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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF PRFA-DNA BINARY COMPLEX
Keywords DNA COMPLEX, DNA BINDING PROTEIN-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5X6E     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   LISTERIOLYSIN POSITIVE REGULATORY FACTOR A  M 236 1920 0
2  Protein   LISTERIOLYSIN POSITIVE REGULATORY FACTOR A  N 236 1920 0
3  Other macromolecule   DNA (29-MER)  O 29 587 0
4  Other macromolecule   DNA (28-MER)  P 28 577 0
5  Protein   LISTERIOLYSIN POSITIVE REGULATORY FACTOR A  A 236 1920 0
6  Protein   LISTERIOLYSIN POSITIVE REGULATORY FACTOR A  B 236 1920 0
7  Other macromolecule   DNA (29-MER)  C 29 587 0
8  Other macromolecule   DNA (28-MER)  D 29 596 0
9  Protein   LISTERIOLYSIN POSITIVE REGULATORY FACTOR A  E 236 1920 0
10  Protein   LISTERIOLYSIN POSITIVE REGULATORY FACTOR A  F 236 1920 0
11  Other macromolecule   DNA (29-MER)  G 28 571 0
12  Other macromolecule   DNA (28-MER)  H 29 596 0
13  Ligand   LISTERIOLYSIN POSITIVE REGULATORY FACTOR A  M 1 0 20
14  Ligand   LISTERIOLYSIN POSITIVE REGULATORY FACTOR A  N 1 0 20
15  Ligand   LISTERIOLYSIN POSITIVE REGULATORY FACTOR A  A 1 0 20
16  Ligand   LISTERIOLYSIN POSITIVE REGULATORY FACTOR A  B 1 0 20
17  Ligand   LISTERIOLYSIN POSITIVE REGULATORY FACTOR A  E 1 0 20
18  Ligand   LISTERIOLYSIN POSITIVE REGULATORY FACTOR A  F 1 0 20
total       1594 15034 120

Proteins
Unit 1 ASN2 ALA3 GLN4 ALA5 GLU6 GLU7 PHE8 LYS9 LYS10 TYR11 LEU12 GLU13 THR14 ASN15 GLY16 ILE17 LYS18 PRO19 LYS20 GLN21 PHE22 HIS23 LYS24 LYS25 GLU26 LEU27 ILE28 PHE29 ASN30 GLN31 TRP32 ASP33 PRO34 GLN35 GLU36 TYR37 CYS38 ILE39 PHE40 LEU41 TYR42 ASP43 GLY44 ILE45 THR46 LYS47 LEU48 THR49 SER50 ILE51 SER52 GLU53 ASN54 GLY55 THR56 ILE57 MET58 ASN59 LEU60 GLN61 TYR62 TYR63 LYS64 GLY65 ALA66 PHE67 VAL68 ILE69 MET70 SER71 GLY72 PHE73 ILE74 ASP75 THR76 GLU77 THR78 SER79 VAL80 GLY81 TYR82 TYR83 ASN84 LEU85 GLU86 VAL87 ILE88 SER89 GLU90 GLN91 ALA92 THR93 ALA94 TYR95 VAL96 ILE97 LYS98 ILE99 ASN100 GLU101 LEU102 LYS103 GLU104 LEU105 LEU106 SER107 LYS108 ASN109 LEU110 THR111 HIS112 PHE113 PHE114 TYR115 VAL116 PHE117 GLN118 THR119 LEU120 GLN121 LYS122 GLN123 VAL124 SER125 TYR126 SER127 LEU128 ALA129 LYS130 PHE131 ASN132 ASP133 PHE134 SER135 ILE136 ASN137 GLY138 LYS139 LEU140 GLY141 SER142 ILE143 CYS144 GLY145 GLN146 LEU147 LEU148 ILE149 LEU150 THR151 TYR152 VAL153 TYR154 GLY155 LYS156 GLU157 THR158 PRO159 ASP160 GLY161 ILE162 LYS163 ILE164 THR165 LEU166 ASP167 ASN168 LEU169 THR170 MET171 GLN172 GLU173 LEU174 GLY175 TYR176 SER177 SER178 GLY179 ILE180 ALA181 HIS182 SER183 SER184 ALA185 VAL186 SER187 ARG188 ILE189 ILE190 SER191 LYS192 LEU193 LYS194 GLN195 GLU196 LYS197 VAL198 ILE199 VAL200 TYR201 LYS202 ASN203 SER204 CYS205 PHE206 TYR207 VAL208 GLN209 ASN210 LEU211 ASP212 TYR213 LEU214 LYS215 ARG216 TYR217 ALA218 PRO219 LYS220 LEU221 ASP222 GLU223 TRP224 PHE225 TYR226 LEU227 ALA228 CYS229 PRO230 ALA231 THR232 TRP233 GLY234 LYS235 LEU236 ASN237
Unit 2 ASN2 ALA3 GLN4 ALA5 GLU6 GLU7 PHE8 LYS9 LYS10 TYR11 LEU12 GLU13 THR14 ASN15 GLY16 ILE17 LYS18 PRO19 LYS20 GLN21 PHE22 HIS23 LYS24 LYS25 GLU26 LEU27 ILE28 PHE29 ASN30 GLN31 TRP32 ASP33 PRO34 GLN35 GLU36 TYR37 CYS38 ILE39 PHE40 LEU41 TYR42 ASP43 GLY44 ILE45 THR46 LYS47 LEU48 THR49 SER50 ILE51 SER52 GLU53 ASN54 GLY55 THR56 ILE57 MET58 ASN59 LEU60 GLN61 TYR62 TYR63 LYS64 GLY65 ALA66 PHE67 VAL68 ILE69 MET70 SER71 GLY72 PHE73 ILE74 ASP75 THR76 GLU77 THR78 SER79 VAL80 GLY81 TYR82 TYR83 ASN84 LEU85 GLU86 VAL87 ILE88 SER89 GLU90 GLN91 ALA92 THR93 ALA94 TYR95 VAL96 ILE97 LYS98 ILE99 ASN100 GLU101 LEU102 LYS103 GLU104 LEU105 LEU106 SER107 LYS108 ASN109 LEU110 THR111 HIS112 PHE113 PHE114 TYR115 VAL116 PHE117 GLN118 THR119 LEU120 GLN121 LYS122 GLN123 VAL124 SER125 TYR126 SER127 LEU128 ALA129 LYS130 PHE131 ASN132 ASP133 PHE134 SER135 ILE136 ASN137 GLY138 LYS139 LEU140 GLY141 SER142 ILE143 CYS144 GLY145 GLN146 LEU147 LEU148 ILE149 LEU150 THR151 TYR152 VAL153 TYR154 GLY155 LYS156 GLU157 THR158 PRO159 ASP160 GLY161 ILE162 LYS163 ILE164 THR165 LEU166 ASP167 ASN168 LEU169 THR170 MET171 GLN172 GLU173 LEU174 GLY175 TYR176 SER177 SER178 GLY179 ILE180 ALA181 HIS182 SER183 SER184 ALA185 VAL186 SER187 ARG188 ILE189 ILE190 SER191 LYS192 LEU193 LYS194 GLN195 GLU196 LYS197 VAL198 ILE199 VAL200 TYR201 LYS202 ASN203 SER204 CYS205 PHE206 TYR207 VAL208 GLN209 ASN210 LEU211 ASP212 TYR213 LEU214 LYS215 ARG216 TYR217 ALA218 PRO219 LYS220 LEU221 ASP222 GLU223 TRP224 PHE225 TYR226 LEU227 ALA228 CYS229 PRO230 ALA231 THR232 TRP233 GLY234 LYS235 LEU236 ASN237
Unit 5 ASN2 ALA3 GLN4 ALA5 GLU6 GLU7 PHE8 LYS9 LYS10 TYR11 LEU12 GLU13 THR14 ASN15 GLY16 ILE17 LYS18 PRO19 LYS20 GLN21 PHE22 HIS23 LYS24 LYS25 GLU26 LEU27 ILE28 PHE29 ASN30 GLN31 TRP32 ASP33 PRO34 GLN35 GLU36 TYR37 CYS38 ILE39 PHE40 LEU41 TYR42 ASP43 GLY44 ILE45 THR46 LYS47 LEU48 THR49 SER50 ILE51 SER52 GLU53 ASN54 GLY55 THR56 ILE57 MET58 ASN59 LEU60 GLN61 TYR62 TYR63 LYS64 GLY65 ALA66 PHE67 VAL68 ILE69 MET70 SER71 GLY72 PHE73 ILE74 ASP75 THR76 GLU77 THR78 SER79 VAL80 GLY81 TYR82 TYR83 ASN84 LEU85 GLU86 VAL87 ILE88 SER89 GLU90 GLN91 ALA92 THR93 ALA94 TYR95 VAL96 ILE97 LYS98 ILE99 ASN100 GLU101 LEU102 LYS103 GLU104 LEU105 LEU106 SER107 LYS108 ASN109 LEU110 THR111 HIS112 PHE113 PHE114 TYR115 VAL116 PHE117 GLN118 THR119 LEU120 GLN121 LYS122 GLN123 VAL124 SER125 TYR126 SER127 LEU128 ALA129 LYS130 PHE131 ASN132 ASP133 PHE134 SER135 ILE136 ASN137 GLY138 LYS139 LEU140 GLY141 SER142 ILE143 CYS144 GLY145 GLN146 LEU147 LEU148 ILE149 LEU150 THR151 TYR152 VAL153 TYR154 GLY155 LYS156 GLU157 THR158 PRO159 ASP160 GLY161 ILE162 LYS163 ILE164 THR165 LEU166 ASP167 ASN168 LEU169 THR170 MET171 GLN172 GLU173 LEU174 GLY175 TYR176 SER177 SER178 GLY179 ILE180 ALA181 HIS182 SER183 SER184 ALA185 VAL186 SER187 ARG188 ILE189 ILE190 SER191 LYS192 LEU193 LYS194 GLN195 GLU196 LYS197 VAL198 ILE199 VAL200 TYR201 LYS202 ASN203 SER204 CYS205 PHE206 TYR207 VAL208 GLN209 ASN210 LEU211 ASP212 TYR213 LEU214 LYS215 ARG216 TYR217 ALA218 PRO219 LYS220 LEU221 ASP222 GLU223 TRP224 PHE225 TYR226 LEU227 ALA228 CYS229 PRO230 ALA231 THR232 TRP233 GLY234 LYS235 LEU236 ASN237
Unit 6 ASN2 ALA3 GLN4 ALA5 GLU6 GLU7 PHE8 LYS9 LYS10 TYR11 LEU12 GLU13 THR14 ASN15 GLY16 ILE17 LYS18 PRO19 LYS20 GLN21 PHE22 HIS23 LYS24 LYS25 GLU26 LEU27 ILE28 PHE29 ASN30 GLN31 TRP32 ASP33 PRO34 GLN35 GLU36 TYR37 CYS38 ILE39 PHE40 LEU41 TYR42 ASP43 GLY44 ILE45 THR46 LYS47 LEU48 THR49 SER50 ILE51 SER52 GLU53 ASN54 GLY55 THR56 ILE57 MET58 ASN59 LEU60 GLN61 TYR62 TYR63 LYS64 GLY65 ALA66 PHE67 VAL68 ILE69 MET70 SER71 GLY72 PHE73 ILE74 ASP75 THR76 GLU77 THR78 SER79 VAL80 GLY81 TYR82 TYR83 ASN84 LEU85 GLU86 VAL87 ILE88 SER89 GLU90 GLN91 ALA92 THR93 ALA94 TYR95 VAL96 ILE97 LYS98 ILE99 ASN100 GLU101 LEU102 LYS103 GLU104 LEU105 LEU106 SER107 LYS108 ASN109 LEU110 THR111 HIS112 PHE113 PHE114 TYR115 VAL116 PHE117 GLN118 THR119 LEU120 GLN121 LYS122 GLN123 VAL124 SER125 TYR126 SER127 LEU128 ALA129 LYS130 PHE131 ASN132 ASP133 PHE134 SER135 ILE136 ASN137 GLY138 LYS139 LEU140 GLY141 SER142 ILE143 CYS144 GLY145 GLN146 LEU147 LEU148 ILE149 LEU150 THR151 TYR152 VAL153 TYR154 GLY155 LYS156 GLU157 THR158 PRO159 ASP160 GLY161 ILE162 LYS163 ILE164 THR165 LEU166 ASP167 ASN168 LEU169 THR170 MET171 GLN172 GLU173 LEU174 GLY175 TYR176 SER177 SER178 GLY179 ILE180 ALA181 HIS182 SER183 SER184 ALA185 VAL186 SER187 ARG188 ILE189 ILE190 SER191 LYS192 LEU193 LYS194 GLN195 GLU196 LYS197 VAL198 ILE199 VAL200 TYR201 LYS202 ASN203 SER204 CYS205 PHE206 TYR207 VAL208 GLN209 ASN210 LEU211 ASP212 TYR213 LEU214 LYS215 ARG216 TYR217 ALA218 PRO219 LYS220 LEU221 ASP222 GLU223 TRP224 PHE225 TYR226 LEU227 ALA228 CYS229 PRO230 ALA231 THR232 TRP233 GLY234 LYS235 LEU236 ASN237
Unit 9 ASN2 ALA3 GLN4 ALA5 GLU6 GLU7 PHE8 LYS9 LYS10 TYR11 LEU12 GLU13 THR14 ASN15 GLY16 ILE17 LYS18 PRO19 LYS20 GLN21 PHE22 HIS23 LYS24 LYS25 GLU26 LEU27 ILE28 PHE29 ASN30 GLN31 TRP32 ASP33 PRO34 GLN35 GLU36 TYR37 CYS38 ILE39 PHE40 LEU41 TYR42 ASP43 GLY44 ILE45 THR46 LYS47 LEU48 THR49 SER50 ILE51 SER52 GLU53 ASN54 GLY55 THR56 ILE57 MET58 ASN59 LEU60 GLN61 TYR62 TYR63 LYS64 GLY65 ALA66 PHE67 VAL68 ILE69 MET70 SER71 GLY72 PHE73 ILE74 ASP75 THR76 GLU77 THR78 SER79 VAL80 GLY81 TYR82 TYR83 ASN84 LEU85 GLU86 VAL87 ILE88 SER89 GLU90 GLN91 ALA92 THR93 ALA94 TYR95 VAL96 ILE97 LYS98 ILE99 ASN100 GLU101 LEU102 LYS103 GLU104 LEU105 LEU106 SER107 LYS108 ASN109 LEU110 THR111 HIS112 PHE113 PHE114 TYR115 VAL116 PHE117 GLN118 THR119 LEU120 GLN121 LYS122 GLN123 VAL124 SER125 TYR126 SER127 LEU128 ALA129 LYS130 PHE131 ASN132 ASP133 PHE134 SER135 ILE136 ASN137 GLY138 LYS139 LEU140 GLY141 SER142 ILE143 CYS144 GLY145 GLN146 LEU147 LEU148 ILE149 LEU150 THR151 TYR152 VAL153 TYR154 GLY155 LYS156 GLU157 THR158 PRO159 ASP160 GLY161 ILE162 LYS163 ILE164 THR165 LEU166 ASP167 ASN168 LEU169 THR170 MET171 GLN172 GLU173 LEU174 GLY175 TYR176 SER177 SER178 GLY179 ILE180 ALA181 HIS182 SER183 SER184 ALA185 VAL186 SER187 ARG188 ILE189 ILE190 SER191 LYS192 LEU193 LYS194 GLN195 GLU196 LYS197 VAL198 ILE199 VAL200 TYR201 LYS202 ASN203 SER204 CYS205 PHE206 TYR207 VAL208 GLN209 ASN210 LEU211 ASP212 TYR213 LEU214 LYS215 ARG216 TYR217 ALA218 PRO219 LYS220 LEU221 ASP222 GLU223 TRP224 PHE225 TYR226 LEU227 ALA228 CYS229 PRO230 ALA231 THR232 TRP233 GLY234 LYS235 LEU236 ASN237
Unit 10 ASN2 ALA3 GLN4 ALA5 GLU6 GLU7 PHE8 LYS9 LYS10 TYR11 LEU12 GLU13 THR14 ASN15 GLY16 ILE17 LYS18 PRO19 LYS20 GLN21 PHE22 HIS23 LYS24 LYS25 GLU26 LEU27 ILE28 PHE29 ASN30 GLN31 TRP32 ASP33 PRO34 GLN35 GLU36 TYR37 CYS38 ILE39 PHE40 LEU41 TYR42 ASP43 GLY44 ILE45 THR46 LYS47 LEU48 THR49 SER50 ILE51 SER52 GLU53 ASN54 GLY55 THR56 ILE57 MET58 ASN59 LEU60 GLN61 TYR62 TYR63 LYS64 GLY65 ALA66 PHE67 VAL68 ILE69 MET70 SER71 GLY72 PHE73 ILE74 ASP75 THR76 GLU77 THR78 SER79 VAL80 GLY81 TYR82 TYR83 ASN84 LEU85 GLU86 VAL87 ILE88 SER89 GLU90 GLN91 ALA92 THR93 ALA94 TYR95 VAL96 ILE97 LYS98 ILE99 ASN100 GLU101 LEU102 LYS103 GLU104 LEU105 LEU106 SER107 LYS108 ASN109 LEU110 THR111 HIS112 PHE113 PHE114 TYR115 VAL116 PHE117 GLN118 THR119 LEU120 GLN121 LYS122 GLN123 VAL124 SER125 TYR126 SER127 LEU128 ALA129 LYS130 PHE131 ASN132 ASP133 PHE134 SER135 ILE136 ASN137 GLY138 LYS139 LEU140 GLY141 SER142 ILE143 CYS144 GLY145 GLN146 LEU147 LEU148 ILE149 LEU150 THR151 TYR152 VAL153 TYR154 GLY155 LYS156 GLU157 THR158 PRO159 ASP160 GLY161 ILE162 LYS163 ILE164 THR165 LEU166 ASP167 ASN168 LEU169 THR170 MET171 GLN172 GLU173 LEU174 GLY175 TYR176 SER177 SER178 GLY179 ILE180 ALA181 HIS182 SER183 SER184 ALA185 VAL186 SER187 ARG188 ILE189 ILE190 SER191 LYS192 LEU193 LYS194 GLN195 GLU196 LYS197 VAL198 ILE199 VAL200 TYR201 LYS202 ASN203 SER204 CYS205 PHE206 TYR207 VAL208 GLN209 ASN210 LEU211 ASP212 TYR213 LEU214 LYS215 ARG216 TYR217 ALA218 PRO219 LYS220 LEU221 ASP222 GLU223 TRP224 PHE225 TYR226 LEU227 ALA228 CYS229 PRO230 ALA231 THR232 TRP233 GLY234 LYS235 LEU236 ASN237

Other macromolecules
Unit 3 DC1 DA2 DT3 DC4 DG5 DT6 DC7 DG8 DT9 DT10 DA11 DA12 DC13 DA14 DA15 DA16 DT17 DG18 DT19 DT20 DA21 DA22 DT23 DG24 DC25 DC26 DT27 DA28 DC29
Unit 4 DG2 DT3 DA4 DG5 DG6 DC7 DA8 DT9 DT10 DA11 DA12 DC13 DA14 DT15 DT16 DT17 DG18 DT19 DT20 DA21 DA22 DC23 DG24 DA25 DC26 DG27 DA28 DT29
Unit 7 DC1 DA2 DT3 DC4 DG5 DT6 DC7 DG8 DT9 DT10 DA11 DA12 DC13 DA14 DA15 DA16 DT17 DG18 DT19 DT20 DA21 DA22 DT23 DG24 DC25 DC26 DT27 DA28 DC29
Unit 8 DG1 DG2 DT3 DA4 DG5 DG6 DC7 DA8 DT9 DT10 DA11 DA12 DC13 DA14 DT15 DT16 DT17 DG18 DT19 DT20 DA21 DA22 DC23 DG24 DA25 DC26 DG27 DA28 DT29
Unit 11 DA2 DT3 DC4 DG5 DT6 DC7 DG8 DT9 DT10 DA11 DA12 DC13 DA14 DA15 DA16 DT17 DG18 DT19 DT20 DA21 DA22 DT23 DG24 DC25 DC26 DT27 DA28 DC29
Unit 12 DG1 DG2 DT3 DA4 DG5 DG6 DC7 DA8 DT9 DT10 DA11 DA12 DC13 DA14 DT15 DT16 DT17 DG18 DT19 DT20 DA21 DA22 DC23 DG24 DA25 DC26 DG27 DA28 DT29

Ligands
Unit 13 GSH301
Unit 14 GSH301
Unit 15 GSH301
Unit 16 GSH301
Unit 17 GSH301
Unit 18 GSH301

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany