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Title | GLUTAMYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS IN COMPLEX WITH TRNA(GLU) AND AN ENZYME INHIBITOR, GLU-AMS | |
Keywords | LIGASE, RNA, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, LIGASE/RNA COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 2CV2 | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | C | 75 | 1597 | 0 | |
2 | RNA | D | 75 | 1597 | 0 | |
3 | Protein | GLUTAMYL-TRNA SYNTHETASE | A | 468 | 3814 | 0 |
4 | Protein | GLUTAMYL-TRNA SYNTHETASE | B | 468 | 3814 | 0 |
5 | Ligand | TRNA | C | 1 | 0 | 1 |
6 | Ligand | TRNA | D | 1 | 0 | 1 |
7 | Ligand | GLUTAMYL-TRNA SYNTHETASE | A | 2 | 0 | 33 |
8 | Ligand | GLUTAMYL-TRNA SYNTHETASE | B | 2 | 0 | 33 |
9 | Water | 325 | 0 | 325 | ||
total | 1417 | 10822 | 393 |
Unit 3 | MET1 | VAL2 | VAL3 | THR4 | ARG5 | ILE6 | ALA7 | PRO8 | SER9 | PRO10 | THR11 | GLY12 | ASP13 | PRO14 | HIS15 | VAL16 | GLY17 | THR18 | ALA19 | TYR20 | ILE21 | ALA22 | LEU23 | PHE24 | ASN25 | TYR26 | ALA27 | TRP28 | ALA29 | ARG30 | ARG31 | ASN32 | GLY33 | GLY34 | ARG35 | PHE36 | ILE37 | VAL38 | ARG39 | ILE40 | GLU41 | ASP42 | THR43 | ASP44 | ARG45 | ALA46 | ARG47 | TYR48 | VAL49 | PRO50 | GLY51 | ALA52 | GLU53 | GLU54 | ARG55 | ILE56 | LEU57 | ALA58 | ALA59 | LEU60 | LYS61 | TRP62 | LEU63 | GLY64 | LEU65 | SER66 | TYR67 | ASP68 | GLU69 | GLY70 | PRO71 | ASP72 | VAL73 | GLY74 | GLY75 | PRO76 | HIS77 | GLY78 | PRO79 | TYR80 | ARG81 | GLN82 | SER83 | GLU84 | ARG85 | LEU86 | PRO87 | LEU88 | TYR89 | GLN90 | LYS91 | TYR92 | ALA93 | GLU94 | GLU95 | LEU96 | LEU97 | LYS98 | ARG99 | GLY100 | TRP101 | ALA102 | TYR103 | ARG104 | ALA105 | PHE106 | GLU107 | THR108 | PRO109 | GLU110 | GLU111 | LEU112 | GLU113 | GLN114 | ILE115 | ARG116 | LYS117 | GLU118 | LYS119 | GLY120 | GLY121 | TYR122 | ASP123 | GLY124 | ARG125 | ALA126 | ARG127 | ASN128 | ILE129 | PRO130 | PRO131 | GLU132 | GLU133 | ALA134 | GLU135 | GLU136 | ARG137 | ALA138 | ARG139 | ARG140 | GLY141 | GLU142 | PRO143 | HIS144 | VAL145 | ILE146 | ARG147 | LEU148 | LYS149 | VAL150 | PRO151 | ARG152 | PRO153 | GLY154 | THR155 | THR156 | GLU157 | VAL158 | LYS159 | ASP160 | GLU161 | LEU162 | ARG163 | GLY164 | VAL165 | VAL166 | VAL167 | TYR168 | ASP169 | ASN170 | GLN171 | GLU172 | ILE173 | PRO174 | ASP175 | VAL176 | VAL177 | LEU178 | LEU179 | LYS180 | SER181 | ASP182 | GLY183 | TYR184 | PRO185 | THR186 | TYR187 | HIS188 | LEU189 | ALA190 | ASN191 | VAL192 | VAL193 | ASP194 | ASP195 | HIS196 | LEU197 | MET198 | GLY199 | VAL200 | THR201 | ASP202 | VAL203 | ILE204 | ARG205 | ALA206 | GLU207 | GLU208 | TRP209 | LEU210 | VAL211 | SER212 | THR213 | PRO214 | ILE215 | HIS216 | VAL217 | LEU218 | LEU219 | TYR220 | ARG221 | ALA222 | PHE223 | GLY224 | TRP225 | GLU226 | ALA227 | PRO228 | ARG229 | PHE230 | TYR231 | HIS232 | MET233 | PRO234 | LEU235 | LEU236 | ARG237 | ASN238 | PRO239 | ASP240 | LYS241 | THR242 | LYS243 | ILE244 | SER245 | LYS246 | ARG247 | LYS248 | SER249 | HIS250 | THR251 | SER252 | LEU253 | ASP254 | TRP255 | TYR256 | LYS257 | ALA258 | GLU259 | GLY260 | PHE261 | LEU262 | PRO263 | GLU264 | ALA265 | LEU266 | ARG267 | ASN268 | TYR269 | LEU270 | CYS271 | LEU272 | MET273 | GLY274 | PHE275 | SER276 | MET277 | PRO278 | ASP279 | GLY280 | ARG281 | GLU282 | ILE283 | PHE284 | THR285 | LEU286 | GLU287 | GLU288 | PHE289 | ILE290 | GLN291 | ALA292 | PHE293 | THR294 | TRP295 | GLU296 | ARG297 | VAL298 | SER299 | LEU300 | GLY301 | GLY302 | PRO303 | VAL304 | PHE305 | ASP306 | LEU307 | GLU308 | LYS309 | LEU310 | ARG311 | TRP312 | MET313 | ASN314 | GLY315 | LYS316 | TYR317 | ILE318 | ARG319 | GLU320 | VAL321 | LEU322 | SER323 | LEU324 | GLU325 | GLU326 | VAL327 | ALA328 | GLU329 | ARG330 | VAL331 | LYS332 | PRO333 | PHE334 | LEU335 | ARG336 | GLU337 | ALA338 | GLY339 | LEU340 | SER341 | TRP342 | GLU343 | SER344 | GLU345 | ALA346 | TYR347 | LEU348 | ARG349 | ARG350 | ALA351 | VAL352 | GLU353 | LEU354 | MET355 | ARG356 | PRO357 | ARG358 | PHE359 | ASP360 | THR361 | LEU362 | LYS363 | GLU364 | PHE365 | PRO366 | GLU367 | LYS368 | ALA369 | ARG370 | TYR371 | LEU372 | PHE373 | THR374 | GLU375 | ASP376 | TYR377 | PRO378 | VAL379 | SER380 | GLU381 | LYS382 | ALA383 | GLN384 | ARG385 | LYS386 | LEU387 | GLU388 | GLU389 | GLY390 | LEU391 | PRO392 | LEU393 | LEU394 | LYS395 | GLU396 | LEU397 | TYR398 | PRO399 | ARG400 | LEU401 | ARG402 | ALA403 | GLN404 | GLU405 | GLU406 | TRP407 | THR408 | GLU409 | ALA410 | ALA411 | LEU412 | GLU413 | ALA414 | LEU415 | LEU416 | ARG417 | GLY418 | PHE419 | ALA420 | ALA421 | GLU422 | LYS423 | GLY424 | VAL425 | LYS426 | LEU427 | GLY428 | GLN429 | VAL430 | ALA431 | GLN432 | PRO433 | LEU434 | ARG435 | ALA436 | ALA437 | LEU438 | THR439 | GLY440 | SER441 | LEU442 | GLU443 | THR444 | PRO445 | GLY446 | LEU447 | PHE448 | GLU449 | ILE450 | LEU451 | ALA452 | LEU453 | LEU454 | GLY455 | LYS456 | GLU457 | ARG458 | ALA459 | LEU460 | ARG461 | ARG462 | LEU463 | GLU464 | ARG465 | ALA466 | LEU467 | ALA468 |
Unit 4 | MET1 | VAL2 | VAL3 | THR4 | ARG5 | ILE6 | ALA7 | PRO8 | SER9 | PRO10 | THR11 | GLY12 | ASP13 | PRO14 | HIS15 | VAL16 | GLY17 | THR18 | ALA19 | TYR20 | ILE21 | ALA22 | LEU23 | PHE24 | ASN25 | TYR26 | ALA27 | TRP28 | ALA29 | ARG30 | ARG31 | ASN32 | GLY33 | GLY34 | ARG35 | PHE36 | ILE37 | VAL38 | ARG39 | ILE40 | GLU41 | ASP42 | THR43 | ASP44 | ARG45 | ALA46 | ARG47 | TYR48 | VAL49 | PRO50 | GLY51 | ALA52 | GLU53 | GLU54 | ARG55 | ILE56 | LEU57 | ALA58 | ALA59 | LEU60 | LYS61 | TRP62 | LEU63 | GLY64 | LEU65 | SER66 | TYR67 | ASP68 | GLU69 | GLY70 | PRO71 | ASP72 | VAL73 | GLY74 | GLY75 | PRO76 | HIS77 | GLY78 | PRO79 | TYR80 | ARG81 | GLN82 | SER83 | GLU84 | ARG85 | LEU86 | PRO87 | LEU88 | TYR89 | GLN90 | LYS91 | TYR92 | ALA93 | GLU94 | GLU95 | LEU96 | LEU97 | LYS98 | ARG99 | GLY100 | TRP101 | ALA102 | TYR103 | ARG104 | ALA105 | PHE106 | GLU107 | THR108 | PRO109 | GLU110 | GLU111 | LEU112 | GLU113 | GLN114 | ILE115 | ARG116 | LYS117 | GLU118 | LYS119 | GLY120 | GLY121 | TYR122 | ASP123 | GLY124 | ARG125 | ALA126 | ARG127 | ASN128 | ILE129 | PRO130 | PRO131 | GLU132 | GLU133 | ALA134 | GLU135 | GLU136 | ARG137 | ALA138 | ARG139 | ARG140 | GLY141 | GLU142 | PRO143 | HIS144 | VAL145 | ILE146 | ARG147 | LEU148 | LYS149 | VAL150 | PRO151 | ARG152 | PRO153 | GLY154 | THR155 | THR156 | GLU157 | VAL158 | LYS159 | ASP160 | GLU161 | LEU162 | ARG163 | GLY164 | VAL165 | VAL166 | VAL167 | TYR168 | ASP169 | ASN170 | GLN171 | GLU172 | ILE173 | PRO174 | ASP175 | VAL176 | VAL177 | LEU178 | LEU179 | LYS180 | SER181 | ASP182 | GLY183 | TYR184 | PRO185 | THR186 | TYR187 | HIS188 | LEU189 | ALA190 | ASN191 | VAL192 | VAL193 | ASP194 | ASP195 | HIS196 | LEU197 | MET198 | GLY199 | VAL200 | THR201 | ASP202 | VAL203 | ILE204 | ARG205 | ALA206 | GLU207 | GLU208 | TRP209 | LEU210 | VAL211 | SER212 | THR213 | PRO214 | ILE215 | HIS216 | VAL217 | LEU218 | LEU219 | TYR220 | ARG221 | ALA222 | PHE223 | GLY224 | TRP225 | GLU226 | ALA227 | PRO228 | ARG229 | PHE230 | TYR231 | HIS232 | MET233 | PRO234 | LEU235 | LEU236 | ARG237 | ASN238 | PRO239 | ASP240 | LYS241 | THR242 | LYS243 | ILE244 | SER245 | LYS246 | ARG247 | LYS248 | SER249 | HIS250 | THR251 | SER252 | LEU253 | ASP254 | TRP255 | TYR256 | LYS257 | ALA258 | GLU259 | GLY260 | PHE261 | LEU262 | PRO263 | GLU264 | ALA265 | LEU266 | ARG267 | ASN268 | TYR269 | LEU270 | CYS271 | LEU272 | MET273 | GLY274 | PHE275 | SER276 | MET277 | PRO278 | ASP279 | GLY280 | ARG281 | GLU282 | ILE283 | PHE284 | THR285 | LEU286 | GLU287 | GLU288 | PHE289 | ILE290 | GLN291 | ALA292 | PHE293 | THR294 | TRP295 | GLU296 | ARG297 | VAL298 | SER299 | LEU300 | GLY301 | GLY302 | PRO303 | VAL304 | PHE305 | ASP306 | LEU307 | GLU308 | LYS309 | LEU310 | ARG311 | TRP312 | MET313 | ASN314 | GLY315 | LYS316 | TYR317 | ILE318 | ARG319 | GLU320 | VAL321 | LEU322 | SER323 | LEU324 | GLU325 | GLU326 | VAL327 | ALA328 | GLU329 | ARG330 | VAL331 | LYS332 | PRO333 | PHE334 | LEU335 | ARG336 | GLU337 | ALA338 | GLY339 | LEU340 | SER341 | TRP342 | GLU343 | SER344 | GLU345 | ALA346 | TYR347 | LEU348 | ARG349 | ARG350 | ALA351 | VAL352 | GLU353 | LEU354 | MET355 | ARG356 | PRO357 | ARG358 | PHE359 | ASP360 | THR361 | LEU362 | LYS363 | GLU364 | PHE365 | PRO366 | GLU367 | LYS368 | ALA369 | ARG370 | TYR371 | LEU372 | PHE373 | THR374 | GLU375 | ASP376 | TYR377 | PRO378 | VAL379 | SER380 | GLU381 | LYS382 | ALA383 | GLN384 | ARG385 | LYS386 | LEU387 | GLU388 | GLU389 | GLY390 | LEU391 | PRO392 | LEU393 | LEU394 | LYS395 | GLU396 | LEU397 | TYR398 | PRO399 | ARG400 | LEU401 | ARG402 | ALA403 | GLN404 | GLU405 | GLU406 | TRP407 | THR408 | GLU409 | ALA410 | ALA411 | LEU412 | GLU413 | ALA414 | LEU415 | LEU416 | ARG417 | GLY418 | PHE419 | ALA420 | ALA421 | GLU422 | LYS423 | GLY424 | VAL425 | LYS426 | LEU427 | GLY428 | GLN429 | VAL430 | ALA431 | GLN432 | PRO433 | LEU434 | ARG435 | ALA436 | ALA437 | LEU438 | THR439 | GLY440 | SER441 | LEU442 | GLU443 | THR444 | PRO445 | GLY446 | LEU447 | PHE448 | GLU449 | ILE450 | LEU451 | ALA452 | LEU453 | LEU454 | GLY455 | LYS456 | GLU457 | ARG458 | ALA459 | LEU460 | ARG461 | ARG462 | LEU463 | GLU464 | ARG465 | ALA466 | LEU467 | ALA468 |
Unit 1 | G501 | G502 | C503 | C504 | C505 | C506 | A507 | U508 | C509 | G510 | U511 | C512 | U513 | A514 | G515 | C516 | G518 | G519 | U520 | U520A | A521 | G522 | G523 | A524 | C525 | G526 | C527 | G528 | G529 | C530 | C531 | C532 | U533 | C534 | U535 | C536 | A537 | A538 | G539 | G540 | C541 | C542 | G543 | A544 | A545 | A546 | C548 | G549 | G550 | G551 | G552 | G553 | U554 | U555 | C556 | G557 | A558 | U559 | U560 | C561 | C562 | C563 | C564 | C565 | U566 | G567 | G568 | G569 | G570 | U571 | C572 | A573 | C574 | C575 | A576 |
Unit 2 | G501 | G502 | C503 | C504 | C505 | C506 | A507 | U508 | C509 | G510 | U511 | C512 | U513 | A514 | G515 | C516 | G518 | G519 | U520 | U520A | A521 | G522 | G523 | A524 | C525 | G526 | C527 | G528 | G529 | C530 | C531 | C532 | U533 | C534 | U535 | C536 | A537 | A538 | G539 | G540 | C541 | C542 | G543 | A544 | A545 | A546 | C548 | G549 | G550 | G551 | G552 | G553 | U554 | U555 | C556 | G557 | A558 | U559 | U560 | C561 | C562 | C563 | C564 | C565 | U566 | G567 | G568 | G569 | G570 | U571 | C572 | A573 | C574 | C575 | A576 |
Unit 5 | MG902 | |
Unit 6 | MG901 | |
Unit 7 | GSU601 | CL904 |
Unit 8 | GSU602 | CL903 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Go to | [Image Library Home] [Helix Analysis Home] [Image Library Entry] [Helix Analysis Entry] |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |