JenaLib Home    
[Image Library Home]     [Helix Analysis Home]     [Image Library Entry]     [Helix Analysis Entry]   

Sequence, Chains, Units

Title BUILDING A REPLISOME FROM INTERACTING PIECES: SLIDING CLAMP COMPLEXED TO A PEPTIDE FROM DNA POLYMERASE AND A POLYMERASE EDITING COMPLEX
Keywords SLIDING CLAMP, GP45, REPLISOME, ACCESSORY PROTEIN, POLYMERASE, GP43, REPLICATION
Experiment theoretical model
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1QE4     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PROTEIN (DNA POLYMERASE)  F 903 903 0
2  Protein   PROTEIN (SLIDING CLAMP)  A 228 228 0
3  Protein   PROTEIN (SLIDING CLAMP)  B 228 228 0
4  Protein   PROTEIN (SLIDING CLAMP)  C 228 228 0
5  Protein   PROTEIN (DNA POLYMERASE)  P 9 9 0
6  DNA    E 22 452 0
7  DNA    D 23 466 0
total       1641 2514 0
Proteins
Unit 1   MET1 LYS2 GLU3 PHE4 TYR5 LEU6 THR7 VAL8 GLU9 GLN10 ILE11 GLY12 ASP13 SER14 ILE15 PHE16 GLU17 ARG18 TYR19 ILE20 ASP21 SER22 ASN23 GLY24 ARG25 GLU26 ARG27 THR28 ARG29 GLU30 VAL31 GLU32 TYR33 LYS34 PRO35 SER36 LEU37 PHE38 ALA39 HIS40 CYS41 PRO42 GLU43 SER44 GLN45 ALA46 THR47 LYS48 TYR49 PHE50 ASP51 ILE52 TYR53 GLY54 LYS55 PRO56 CYS57 THR58 ARG59 LYS60 LEU61 PHE62 ALA63 ASN64 MET65 ARG66 ASP67 ALA68 SER69 GLN70 TRP71 ILE72 LYS73 ARG74 MET75 GLU76 ASP77 ILE78 GLY79 LEU80 GLU81 ALA82 LEU83 GLY84 MET85 ASP86 ASP87 PHE88 LYS89 LEU90 ALA91 TYR92 LEU93 SER94 ASP95 THR96 TYR97 ASN98 TYR99 GLU100 ILE101 LYS102 TYR103 ASP104 HIS105 THR106 LYS107 ILE108 ARG109 VAL110 ALA111 ASN112 PHE113 ASP114 ILE115 GLU116 VAL117 THR118 SER119 PRO120 ASP121 GLY122 PHE123 PRO124 GLU125 PRO126 SER127 GLN128 ALA129 LYS130 HIS131 PRO132 ILE133 ASP134 ALA135 ILE136 THR137 HIS138 TYR139 ASP140 SER141 ILE142 ASP143 ASP144 ARG145 PHE146 TYR147 VAL148 PHE149 ASP150 LEU151 LEU152 ASN153 SER154 PRO155 TYR156 GLY157 ASN158 VAL159 GLU160 GLU161 TRP162 SER163 ILE164 GLU165 ILE166 ALA167 ALA168 LYS169 LEU170 GLN171 GLU172 GLN173 GLY174 GLY175 ASP176 GLU177 VAL178 PRO179 SER180 GLU181 ILE182 ILE183 ASP184 LYS185 ILE186 ILE187 TYR188 MET189 PRO190 PHE191 ASP192 ASN193 GLU194 LYS195 GLU196 LEU197 LEU198 MET199 GLU200 TYR201 LEU202 ASN203 PHE204 TRP205 GLN206 GLN207 LYS208 THR209 PRO210 VAL211 ILE212 LEU213 THR214 GLY215 TRP216 ASN217 VAL218 GLU219 SER220 PHE221 ASP222 ILE223 PRO224 TYR225 VAL226 TYR227 ASN228 ARG229 ILE230 LYS231 ASN232 ILE233 PHE234 GLY235 GLU236 SER237 THR238 ALA239 LYS240 ARG241 LEU242 SER243 PRO244 HIS245 ARG246 LYS247 THR248 ARG249 VAL250 LYS251 VAL252 ILE253 GLU254 ASN255 MET256 TYR257 GLY258 SER259 ARG260 GLU261 ILE262 ILE263 THR264 LEU265 PHE266 GLY267 ILE268 SER269 VAL270 LEU271 ASP272 TYR273 ILE274 ASP275 LEU276 TYR277 LYS278 LYS279 PHE280 SER281 PHE282 THR283 ASN284 GLN285 PRO286 SER287 TYR288 SER289 LEU290 ASP291 TYR292 ILE293 SER294 GLU295 PHE296 GLU297 LEU298 ASN299 VAL300 GLY301 LYS302 LEU303 LYS304 TYR305 ASP306 GLY307 PRO308 ILE309 SER310 LYS311 LEU312 ARG313 GLU314 SER315 ASN316 HIS317 GLN318 ARG319 TYR320 ILE321 SER322 TYR323 ASN324 ILE325 ILE326 ASP327 VAL328 TYR329 ARG330 VAL331 LEU332 GLN333 ILE334 ASP335 ALA336 LYS337 ARG338 GLN339 PHE340 ILE341 ASN342 LEU343 SER344 LEU345 ASP346 MET347 GLY348 TYR349 TYR350 ALA351 LYS352 ILE353 GLN354 ILE355 GLN356 SER357 VAL358 PHE359 SER360 PRO361 ILE362 LYS363 THR364 TRP365 ASP366 ALA367 ILE368 ILE369 PHE370 ASN371 SER372 LEU373 LYS374 GLU375 GLN376 ASN377 LYS378 VAL379 ILE380 PRO381 GLN382 GLY383 ARG384 SER385 HIS386 PRO387 VAL388 GLN389 PRO390 TYR391 PRO392 GLY393 ALA394 PHE395 VAL396 LYS397 GLU398 PRO399 ILE400 PRO401 ASN402 ARG403 TYR404 LYS405 TYR406 VAL407 MET408 SER409 PHE410 ASP411 LEU412 THR413 SER414 LEU415 TYR416 PRO417 SER418 ILE419 ILE420 ARG421 GLN422 VAL423 ASN424 ILE425 SER426 PRO427 GLU428 THR429 ILE430 ALA431 GLY432 THR433 PHE434 LYS435 VAL436 ALA437 PRO438 LEU439 HIS440 ASP441 TYR442 ILE443 ASN444 ALA445 VAL446 ALA447 GLU448 ARG449 PRO450 SER451 ASP452 VAL453 TYR454 SER455 CYS456 SER457 PRO458 ASN459 GLY460 MET461 MET462 TYR463 TYR464 LYS465 ASP466 ARG467 ASP468 GLY469 VAL470 VAL471 PRO472 THR473 GLU474 ILE475 THR476 LYS477 VAL478 PHE479 ASN480 GLN481 ARG482 LYS483 GLU484 HIS485 LYS486 GLY487 TYR488 MET489 LEU490 ALA491 ALA492 GLN493 ARG494 ASN495 GLY496 GLU497 ILE498 ILE499 LYS500 GLU501 ALA502 LEU503 HIS504 ASN505 PRO506 ASN507 LEU508 SER509 VAL510 ASP511 GLU512 PRO513 LEU514 ASP515 VAL516 ASP517 TYR518 ARG519 PHE520 ASP521 PHE522 SER523 ASP524 GLU525 ILE526 LYS527 GLU528 LYS529 ILE530 LYS531 LYS532 LEU533 SER534 ALA535 LYS536 SER537 LEU538 ASN539 GLU540 MET541 LEU542 PHE543 ARG544 ALA545 GLN546 ARG547 THR548 GLU549 VAL550 ALA551 GLY552 MET553 THR554 ALA555 GLN556 ILE557 ASN558 ARG559 LYS560 LEU561 LEU562 ILE563 ASN564 SER565 LEU566 TYR567 GLY568 ALA569 LEU570 GLY571 ASN572 VAL573 TRP574 PHE575 ARG576 TYR577 TYR578 ASP579 LEU580 ARG581 ASN582 ALA583 THR584 ALA585 ILE586 THR587 THR588 PHE589 GLY590 GLN591 MET592 ALA593 LEU594 GLN595 TRP596 ILE597 GLU598 ARG599 LYS600 VAL601 ASN602 GLU603 TYR604 LEU605 ASN606 GLU607 VAL608 CYS609 GLY610 THR611 GLU612 GLY613 GLU614 ALA615 PHE616 VAL617 LEU618 TYR619 GLY620 ASP621 THR622 ASP623 SER624 ILE625 TYR626 VAL627 SER628 ALA629 ASP630 LYS631 ILE632 ILE633 ASP634 LYS635 VAL636 GLY637 GLU638 SER639 LYS640 PHE641 ARG642 ASP643 THR644 ASN645 HIS646 TRP647 VAL648 ASP649 PHE650 LEU651 ASP652 LYS653 PHE654 ALA655 ARG656 GLU657 ARG658 MET659 GLU660 PRO661 ALA662 ILE663 ASP664 ARG665 GLY666 PHE667 ARG668 GLU669 MET670 CYS671 GLU672 TYR673 MET674 ASN675 ASN676 LYS677 GLN678 HIS679 LEU680 MET681 PHE682 MET683 ASP684 ARG685 GLU686 ALA687 ILE688 ALA689 GLY690 PRO691 PRO692 LEU693 GLY694 SER695 LYS696 GLY697 ILE698 GLY699 GLY700 PHE701 TRP702 THR703 GLY704 LYS705 LYS706 ARG707 TYR708 ALA709 LEU710 ASN711 VAL712 TRP713 ASP714 MET715 GLU716 GLY717 THR718 ARG719 TYR720 ALA721 GLU722 PRO723 LYS724 LEU725 LYS726 ILE727 MET728 GLY729 LEU730 GLU731 THR732 GLN733 LYS734 SER735 SER736 THR737 PRO738 LYS739 ALA740 VAL741 GLN742 LYS743 ALA744 LEU745 LYS746 GLU747 CYS748 ILE749 ARG750 ARG751 MET752 LEU753 GLN754 GLU755 GLY756 GLU757 GLU758 SER759 LEU760 GLN761 GLU762 TYR763 PHE764 LYS765 GLU766 PHE767 GLU768 LYS769 GLU770 PHE771 ARG772 GLN773 LEU774 ASN775 TYR776 ILE777 SER778 ILE779 ALA780 SER781 VAL782 SER783 SER784 ALA785 ASN786 ASN787 ILE788 ALA789 LYS790 TYR791 ASP792 VAL793 GLY794 GLY795 PHE796 PRO797 GLY798 PRO799 LYS800 CYS801 PRO802 PHE803 HIS804 ILE805 ARG806 GLY807 ILE808 LEU809 THR810 TYR811 ASN812 ARG813 ALA814 ILE815 LYS816 GLY817 ASN818 ILE819 ASP820 ALA821 PRO822 GLN823 VAL824 VAL825 GLU826 GLY827 GLU828 LYS829 VAL830 TYR831 VAL832 LEU833 PRO834 LEU835 ARG836 GLU837 GLY838 ASN839 PRO840 PHE841 GLY842 ASP843 LYS844 CYS845 ILE846 ALA847 TRP848 PRO849 SER850 GLY851 THR852 GLU853 ILE854 THR855 ASP856 LEU857 ILE858 LYS859 ASP860 ASP861 VAL862 LEU863 HIS864 TRP865 MET866 ASP867 TYR868 THR869 VAL870 LEU871 LEU872 GLU873 LYS874 THR875 PHE876 ILE877 LYS878 PRO879 LEU880 GLU881 GLY882 PHE883 THR884 SER885 ALA886 ALA887 LYS888 LEU889 ASP890 TYR891 GLU892 LYS893 LYS894 ALA895 SER896 LEU897 PHE898 ASP899 MET900 PHE901 ASP902 PHE903
Unit 2   MET1 LYS2 LEU3 SER4 LYS5 ASP6 THR7 ILE8 ALA9 ILE10 LEU11 LYS12 ASN13 PHE14 ALA15 SER16 ILE17 ASN18 SER19 GLY20 ILE21 LEU22 LEU23 SER24 GLN25 GLY26 LYS27 PHE28 ILE29 MET30 THR31 ARG32 ALA33 VAL34 ASN35 GLY36 THR37 THR38 TYR39 ALA40 GLU41 ALA42 ASN43 ILE44 SER45 ASP46 ASP47 ILE48 ASP49 PHE50 ASP51 VAL52 ALA53 LEU54 TYR55 ASP56 LEU57 ASN58 SER59 PHE60 LEU61 SER62 ILE63 LEU64 SER65 LEU66 VAL67 SER68 ASP69 ASP70 ALA71 GLU72 ILE73 SER74 MET75 HIS76 THR77 ASP78 GLY79 ASN80 ILE81 LYS82 ILE83 ALA84 ASP85 THR86 ARG87 SER88 THR89 VAL90 TYR91 TRP92 PRO93 ALA94 ALA95 ASP96 LYS97 SER98 THR99 ILE100 VAL101 PHE102 PRO103 ASN104 LYS105 PRO106 ILE107 GLN108 PHE109 PRO110 VAL111 ALA112 SER113 VAL114 ILE115 THR116 GLU117 ILE118 LYS119 ALA120 GLU121 ASP122 LEU123 GLN124 GLN125 LEU126 LEU127 ARG128 VAL129 SER130 ARG131 GLY132 LEU133 GLN134 ILE135 ASP136 THR137 ILE138 ALA139 ILE140 THR141 ASN142 LYS143 ASP144 GLY145 LYS146 ILE147 VAL148 ILE149 ASN150 GLY151 TYR152 ASN153 LYS154 VAL155 GLU156 ASP157 SER158 GLY159 LEU160 THR161 ARG162 PRO163 LYS164 TYR165 SER166 LEU167 THR168 LEU169 THR170 ASP171 TYR172 ASP173 GLY174 SER175 ASN176 ASN177 PHE178 ASN179 PHE180 VAL181 ILE182 ASN183 MET184 ASN185 ASN186 MET187 LYS188 ILE189 GLN190 PRO191 GLY192 ASN193 TYR194 LYS195 VAL196 MET197 LEU198 TRP199 GLY200 ALA201 GLY202 ASP203 LYS204 VAL205 ALA206 ALA207 LYS208 PHE209 GLU210 SER211 SER212 GLN213 VAL214 SER215 TYR216 VAL217 ILE218 ALA219 MET220 GLU221 ALA222 ASP223 SER224 THR225 HIS226 ASP227 PHE228
Unit 3   MET1 LYS2 LEU3 SER4 LYS5 ASP6 THR7 ILE8 ALA9 ILE10 LEU11 LYS12 ASN13 PHE14 ALA15 SER16 ILE17 ASN18 SER19 GLY20 ILE21 LEU22 LEU23 SER24 GLN25 GLY26 LYS27 PHE28 ILE29 MET30 THR31 ARG32 ALA33 VAL34 ASN35 GLY36 THR37 THR38 TYR39 ALA40 GLU41 ALA42 ASN43 ILE44 SER45 ASP46 ASP47 ILE48 ASP49 PHE50 ASP51 VAL52 ALA53 LEU54 TYR55 ASP56 LEU57 ASN58 SER59 PHE60 LEU61 SER62 ILE63 LEU64 SER65 LEU66 VAL67 SER68 ASP69 ASP70 ALA71 GLU72 ILE73 SER74 MET75 HIS76 THR77 ASP78 GLY79 ASN80 ILE81 LYS82 ILE83 ALA84 ASP85 THR86 ARG87 SER88 THR89 VAL90 TYR91 TRP92 PRO93 ALA94 ALA95 ASP96 LYS97 SER98 THR99 ILE100 VAL101 PHE102 PRO103 ASN104 LYS105 PRO106 ILE107 GLN108 PHE109 PRO110 VAL111 ALA112 SER113 VAL114 ILE115 THR116 GLU117 ILE118 LYS119 ALA120 GLU121 ASP122 LEU123 GLN124 GLN125 LEU126 LEU127 ARG128 VAL129 SER130 ARG131 GLY132 LEU133 GLN134 ILE135 ASP136 THR137 ILE138 ALA139 ILE140 THR141 ASN142 LYS143 ASP144 GLY145 LYS146 ILE147 VAL148 ILE149 ASN150 GLY151 TYR152 ASN153 LYS154 VAL155 GLU156 ASP157 SER158 GLY159 LEU160 THR161 ARG162 PRO163 LYS164 TYR165 SER166 LEU167 THR168 LEU169 THR170 ASP171 TYR172 ASP173 GLY174 SER175 ASN176 ASN177 PHE178 ASN179 PHE180 VAL181 ILE182 ASN183 MET184 ASN185 ASN186 MET187 LYS188 ILE189 GLN190 PRO191 GLY192 ASN193 TYR194 LYS195 VAL196 MET197 LEU198 TRP199 GLY200 ALA201 GLY202 ASP203 LYS204 VAL205 ALA206 ALA207 LYS208 PHE209 GLU210 SER211 SER212 GLN213 VAL214 SER215 TYR216 VAL217 ILE218 ALA219 MET220 GLU221 ALA222 ASP223 SER224 THR225 HIS226 ASP227 PHE228
Unit 4   MET1 LYS2 LEU3 SER4 LYS5 ASP6 THR7 ILE8 ALA9 ILE10 LEU11 LYS12 ASN13 PHE14 ALA15 SER16 ILE17 ASN18 SER19 GLY20 ILE21 LEU22 LEU23 SER24 GLN25 GLY26 LYS27 PHE28 ILE29 MET30 THR31 ARG32 ALA33 VAL34 ASN35 GLY36 THR37 THR38 TYR39 ALA40 GLU41 ALA42 ASN43 ILE44 SER45 ASP46 ASP47 ILE48 ASP49 PHE50 ASP51 VAL52 ALA53 LEU54 TYR55 ASP56 LEU57 ASN58 SER59 PHE60 LEU61 SER62 ILE63 LEU64 SER65 LEU66 VAL67 SER68 ASP69 ASP70 ALA71 GLU72 ILE73 SER74 MET75 HIS76 THR77 ASP78 GLY79 ASN80 ILE81 LYS82 ILE83 ALA84 ASP85 THR86 ARG87 SER88 THR89 VAL90 TYR91 TRP92 PRO93 ALA94 ALA95 ASP96 LYS97 SER98 THR99 ILE100 VAL101 PHE102 PRO103 ASN104 LYS105 PRO106 ILE107 GLN108 PHE109 PRO110 VAL111 ALA112 SER113 VAL114 ILE115 THR116 GLU117 ILE118 LYS119 ALA120 GLU121 ASP122 LEU123 GLN124 GLN125 LEU126 LEU127 ARG128 VAL129 SER130 ARG131 GLY132 LEU133 GLN134 ILE135 ASP136 THR137 ILE138 ALA139 ILE140 THR141 ASN142 LYS143 ASP144 GLY145 LYS146 ILE147 VAL148 ILE149 ASN150 GLY151 TYR152 ASN153 LYS154 VAL155 GLU156 ASP157 SER158 GLY159 LEU160 THR161 ARG162 PRO163 LYS164 TYR165 SER166 LEU167 THR168 LEU169 THR170 ASP171 TYR172 ASP173 GLY174 SER175 ASN176 ASN177 PHE178 ASN179 PHE180 VAL181 ILE182 ASN183 MET184 ASN185 ASN186 MET187 LYS188 ILE189 GLN190 PRO191 GLY192 ASN193 TYR194 LYS195 VAL196 MET197 LEU198 TRP199 GLY200 ALA201 GLY202 ASP203 LYS204 VAL205 ALA206 ALA207 LYS208 PHE209 GLU210 SER211 SER212 GLN213 VAL214 SER215 TYR216 VAL217 ILE218 ALA219 MET220 GLU221 ALA222 ASP223 SER224 THR225 HIS226 ASP227 PHE228
Unit 5   ALA895 SER896 LEU897 PHE898 ASP899 MET900 PHE901 ASP902 PHE903
Nucleic acids
Unit 6   G2 C3 G4 G5 A6 A7 C8 T9 A10 C11 T12 G13 A14 C15 G16 A17 C18 G19 A20 C21 G22 A23
Unit 7   G1 C2 G3 C4 C5 T6 T7 G8 A9 T10 G11 A12 C13 T14 G15 C16 T17 G18 C19 T20 G21 C22 T23
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

Go to    [Image Library Home]    [Helix Analysis Home]    [Image Library Entry]    [Helix Analysis Entry]   
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany