ARG384 GLU385 ALA386 PHE387 LYS388 LYS389 GLY390 GLU391 LEU392 LYS393 ARG394 ARG395 GLY396 MET397 ALA398 ASN399 PHE400 TRP401 ARG402 GLU403 CYS404 GLY405 ASP406 ILE407 ALA408 PRO409 HIS410 LEU411 PHE412 LEU413 LEU414 SER415 ILE416 ALA417 ASP418 ALA419 MET420 ALA421 SER422 GLY423 ASP424 GLU425 GLU426 GLU427 ASP428 ILE429 LYS430 ALA431 LEU432 MET433 GLU434 THR435 ILE436 ALA437 GLU438 LEU439 GLU440 SER441 PHE442 ASN443 ARG444 ASN445 GLU446 MET447 LYS448 UNK472 UNK473 UNK474 UNK475 UNK476 UNK477 UNK478 UNK479 UNK480 UNK481 UNK482 UNK483 UNK484 UNK485 UNK486 UNK487 UNK488 UNK491 UNK492 UNK493 UNK494 UNK495 UNK496 UNK497 UNK498 UNK499 UNK500 UNK501 UNK502 UNK503 UNK504
Unit 6   UNK5 UNK6 UNK7 LEU17 ASN18 PHE19 TYR20 LEU21 SER22 TYR23 PHE24 ASP25 ASP26 VAL27 ALA28 LYS29 VAL30 LEU31 PRO32 ARG33 GLU34 HIS35 TYR36 CYS37 PHE38 ILE39 VAL40 GLY41 GLY42 TRP43 VAL44 ARG45 ASP46 ARG47 ILE48 LEU49 GLY50 GLU51 PRO52 VAL53 GLY54 TYR55 ASN56 ILE57 ASP58 VAL59 ASP60 PHE61 LEU62 THR63 THR64 ALA65 ASP66 PRO67 VAL68 GLU69 LEU70 ALA71 LYS72 ASN73 PHE74 ALA75 LYS76 ARG77 ILE78 GLY79 GLY80 HIS81 PHE82 PHE83 VAL84 PHE85 GLU86 PRO95 THR96 ILE97 ALA98 SER99 VAL100 VAL101 LEU102 HIS103 LEU104 PRO105 PRO106 TYR107 ARG108 TYR109 ARG110 PHE111 ASP112 PHE113 SER114 PRO115 LEU116 LYS117 GLY118 LYS119 ASP120 LEU121 GLU122 LYS123 ALA124 LEU125 ILE126 GLU127 ASP128 LEU129 LYS130 GLU131 ARG132 ASP133 PHE134 THR135 ALA136 ASN137 ALA138 ILE139 ALA140 VAL141 ASN142 LEU143 ASP144 ASP145 VAL146 LEU147 THR154 ILE155 VAL156 TYR157 ASP158 PRO159 THR160 GLY161 GLY162 ILE163 LYS164 ASP165 LEU166 GLU167 GLN168 GLY169 LEU170 LEU171 ARG172 PRO173 VAL174 SER175 ILE176 GLU177 ASN178 LEU179 LYS180 ARG181 ASP182 PRO183 VAL184 ARG185 VAL186 LEU187 ARG188 GLY189 PHE190 ARG191 ILE192 ALA193 ILE194 GLU195 LYS196 ASN197 LEU198 GLN199 LEU200 THR201 GLU202 ASP203 PHE204 TYR205 GLU206 PHE207 VAL208 LYS209 GLU210 ASP211 PRO212 ARG213 ILE214 VAL215 LEU216 LYS217 SER218 ALA219 VAL220 GLU221 ARG222 ILE223 THR224 HIS225 GLU226 LEU227 PHE228 LYS229 ILE230 MET231 LYS232 GLU233 LYS234 THR235 ALA236 HIS237 LYS238 VAL239 ILE240 ARG241 GLU242 LEU243 TYR244 GLU245 TYR246 GLY247 VAL248 LEU249 GLU250 ALA251 ILE252 ILE253 PRO254 GLU255 ILE256 GLY257 ARG258 LEU259 ARG260 GLU261 VAL262 LYS263 ASP264 PRO272 LEU273 ASP274 GLU275 HIS276 THR277 LEU278 LYS279 THR280 LEU281 GLU282 TYR283 LEU284 GLU285 GLN286 VAL287 ILE288 GLU289 ASP290 ARG291 ALA292 LYS293 TYR294 LEU295 SER296 ALA297 GLU298 LEU299 LEU300 GLU301 ASN302 PHE303 GLY304 LYS305 LYS306 ARG307 VAL308 LEU309 GLY310 GLU311 PHE312 THR313 ASP314 VAL315 GLU316 LEU317 LEU318 LYS319 TRP320 GLY321 ALA322 LEU323 PHE324 HIS325 ASP326 ILE327 GLY328 LYS329 PRO330 GLN331 THR332 PHE333 ALA334 PHE342 TYR343 GLU344 HIS345 ASP346 LYS347 VAL348 GLY349 ALA350 GLN351 ILE352 VAL353 ARG354 GLU355 ILE356 GLY357 GLU358 ARG359 LEU360 ARG361 TRP362 GLY363 ASP364 GLU365 ALA366 THR367 GLU368 PHE369 VAL370 ALA371 LYS372 LEU373 VAL374 ARG375 HIS376 HIS377 LEU378 ARG379 PRO380 PHE381 PHE382 LEU383 ARG384 GLU385 ALA386 PHE387 LYS388 LYS389 GLY390 GLU391 LEU392 LYS393 ARG394 ARG395 GLY396 MET397 ALA398 ASN399 PHE400 TRP401 ARG402 GLU403 CYS404 GLY405 ASP406 ILE407 ALA408 PRO409 HIS410 LEU411 PHE412 LEU413 LEU414 SER415 ILE416 ALA417 ASP418 ALA419 MET420 ALA421 SER422 GLY423 ASP424 GLU425 GLU426 GLU427 ASP428 ILE429 LYS430 ALA431 LEU432 MET433 GLU434 THR435 ILE436 ALA437 GLU438 LEU439 GLU440 SER441 PHE442 ASN443 ARG444 ASN445 GLU446 MET447 LYS448 UNK474 UNK475 UNK476 UNK477 UNK478 UNK479 UNK480 UNK481 UNK482 UNK483 UNK484 UNK485 UNK486 UNK487 UNK488 UNK491 UNK492 UNK493 UNK494 UNK495 UNK496 UNK497 UNK498 UNK499 UNK500 UNK501 UNK502 UNK503 UNK504
Unit 7   UNK5 UNK6 UNK7 LEU17 ASN18 PHE19 TYR20 LEU21 SER22 TYR23 PHE24 ASP25 ASP26 VAL27 ALA28 LYS29 VAL30 LEU31 PRO32 ARG33 GLU34 HIS35 TYR36 CYS37 PHE38 ILE39 VAL40 GLY41 GLY42 TRP43 VAL44 ARG45 ASP46 ARG47 ILE48 LEU49 GLY50 GLU51 PRO52 VAL53 GLY54 TYR55 ASN56 ILE57 ASP58 VAL59 ASP60 PHE61 LEU62 THR63 THR64 ALA65 ASP66 PRO67 VAL68 GLU69 LEU70 ALA71 LYS72 ASN73 PHE74 ALA75 LYS76 ARG77 ILE78 GLY79 GLY80 HIS81 PHE82 PHE83 VAL84 PHE85 GLU86 PRO95 THR96 ILE97 ALA98 SER99 VAL100 VAL101 LEU102 HIS103 LEU104 PRO105 PRO106 TYR107 ARG108 TYR109 ARG110 PHE111 ASP112 PHE113 SER114 PRO115 LEU116 LYS117 GLY118 LYS119 ASP120 LEU121 GLU122 LYS123 ALA124 LEU125 ILE126 GLU127 ASP128 LEU129 LYS130 GLU131 ARG132 ASP133 PHE134 THR135 ALA136 ASN137 ALA138 ILE139 ALA140 VAL141 ASN142 LEU143 ASP144 ASP145 VAL146 LEU147 SER148 THR154 ILE155 VAL156 TYR157 ASP158 PRO159 THR160 GLY161 GLY162 ILE163 LYS164 ASP165 LEU166 GLU167 GLN168 GLY169 LEU170 LEU171 ARG172 PRO173 VAL174 SER175 ILE176 GLU177 ASN178 LEU179 LYS180 ARG181 ASP182 PRO183 VAL184 ARG185 VAL186 LEU187 ARG188 GLY189 PHE190 ARG191 ILE192 ALA193 ILE194 GLU195 LYS196 ASN197 LEU198 GLN199 LEU200 THR201 GLU202 ASP203 PHE204 TYR205 GLU206 PHE207 VAL208 LYS209 GLU210 ASP211 PRO212 ARG213 ILE214 VAL215 LEU216 LYS217 SER218 ALA219 VAL220 GLU221 ARG222 ILE223 THR224 HIS225 GLU226 LEU227 PHE228 LYS229 ILE230 MET231 LYS232 GLU233 LYS234 THR235 ALA236 HIS237 LYS238 VAL239 ILE240 ARG241 GLU242 LEU243 TYR244 GLU245 TYR246 GLY247 VAL248 LEU249 GLU250 ALA251 ILE252 ILE253 PRO254 GLU255 ILE256 GLY257 ARG258 LEU259 ARG260 GLU261 VAL262 LYS263 ASP264 PRO272 LEU273 ASP274 GLU275 HIS276 THR277 LEU278 LYS279 THR280 LEU281 GLU282 TYR283 LEU284 GLU285 GLN286 VAL287 ILE288 GLU289 ASP290 ARG291 ALA292 LYS293 TYR294 LEU295 SER296 ALA297 GLU298 LEU299 LEU300 GLU301 ASN302 PHE303 GLY304 LYS305 LYS306 ARG307 VAL308 LEU309 GLY310 GLU311 PHE312 THR313 ASP314 VAL315 GLU316 LEU317 LEU318 LYS319 TRP320 GLY321 ALA322 LEU323 PHE324 HIS325 ASP326 ILE327 GLY328 LYS329 PRO330 GLN331 THR332 PHE333 ALA334 PHE342 TYR343 GLU344 HIS345 ASP346 LYS347 VAL348 GLY349 ALA350 GLN351 ILE352 VAL353 ARG354 GLU355 ILE356 GLY357 GLU358 ARG359 LEU360 ARG361 TRP362 GLY363 ASP364 GLU365 ALA366 THR367 GLU368 PHE369 VAL370 ALA371 LYS372 LEU373 VAL374 ARG375 HIS376 HIS377 LEU378 ARG379 PRO380 PHE381 PHE382 LEU383 ARG384 GLU385 ALA386 PHE387 LYS388 LYS389 GLY390 GLU391 LEU392 LYS393 ARG394 ARG395 GLY396 MET397 ALA398 ASN399 PHE400 TRP401 ARG402 GLU403 CYS404 GLY405 ASP406 ILE407 ALA408 PRO409 HIS410 LEU411 PHE412 LEU413 LEU414 SER415 ILE416 ALA417 ASP418 ALA419 MET420 ALA421 SER422 GLY423 ASP424 GLU425 GLU426 GLU427 ASP428 ILE429 LYS430 ALA431 LEU432 MET433 GLU434 THR435 ILE436 ALA437 GLU438 LEU439 GLU440 SER441 PHE442 ASN443 ARG444 ASN445 GLU446 MET447 LYS448 UNK472 UNK473 UNK474 UNK475 UNK476 UNK477 UNK478 UNK479 UNK480 UNK481 UNK482 UNK483 UNK484 UNK485 UNK486 UNK487 UNK488 UNK491 UNK492 UNK493 UNK494 UNK495 UNK496 UNK497 UNK498 UNK499 UNK500 UNK501 UNK502 UNK503 UNK504
Unit 8   UNK5 UNK6 UNK7 UNK8 GLY16 LEU17 ASN18 PHE19 TYR20 LEU21 SER22 TYR23 PHE24 ASP25 ASP26 VAL27 ALA28 LYS29 VAL30 LEU31 PRO32 ARG33 GLU34 HIS35 TYR36 CYS37 PHE38 ILE39 VAL40 GLY41 GLY42 TRP43 VAL44 ARG45 ASP46 ARG47 ILE48 LEU49 GLY50 GLU51 PRO52 VAL53 GLY54 TYR55 ASN56 ILE57 ASP58 VAL59 ASP60 PHE61 LEU62 THR63 THR64 ALA65 ASP66 PRO67 VAL68 GLU69 LEU70 ALA71 LYS72 ASN73 PHE74 ALA75 LYS76 ARG77 ILE78 GLY79 GLY80 HIS81 PHE82 PHE83 VAL84 PHE85 GLU86 PRO95 THR96 ILE97 ALA98 SER99 VAL100 VAL101 LEU102 HIS103 LEU104 PRO105 PRO106 TYR107 ARG108 TYR109 ARG110 PHE111 ASP112 PHE113 SER114 PRO115 LEU116 LYS117 GLY118 LYS119 ASP120 LEU121 GLU122 LYS123 ALA124 LEU125 ILE126 GLU127 ASP128 LEU129 LYS130 GLU131 ARG132 ASP133 PHE134 THR135 ALA136 ASN137 ALA138 ILE139 ALA140 VAL141 ASN142 LEU143 ASP144 ASP145 VAL146 LEU147 GLN153 THR154 ILE155 VAL156 TYR157 ASP158 PRO159 THR160 GLY161 GLY162 ILE163 LYS164 ASP165 LEU166 GLU167 GLN168 GLY169 LEU170 LEU171 ARG172 PRO173 VAL174 SER175 ILE176 GLU177 ASN178 LEU179 LYS180 ARG181 ASP182 PRO183 VAL184 ARG185 VAL186 LEU187 ARG188 GLY189 PHE190 ARG191 ILE192 ALA193 ILE194 GLU195 LYS196 ASN197 LEU198 GLN199 LEU200 THR201 GLU202 ASP203 PHE204 TYR205 GLU206 PHE207 VAL208 LYS209 GLU210 ASP211 PRO212 ARG213 ILE214 VAL215 LEU216 LYS217 SER218 ALA219 VAL220 GLU221 ARG222 ILE223 THR224 HIS225 GLU226 LEU227 PHE228 LYS229 ILE230 MET231 LYS232 GLU233 LYS234 THR235 ALA236 HIS237 LYS238 VAL239 ILE240 ARG241 GLU242 LEU243 TYR244 GLU245 TYR246 GLY247 VAL248 LEU249 GLU250 ALA251 ILE252 ILE253 PRO254 GLU255 ILE256 GLY257 ARG258 LEU259 ARG260 GLU261 VAL262 LYS263 ASP264 PRO272 LEU273 ASP274 GLU275 HIS276 THR277 LEU278 LYS279 THR280 LEU281 GLU282 TYR283 LEU284 GLU285 GLN286 VAL287 ILE288 GLU289 ASP290 ARG291 ALA292 LYS293 TYR294 LEU295 SER296 ALA297 GLU298 LEU299 LEU300 GLU301 ASN302 PHE303 GLY304 LYS305 LYS306 ARG307 VAL308 LEU309 GLY310 GLU311 PHE312 THR313 ASP314 VAL315 GLU316 LEU317 LEU318 LYS319 TRP320 GLY321 ALA322 LEU323 PHE324 HIS325 ASP326 ILE327 GLY328 LYS329 PRO330 GLN331 THR332 PHE333 ALA334 PHE342 TYR343 GLU344 HIS345 ASP346 LYS347 VAL348 GLY349 ALA350 GLN351 ILE352 VAL353 ARG354 GLU355 ILE356 GLY357 GLU358 ARG359 LEU360 ARG361 TRP362 GLY363 ASP364 GLU365 ALA366 THR367 GLU368 PHE369 VAL370 ALA371 LYS372 LEU373 VAL374 ARG375 HIS376 HIS377 LEU378 ARG379 PRO380 PHE381 PHE382 LEU383 ARG384 GLU385 ALA386 PHE387 LYS388 LYS389 GLY390 GLU391 LEU392 LYS393 ARG394 ARG395 GLY396 MET397 ALA398 ASN399 PHE400 TRP401 ARG402 GLU403 CYS404 GLY405 ASP406 ILE407 ALA408 PRO409 HIS410 LEU411 PHE412 LEU413 LEU414 SER415 ILE416 ALA417 ASP418 ALA419 MET420 ALA421 SER422 GLY423 ASP424 GLU425 GLU426 GLU427 ASP428 ILE429 LYS430 ALA431 LEU432 MET433 GLU434 THR435 ILE436 ALA437 GLU438 LEU439 GLU440 SER441 PHE442 ASN443 ARG444 ASN445 GLU446 MET447 LYS448 UNK471 UNK472 UNK473 UNK474 UNK475 UNK476 UNK477 UNK478 UNK479 UNK480 UNK481 UNK482 UNK483 UNK484 UNK485 UNK486 UNK487 UNK491 UNK492 UNK493 UNK494 UNK495 UNK496 UNK497 UNK498 UNK499 UNK500 UNK501 UNK502 UNK503 UNK504
Nucleic acids
Unit 1   G1 G2 C3 C4 A5 G6 G7 U8 A9 G10 C11 U12 C13 A14 G15 U16 U17 G18 G19 U20 A21 G22 A23 G24 C25 A26 C27 U28 G29 G30 A31 C32 U33 G34 A35 A36 A37 A38 U39 C40 C41 A42 G43 G44 U45 G46 U47 C48 G49 G50 C51 G52 G53 U54 U55 C56 G57 A58 U59 U60 C61 C62 G63 C64 C65 C66 C67 U68 G69 G70 C71 C72 A73
Unit 2   G1 G2 C3 C4 A5 G6 G7 U8 A9 G10 C11 U12 C13 A14 G15 U16 U17 G18 G19 U20 A21 G22 A23 G24 C25 A26 C27 U28 G29 G30 A31 C32 U33 G34 A35 A36 A37 A38 U39 C40 C41 A42 G43 G44 U45 G46 U47 C48 G49 G50 C51 G52 G53 U54 U55 C56 G57 A58 U59 U60 C61 C62 G63 C64 C65 C66 C67 U68 G69 G70 C71 C72 A73
Unit 3   G1 G2 C3 C4 A5 G6 G7 U8 A9 G10 C11 U12 C13 A14 G15 U16 U17 G18 G19 U20 A21 G22 A23 G24 C25 A26 C27 U28 G29 G30 A31 C32 U33 G34 A35 A36 A37 A38 U39 C40 C41 A42 G43 G44 U45 G46 U47 C48 G49 G50 C51 G52 G53 U54 U55 C56 G57 A58 U59 U60 C61 C62 G63 C64 C65 C66 C67 U68 G69 G70 C71 C72 A73
Unit 4   G1 G2 C3 C4 A5 G6 G7 U8 A9 G10 C11 U12 C13 A14 G15 U16 U17 G18 G19 U20 A21 G22 A23 G24 C25 A26 C27 U28 G29 G30 A31 C32 U33 G34 A35 A36 A37 A38 U39 C40 C41 A42 G43 G44 U45 G46 U47 C48 G49 G50 C51 G52 G53 U54 U55 C56 G57 A58 U59 U60 C61 C62 G63 C64 C65 C66 C67 U68 G69 G70 C71 C72 A73
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany