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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF MULTIDONOR HV6-1-CLASS BROADLY NEUTRALI INFLUENZA A ANTIBODY 56.A.09 IN COMPLEX WITH HEMAGGLUTININ 1968.
Keywords INFLUENZA, MULTIDONOR, H5, UNIVERSAL INFLUENZA VACCINE, IMMU
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5K9K     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   56.A.09 HEAVY CHAIN  A 226 1710 0
2  Protein   56.A.09 LIGHT CHAIN  B 215 1652 0
3  Protein   HEMAGGLUTININ  I 490 3865 0
4  Protein   56.A.09 HEAVY CHAIN  H 224 1695 0
5  Protein   56.A.09 LIGHT CHAIN  L 215 1652 0
6  Protein   HEMAGGLUTININ  F 497 3912 0
7  Ligand    C 5 0 61
8  Ligand    D 3 0 39
9  Ligand    E 2 0 28
10  Ligand    G 5 0 61
11  Ligand    J 5 0 61
12  Ligand    K 5 0 61
13  Ligand    M 6 0 72
14  Ligand    N 3 0 39
15  Ligand    O 5 0 61
16  Ligand    P 5 0 61
17  Ligand   HEMAGGLUTININ  I 2 0 28
18  Ligand   HEMAGGLUTININ  F 2 0 28
total       1915 14486 600
Proteins
Unit 1 GLN1 VAL2 GLN3 LEU4 GLN5 GLN6 SER7 GLY8 PRO9 GLY10 LEU11 VAL12 LYS13 PRO14 SER15 GLN16 THR17 LEU18 SER19 LEU20 THR21 CYS22 VAL23 ILE24 SER25 GLY26 ASP27 THR28 VAL29 SER30 SER31 ASN32 ARG33 ALA34 ALA35 TRP35A ASN35B TRP36 ILE37 ARG38 GLN39 SER40 PRO41 SER42 ARG43 GLY44 LEU45 GLU46 TRP47 LEU48 GLY49 ARG50 THR51 TYR52 TYR52A ARG52B SER53 LYS54 TRP55 TYR56 THR57 ASP58 TYR59 ALA60 VAL61 SER62 VAL63 LYS64 SER65 ARG66 ILE67 THR68 ILE69 THR70 PRO71 ASP72 THR73 SER74 LYS75 ASN76 GLN77 PHE78 SER79 LEU80 GLN81 MET82 LYS82A SER82B VAL82C THR83 PRO84 GLU85 ASP86 THR87 ALA88 VAL89 TYR90 TYR91 CYS92 ALA93 ARG94 GLY95 SER96 ALA97 MET98 ILE99 PHE100 GLY100A ILE100B VAL100C ILE100D ILE100E LEU100F GLU101 SER102 TRP103 GLY104 GLN105 GLY106 THR107 LEU108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 SER128 LYS129 SER130 GLY134 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 SER187 SER188 LEU189 GLY190 THR191 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 LYS210 VAL211 GLU212 PRO213 LYS214 SER215 CYS216
Unit 2 GLU1 ILE2 VAL3 LEU4 THR5 GLN6 SER7 PRO8 GLY9 THR10 LEU11 SER12 LEU13 SER14 PRO15 GLY16 GLU17 ARG18 ALA19 THR20 LEU21 SER22 CYS23 ARG24 ALA25 SER26 GLN27 SER27A VAL28 ALA29 SER30 SER31 TYR32 LEU33 ALA34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 GLN42 ALA43 PRO44 ARG45 LEU46 LEU47 ILE48 TYR49 GLY50 ALA51 SER52 SER53 ARG54 ALA55 THR56 GLY57 VAL58 PRO59 ASP60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 ILE72 LEU73 THR74 ILE75 SER76 ARG77 LEU78 GLU79 PRO80 GLU81 ASP82 PHE83 ALA84 VAL85 TYR86 TYR87 CYS88 GLN89 GLN90 TYR91 ASP92 GLY93 SER94 GLN95 TYR96 THR97 PHE98 GLY99 GLN100 GLY101 THR102 LYS103 LEU104 GLU105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211 GLY212 GLU213 CYS214
Unit 3 ASN6 ASP7 ASN8 SER9 THR10 ALA11 THR12 LEU13 CYS14 LEU15 GLY16 HIS17 HIS18 ALA19 VAL20 PRO21 ASN22 GLY23 THR24 LEU25 VAL26 LYS27 THR28 ILE29 THR30 ASP31 ASP32 GLN33 ILE34 GLU35 VAL36 THR37 ASN38 ALA39 THR40 GLU41 LEU42 VAL43 GLN44 SER45 SER46 SER47 THR48 GLY49 LYS50 ILE51 CYS52 ASN53 ASN54 PRO55 HIS56 ARG57 ILE58 LEU59 ASP60 GLY61 ILE62 ASP63 CYS64 THR65 LEU66 ILE67 ASP68 ALA69 LEU70 LEU71 GLY72 ASP73 PRO74 HIS75 CYS76 ASP77 VAL78 PHE79 GLN80 ASN81 GLU82 THR83 TRP84 ASP85 LEU86 PHE87 VAL88 GLU89 ARG90 SER91 LYS92 ALA93 PHE94 SER95 ASN96 CYS97 TYR98 PRO99 TYR100 ASP101 VAL102 PRO103 ASP104 TYR105 ALA106 SER107 LEU108 ARG109 SER110 LEU111 VAL112 ALA113 SER114 SER115 GLY116 THR117 LEU118 GLU119 PHE120 ILE121 THR122 GLU123 GLY124 PHE125 THR126 TRP127 THR128 GLY129 VAL130 THR131 GLN132 ASN133 GLY134 GLY135 SER136 ASN137 ALA138 CYS139 LYS140 ARG141 GLY142 PRO143 GLY144 SER145 GLY146 PHE147 PHE148 SER149 ARG150 LEU151 ASN152 TRP153 LEU154 THR155 LYS156 SER157 GLY158 SER159 THR160 TYR161 PRO162 VAL163 LEU164 ASN165 VAL166 THR167 MET168 PRO169 ASN170 ASN171 ASP172 ASN173 PHE174 ASP175 LYS176 LEU177 TYR178 ILE179 TRP180 GLY181 VAL182 HIS183 HIS184 PRO185 SER186 THR187 ASN188 GLN189 GLU190 GLN191 THR192 SER193 LEU194 TYR195 VAL196 GLN197 ALA198 SER199 GLY200 ARG201 VAL202 THR203 VAL204 SER205 THR206 ARG207 ARG208 SER209 GLN210 GLN211 THR212 ILE213 ILE214 PRO215 ASN216 ILE217 GLU218 SER219 ARG220 PRO221 TRP222 VAL223 ARG224 GLY225 LEU226 SER227 SER228 ARG229 ILE230 SER231 ILE232 TYR233 TRP234 THR235 ILE236 VAL237 LYS238 PRO239 GLY240 ASP241 VAL242 LEU243 VAL244 ILE245 ASN246 SER247 ASN248 GLY249 ASN250 LEU251 ILE252 ALA253 PRO254 ARG255 GLY256 TYR257 PHE258 LYS259 MET260 ARG261 THR262 GLY263 LYS264 SER265 SER266 ILE267 MET268 ARG269 SER270 ASP271 ALA272 PRO273 ILE274 ASP275 THR276 CYS277 ILE278 SER279 GLU280 CYS281 ILE282 THR283 PRO284 ASN285 GLY286 SER287 ILE288 PRO289 ASN290 ASP291 LYS292 PRO293 PHE294 GLN295 ASN296 VAL297 ASN298 LYS299 ILE300 THR301 TYR302 GLY303 ALA304 CYS305 PRO306 LYS307 TYR308 VAL309 LYS310 GLN311 ASN312 THR313 LEU314 LYS315 LEU316 ALA317 THR318 GLY319 MET320 ARG321 ASN322 VAL323 PRO324 GLU325 LYS326 GLN327 THR328 ILE335 ALA336 GLY337 PHE338 ILE339 GLU340 ASN341 GLY342 TRP343 GLU344 GLY345 MET346 ILE347 ASP348 GLY349 TRP350 TYR351 GLY352 PHE353 ARG354 HIS355 GLN356 ASN357 SER358 GLU359 GLY360 THR361 GLY362 GLN363 ALA364 ALA365 ASP366 LEU367 LYS368 SER369 THR370 GLN371 ALA372 ALA373 ILE374 ASP375 GLN376 ILE377 ASN378 GLY379 LYS380 LEU381 ASN382 ARG383 VAL384 ILE385 GLU386 LYS387 THR388 ASN389 GLU390 LYS391 PHE392 HIS393 GLN394 ILE395 GLU396 LYS397 GLU398 PHE399 SER400 GLU401 VAL402 GLU403 GLY404 ARG405 ILE406 GLN407 ASP408 LEU409 GLU410 LYS411 TYR412 VAL413 GLU414 ASP415 THR416 LYS417 ILE418 ASP419 LEU420 TRP421 SER422 TYR423 ASN424 ALA425 GLU426 LEU427 LEU428 VAL429 ALA430 LEU431 GLU432 ASN433 GLN434 HIS435 THR436 ILE437 ASP438 LEU439 THR440 ASP441 SER442 GLU443 MET444 ASN445 LYS446 LEU447 PHE448 GLU449 LYS450 THR451 ARG452 ARG453 GLN454 LEU455 ARG456 GLU457 ASN458 ALA459 GLU460 ASP461 MET462 GLY463 ASN464 GLY465 CYS466 PHE467 LYS468 ILE469 TYR470 HIS471 LYS472 CYS473 ASP474 ASN475 ALA476 CYS477 ILE478 GLU479 SER480 ILE481 ARG482 ASN483 GLY484 THR485 TYR486 ASP487 HIS488 ASP489 VAL490 TYR491 ARG492 ASP493 GLU494 ALA495 LEU496 ASN497 ASN498 ARG499 PHE500 GLN501
Unit 4 GLN1 VAL2 GLN3 LEU4 GLN5 GLN6 SER7 GLY8 PRO9 GLY10 LEU11 VAL12 LYS13 PRO14 SER15 GLN16 THR17 LEU18 SER19 LEU20 THR21 CYS22 VAL23 ILE24 SER25 GLY26 ASP27 THR28 VAL29 SER30 SER31 ASN32 ARG33 ALA34 ALA35 TRP35A ASN35B TRP36 ILE37 ARG38 GLN39 SER40 PRO41 SER42 ARG43 GLY44 LEU45 GLU46 TRP47 LEU48 GLY49 ARG50 THR51 TYR52 TYR52A ARG52B SER53 LYS54 TRP55 TYR56 THR57 ASP58 TYR59 ALA60 VAL61 SER62 VAL63 LYS64 SER65 ARG66 ILE67 THR68 ILE69 THR70 PRO71 ASP72 THR73 SER74 LYS75 ASN76 GLN77 PHE78 SER79 LEU80 GLN81 MET82 LYS82A SER82B VAL82C THR83 PRO84 GLU85 ASP86 THR87 ALA88 VAL89 TYR90 TYR91 CYS92 ALA93 ARG94 GLY95 SER96 ALA97 MET98 ILE99 PHE100 GLY100A ILE100B VAL100C ILE100D ILE100E LEU100F GLU101 SER102 TRP103 GLY104 GLN105 GLY106 THR107 LEU108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 SER128 GLY134 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 SER187 SER188 LEU189 GLY190 THR191 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 LYS210 VAL211 GLU212 PRO213 LYS214 SER215 CYS216
Unit 5 GLU1 ILE2 VAL3 LEU4 THR5 GLN6 SER7 PRO8 GLY9 THR10 LEU11 SER12 LEU13 SER14 PRO15 GLY16 GLU17 ARG18 ALA19 THR20 LEU21 SER22 CYS23 ARG24 ALA25 SER26 GLN27 SER27A VAL28 ALA29 SER30 SER31 TYR32 LEU33 ALA34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 GLN42 ALA43 PRO44 ARG45 LEU46 LEU47 ILE48 TYR49 GLY50 ALA51 SER52 SER53 ARG54 ALA55 THR56 GLY57 VAL58 PRO59 ASP60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 ILE72 LEU73 THR74 ILE75 SER76 ARG77 LEU78 GLU79 PRO80 GLU81 ASP82 PHE83 ALA84 VAL85 TYR86 TYR87 CYS88 GLN89 GLN90 TYR91 ASP92 GLY93 SER94 GLN95 TYR96 THR97 PHE98 GLY99 GLN100 GLY101 THR102 LYS103 LEU104 GLU105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211 GLY212 GLU213 CYS214
Unit 6 PRO4 GLY5 ASN6 ASP7 ASN8 SER9 THR10 ALA11 THR12 LEU13 CYS14 LEU15 GLY16 HIS17 HIS18 ALA19 VAL20 PRO21 ASN22 GLY23 THR24 LEU25 VAL26 LYS27 THR28 ILE29 THR30 ASP31 ASP32 GLN33 ILE34 GLU35 VAL36 THR37 ASN38 ALA39 THR40 GLU41 LEU42 VAL43 GLN44 SER45 SER46 SER47 THR48 GLY49 LYS50 ILE51 CYS52 ASN53 ASN54 PRO55 HIS56 ARG57 ILE58 LEU59 ASP60 GLY61 ILE62 ASP63 CYS64 THR65 LEU66 ILE67 ASP68 ALA69 LEU70 LEU71 GLY72 ASP73 PRO74 HIS75 CYS76 ASP77 VAL78 PHE79 GLN80 ASN81 GLU82 THR83 TRP84 ASP85 LEU86 PHE87 VAL88 GLU89 ARG90 SER91 LYS92 ALA93 PHE94 SER95 ASN96 CYS97 TYR98 PRO99 TYR100 ASP101 VAL102 PRO103 ASP104 TYR105 ALA106 SER107 LEU108 ARG109 SER110 LEU111 VAL112 ALA113 SER114 SER115 GLY116 THR117 LEU118 GLU119 PHE120 ILE121 THR122 GLU123 GLY124 PHE125 THR126 TRP127 THR128 GLY129 VAL130 THR131 GLN132 ASN133 GLY134 GLY135 SER136 ASN137 ALA138 CYS139 LYS140 ARG141 GLY142 PRO143 GLY144 SER145 GLY146 PHE147 PHE148 SER149 ARG150 LEU151 ASN152 TRP153 LEU154 THR155 LYS156 SER157 GLY158 SER159 THR160 TYR161 PRO162 VAL163 LEU164 ASN165 VAL166 THR167 MET168 PRO169 ASN170 ASN171 ASP172 ASN173 PHE174 ASP175 LYS176 LEU177 TYR178 ILE179 TRP180 GLY181 VAL182 HIS183 HIS184 PRO185 SER186 THR187 ASN188 GLN189 GLU190 GLN191 THR192 SER193 LEU194 TYR195 VAL196 GLN197 ALA198 SER199 GLY200 ARG201 VAL202 THR203 VAL204 SER205 THR206 ARG207 ARG208 SER209 GLN210 GLN211 THR212 ILE213 ILE214 PRO215 ASN216 ILE217 GLU218 SER219 ARG220 PRO221 TRP222 VAL223 ARG224 GLY225 LEU226 SER227 SER228 ARG229 ILE230 SER231 ILE232 TYR233 TRP234 THR235 ILE236 VAL237 LYS238 PRO239 GLY240 ASP241 VAL242 LEU243 VAL244 ILE245 ASN246 SER247 ASN248 GLY249 ASN250 LEU251 ILE252 ALA253 PRO254 ARG255 GLY256 TYR257 PHE258 LYS259 MET260 ARG261 THR262 GLY263 LYS264 SER265 SER266 ILE267 MET268 ARG269 SER270 ASP271 ALA272 PRO273 ILE274 ASP275 THR276 CYS277 ILE278 SER279 GLU280 CYS281 ILE282 THR283 PRO284 ASN285 GLY286 SER287 ILE288 PRO289 ASN290 ASP291 LYS292 PRO293 PHE294 GLN295 ASN296 VAL297 ASN298 LYS299 ILE300 THR301 TYR302 GLY303 ALA304 CYS305 PRO306 LYS307 TYR308 VAL309 LYS310 GLN311 ASN312 THR313 LEU314 LYS315 LEU316 ALA317 THR318 GLY319 MET320 ARG321 ASN322 VAL323 PRO324 GLU325 LYS326 GLN327 ARG329 GLY330 LEU331 PHE332 GLY333 ALA334 ILE335 ALA336 GLY337 PHE338 ILE339 GLU340 ASN341 GLY342 TRP343 GLU344 GLY345 MET346 ILE347 ASP348 GLY349 TRP350 TYR351 GLY352 PHE353 ARG354 HIS355 GLN356 ASN357 SER358 GLU359 GLY360 THR361 GLY362 GLN363 ALA364 ALA365 ASP366 LEU367 LYS368 SER369 THR370 GLN371 ALA372 ALA373 ILE374 ASP375 GLN376 ILE377 ASN378 GLY379 LYS380 LEU381 ASN382 ARG383 VAL384 ILE385 GLU386 LYS387 THR388 ASN389 GLU390 LYS391 PHE392 HIS393 GLN394 ILE395 GLU396 LYS397 GLU398 PHE399 SER400 GLU401 VAL402 GLU403 GLY404 ARG405 ILE406 GLN407 ASP408 LEU409 GLU410 LYS411 TYR412 VAL413 GLU414 ASP415 THR416 LYS417 ILE418 ASP419 LEU420 TRP421 SER422 TYR423 ASN424 ALA425 GLU426 LEU427 LEU428 VAL429 ALA430 LEU431 GLU432 ASN433 GLN434 HIS435 THR436 ILE437 ASP438 LEU439 THR440 ASP441 SER442 GLU443 MET444 ASN445 LYS446 LEU447 PHE448 GLU449 LYS450 THR451 ARG452 ARG453 GLN454 LEU455 ARG456 GLU457 ASN458 ALA459 GLU460 ASP461 MET462 GLY463 ASN464 GLY465 CYS466 PHE467 LYS468 ILE469 TYR470 HIS471 LYS472 CYS473 ASP474 ASN475 ALA476 CYS477 ILE478 GLU479 SER480 ILE481 ARG482 ASN483 GLY484 THR485 TYR486 ASP487 HIS488 ASP489 VAL490 TYR491 ARG492 ASP493 GLU494 ALA495 LEU496 ASN497 ASN498 ARG499 PHE500 GLN501
Ligands
Unit 7 NAG1 NAG2 BMA3 MAN4 MAN5
Unit 8 NAG1 NAG2 BMA3
Unit 9 NAG1 NAG2
Unit 10 NAG1 NAG2 BMA3 MAN4 MAN5
Unit 11 NAG1 NAG2 BMA3 MAN4 MAN5
Unit 12 NAG1 NAG2 BMA3 MAN4 MAN5
Unit 13 NAG1 NAG2 BMA3 MAN4 MAN5 MAN6
Unit 14 NAG1 NAG2 BMA3
Unit 15 NAG1 NAG2 BMA3 MAN4 MAN5
Unit 16 NAG1 NAG2 BMA3 MAN4 MAN5
Unit 17 NAG601 NAG602
Unit 18 NAG601 NAG621
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany