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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF CHICKEN LGP2 WITH 5'PPP 26-MER HAIRPIN 3' GG OVERHANG AND ADP-ALF4-MG2+ AT 2.0 A RESOLUTION.
Keywords INNATE IMMUNE PATTERN RECOGNITION RECEPTOR, RIG-I LIKE HELIC DSRNA DEPENDENT ATPASE, ZINC-CONTAINING CTD DOMAIN, IMMUNE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5JBG     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   LGP2  A 661 5290 0
2  RNA    X 23 474 32
3  Ligand   LGP2  A 8 0 54
4  Ligand   RNA (5'- R(*GPPP*GP*AP*GP*CP*GP*UP*GP*CP*CP*GP*GP*GP*CP*AP*CP*GP*CP* P*G)-3')  X 1 0 5
5 Water     268 0 268
total       961 5764 359
Proteins
Unit 1 SER1 GLU2 LEU3 HIS4 GLY5 TYR6 GLN7 LEU8 GLU9 ALA10 VAL11 ALA12 PRO13 ALA14 LEU15 ARG16 GLY17 ARG18 ASN19 SER20 ILE21 VAL22 TRP23 LEU24 PRO25 THR26 GLY27 ALA28 GLY29 LYS30 THR31 ARG32 ALA33 ALA34 VAL35 HIS36 VAL37 CYS38 ARG39 ARG40 HIS41 LEU42 GLU43 GLY44 ARG45 ARG46 GLY47 GLY48 ARG49 VAL50 ALA51 VAL52 LEU53 VAL54 ASN55 LYS56 VAL57 HIS58 LEU59 VAL60 GLN61 GLN62 HIS63 LEU64 GLU65 LYS66 GLU67 PHE68 HIS69 VAL70 LEU71 ARG72 ASP73 ALA74 PHE75 LYS76 VAL77 THR78 ALA79 VAL80 SER81 GLY82 ASP83 SER84 SER85 HIS86 LYS87 CYS88 PHE89 PHE90 GLY91 GLN92 LEU93 ALA94 LYS95 GLY96 SER97 ASP98 VAL99 VAL100 ILE101 CYS102 THR103 ALA104 GLN105 ILE106 LEU107 GLN108 ASN109 ALA110 LEU111 LEU112 SER113 GLY114 GLU115 GLU116 GLU117 ALA118 ARG119 VAL120 GLU121 LEU122 THR123 ASP124 PHE125 SER126 LEU127 LEU128 VAL129 ILE130 ASP131 GLU132 CYS133 HIS134 HIS135 THR136 GLN137 LYS138 GLU139 ALA140 VAL141 TYR142 ASN143 LYS144 ILE145 MET146 LEU147 SER148 TYR149 LEU150 GLN151 LYS152 LYS153 LEU154 SER155 GLY156 GLN157 ARG158 ASP159 LEU160 PRO161 GLN162 ILE163 LEU164 GLY165 LEU166 THR167 ALA168 SER169 PRO170 GLY171 THR172 GLY173 GLY174 GLU175 THR176 SER177 PHE178 GLU179 GLY180 ALA181 VAL182 GLU183 HIS184 ILE185 LEU186 GLN187 ILE188 CYS189 ALA190 ASN191 LEU192 ASP193 THR194 GLU195 VAL196 ILE197 ALA198 SER199 ALA200 GLN201 GLU202 VAL211 PRO212 GLN213 PRO214 THR215 LYS216 GLN217 TYR218 ASP219 LEU220 CYS221 GLN222 GLU223 ARG224 GLU225 GLN226 ASP227 PRO228 PHE229 GLY230 GLN231 ARG232 LEU233 LYS234 LYS235 ILE236 MET237 ALA238 GLN239 ILE240 GLN241 GLU242 HIS243 MET244 GLU245 MET246 PRO247 GLU248 LEU249 PRO250 GLN251 ASN252 PHE253 GLY254 THR255 GLN256 VAL257 TYR258 GLU259 GLN260 ARG261 ILE262 VAL263 GLU264 LEU265 GLU266 ASN267 ARG268 ALA269 ALA270 GLU271 ARG272 PHE273 CYS274 ARG275 LYS276 THR277 ARG278 VAL279 CYS280 ALA281 LEU282 HIS283 LEU284 ARG285 ARG286 TYR287 ASN288 ASP289 ALA290 LEU291 LEU292 ILE293 ASN294 ASP295 THR296 VAL297 ARG298 MET299 MET300 ASP301 ALA302 PHE303 GLN304 CYS305 LEU306 GLN307 GLN308 PHE309 TYR310 ALA311 ASP312 LYS313 LYS317 ASP318 PRO319 THR320 GLU321 ARG322 PHE323 LEU324 ALA325 THR326 THR327 PHE328 GLU329 GLU330 ASN331 ARG332 ALA333 THR334 LEU335 GLN336 ALA337 LEU338 ALA339 GLY340 ASP341 GLN342 ARG343 TYR344 GLU345 ASN346 PRO347 ARG348 LEU349 SER350 LYS351 LEU352 GLU353 GLU354 ILE355 LEU356 GLN357 GLU358 HIS359 PHE360 GLN361 PRO362 GLY364 SER365 SER366 ARG367 GLY368 ILE369 VAL370 PHE371 THR372 LYS373 THR374 ARG375 GLN376 SER377 ALA378 HIS379 SER380 LEU381 LEU382 SER383 TRP384 LEU385 GLN386 ASP387 THR388 ALA389 GLY390 LEU391 CYS392 GLY393 GLN394 HIS395 ILE396 ARG397 ALA398 ALA399 VAL400 LEU401 THR402 GLY403 SER404 GLY405 HIS406 SER407 ASN408 GLN409 ALA410 LYS411 GLY412 MET413 THR414 GLN415 ASN416 GLU417 GLN418 GLN419 ASP420 VAL421 ILE422 THR423 LEU424 PHE425 ARG426 TYR427 GLY428 GLU429 LEU430 ASN431 LEU432 LEU433 PHE434 SER435 THR436 SER437 VAL438 ALA439 GLU440 GLU441 GLY442 LEU443 ASP444 ILE445 PRO446 GLU447 CYS448 ASN449 ILE450 VAL451 VAL452 ARG453 TYR454 GLY455 LEU456 MET457 THR458 ASN459 GLU460 ILE461 ALA462 MET463 VAL464 GLN465 ALA466 GLN467 GLY468 ARG469 ALA470 ARG471 ALA472 GLN473 ASN474 SER475 MET476 TYR477 SER478 VAL479 LEU480 ALA481 LYS482 ALA483 ASN484 SER485 ARG486 GLU487 VAL488 TYR489 ARG490 GLU491 GLN492 LEU493 ASN494 GLU495 SER496 LEU497 VAL498 GLY499 LEU500 MET501 GLU502 ARG503 ALA504 ILE505 ARG506 ALA507 VAL508 GLN509 ALA510 MET511 PRO512 GLU513 ARG514 LYS515 TYR516 ARG517 LEU518 LYS519 ILE520 VAL521 GLU522 LEU523 GLN524 ARG525 ASN526 ALA527 VAL528 LEU529 SER530 TRP531 GLN532 VAL533 LYS534 GLU535 ALA536 ARG537 SER538 SER539 GLU540 ARG541 ARG542 GLN543 LEU544 HIS545 ASP546 PRO547 ASP548 ASP549 VAL550 TYR551 PHE552 HIS553 CYS554 VAL555 ASN556 CYS557 ASN558 VAL559 ALA560 VAL561 CYS562 ARG563 GLY564 SER565 ASP566 ILE567 ARG568 THR569 VAL570 GLU571 ALA572 MET573 HIS574 HIS575 VAL576 ASN577 ILE578 ASN579 PRO580 ASN581 PHE582 ARG583 PHE584 TYR585 TYR586 THR587 VAL588 SER589 SER590 GLY591 LYS592 ILE593 HIS594 PHE595 GLU596 ARG597 THR598 PHE599 ARG600 ASP601 TRP602 GLU603 PRO604 GLY605 CYS606 ARG607 ILE608 VAL609 CYS610 SER611 GLU612 CYS613 ARG614 GLN615 GLU616 TRP617 GLY618 MET619 GLU620 MET621 ILE622 TYR623 ARG624 ASN625 VAL626 THR627 LEU628 PRO629 ILE630 LEU631 SER632 ILE633 LYS634 ASN635 PHE636 VAL637 VAL638 VAL639 THR640 PRO641 ASP642 GLU643 LYS644 LYS645 LYS646 TYR647 LYS648 LYS649 TRP650 SER651 THR652 VAL653 THR654 PHE655 PRO656 ILE657 GLU658 GLU659 PHE660 SER661 TYR662 LEU663 GLU664 TYR665 CYS666 SER667 SER668 THR669 GLN670 ASP671 GLU672 SER673
Nucleic acids
Unit 2 GTP1 G2 A3 G4 C5 G6 U7 G8 C9 C10 G11 G15 G16 C17 A18 C19 G20 C21 U22 C23 C24 G25 G26
Ligands
Unit 3 ZN701 ADP702 ALF703 MG704 SO4705 SO4706 SO4707 SO4708
Unit 4 SO4101
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany