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Sequence, Chains, Units

Title STRUCTURE OF THE THIAMINE PYROPHOSPHATE-SPECIFIC RIBOSWITCH BOUND TO OXYTHIAMINE PYROPHOSPHATE
Keywords RNA, STRUCTURE, RIBOSWITCH, THIAMINE PYROPHOSPHATE, OXYTHIAMINE PYROPHOSPHATE, ANTIBIOTIC, DRUGS, COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3D2X     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 77 1656 0
2  RNA    B 77 1656 0
3  Ligand   TPP-SPECIFIC RIBOSWITCH  A 8 0 33
4  Ligand   TPP-SPECIFIC RIBOSWITCH  B 7 0 32
5 Water     126 0 126
total       295 3312 191
Nucleic acids
Unit 1   G1 G2 G3 A4 C5 C6 A7 G8 G9 G10 G11 U12 G13 C14 U15 U16 G17 U18 U19 C20 A21 C22 A23 G24 G25 C26 U27 G28 A29 G30 A31 A32 A33 G34 U35 C36 C37 C38 U39 U40 U41 G42 A43 A44 C45 C46 U47 G48 A49 A50 C51 A52 G53 G54 G55 U56 A57 A58 U59 G60 C61 C62 U63 G64 C65 G66 C67 A68 G69 G70 G71 A72 G73 U74 G75 U76 C77
Unit 2   G1 G2 G3 A4 C5 C6 A7 G8 G9 G10 G11 U12 G13 C14 U15 U16 G17 U18 U19 C20 A21 C22 A23 G24 G25 C26 U27 G28 A29 G30 A31 A32 A33 G34 U35 C36 C37 C38 U39 U40 U41 G42 A43 A44 C45 C46 U47 G48 A49 A50 C51 A52 G53 G54 G55 U56 A57 A58 U59 G60 C61 C62 U63 G64 C65 G66 C67 A68 G69 G70 G71 A72 G73 U74 G75 U76 C77
Ligands
Unit 3   MG78 MG79 MG80 MG81 MG82 MG83 MG84 D2X85
Unit 4   MG78 MG79 MG80 MG81 MG82 MG83 D2X84
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany