5GGR - Sequence, Chains, Asymmetric and Biological Units

• Title: PD-1 IN COMPLEX WITH NIVOLUMAB FAB
• Keywords: ANTIBODY, IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5GGR	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	HEAVY CHAIN	A	209	1571	0
2	Protein	LIGHT CHAIN	B	212	1630	0
3	Protein	HEAVY CHAIN	H	207	1561	0
4	Protein	LIGHT CHAIN	L	212	1630	0
5	Protein	PROGRAMMED CELL DEATH PROTEIN 1	Y	118	931	0
6	Protein	PROGRAMMED CELL DEATH PROTEIN 1	Z	117	924	0
total				1075	8247	0

Proteins

Unit 1	VAL 2 GLN 3 LEU 4 VAL 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 VAL 11 VAL 12 GLN 13 PRO 14 GLY 15 ARG 16 SER 17 LEU 18 ARG 19 LEU 20 ASP 21 CYS 22 LYS 23 ALA 24 SER 25 GLY 26 ILE 27 THR 28 PHE 29 SER 30 ASN 31 SER 32 GLY 33 MET 34 HIS 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 VAL 48 ALA 49 VAL 50 ILE 51 TRP 52 TYR 53 ASP 54 GLY 55 SER 56 LYS 57 ARG 58 TYR 59 TYR 60 ALA 61 ASP 62 SER 63 VAL 64 LYS 65 GLY 66 ARG 67 PHE 68 THR 69 ILE 70 SER 71 ARG 72 ASP 73 ASN 74 SER 75 LYS 76 ASN 77 THR 78 LEU 79 PHE 80 LEU 81 GLN 82 MET 83 ASN 84 SER 85 LEU 86 ARG 87 ALA 88 GLU 89 ASP 90 THR 91 ALA 92 VAL 93 TYR 94 TYR 95 CYS 96 ALA 97 THR 98 ASN 99 ASP 100 ASP 101 TYR 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 SER 115 THR 116 LYS 117 GLY 118 PRO 119 SER 120 VAL 121 PHE 122 PRO 123 LEU 124 ALA 125 PRO 126 SER 127 SER 128 SER 132 GLY 133 GLY 134 THR 135 ALA 136 ALA 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 ASP 144 TYR 145 PHE 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 VAL 152 SER 153 TRP 154 ASN 155 SER 156 GLY 157 ALA 158 LEU 159 THR 160 SER 161 GLY 162 VAL 163 HIS 164 THR 165 PHE 166 PRO 167 ALA 168 VAL 169 LEU 170 GLN 171 SER 172 SER 173 GLY 174 LEU 175 TYR 176 SER 177 LEU 178 SER 179 SER 180 VAL 181 VAL 182 THR 183 VAL 184 PRO 185 SER 186 SER 187 SER 188 LEU 189 GLY 190 THR 191 GLN 192 THR 193 TYR 194 ILE 195 CYS 196 ASN 197 VAL 198 ASN 199 HIS 200 LYS 201 PRO 202 SER 203 ASN 204 THR 205 LYS 206 VAL 207 ASP 208 LYS 209 LYS 210 VAL 211 GLU 212 PRO 213
Unit 2	GLU 1 ILE 2 VAL 3 LEU 4 THR 5 GLN 6 SER 7 PRO 8 ALA 9 THR 10 LEU 11 SER 12 LEU 13 SER 14 PRO 15 GLY 16 GLU 17 ARG 18 ALA 19 THR 20 LEU 21 SER 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 SER 28 VAL 29 SER 30 SER 31 TYR 32 LEU 33 ALA 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 PRO 40 GLY 41 GLN 42 ALA 43 PRO 44 ARG 45 LEU 46 LEU 47 ILE 48 TYR 49 ASP 50 ALA 51 SER 52 ASN 53 ARG 54 ALA 55 THR 56 GLY 57 ILE 58 PRO 59 ALA 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 ASP 70 PHE 71 THR 72 LEU 73 THR 74 ILE 75 SER 76 SER 77 LEU 78 GLU 79 PRO 80 GLU 81 ASP 82 PHE 83 ALA 84 VAL 85 TYR 86 TYR 87 CYS 88 GLN 89 GLN 90 SER 91 SER 92 ASN 93 TRP 94 PRO 95 ARG 96 THR 97 PHE 98 GLY 99 GLN 100 GLY 101 THR 102 LYS 103 VAL 104 GLU 105 ILE 106 LYS 107 ARG 108 THR 109 VAL 110 ALA 111 ALA 112 PRO 113 SER 114 VAL 115 PHE 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 ASP 122 GLU 123 GLN 124 LEU 125 LYS 126 SER 127 GLY 128 THR 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 LEU 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 ARG 142 GLU 143 ALA 144 LYS 145 VAL 146 GLN 147 TRP 148 LYS 149 VAL 150 ASP 151 ASN 152 ALA 153 LEU 154 GLN 155 SER 156 GLY 157 ASN 158 SER 159 GLN 160 GLU 161 SER 162 VAL 163 THR 164 GLU 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 LEU 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 SER 182 LYS 183 ALA 184 ASP 185 TYR 186 GLU 187 LYS 188 HIS 189 LYS 190 VAL 191 TYR 192 ALA 193 CYS 194 GLU 195 VAL 196 THR 197 HIS 198 GLN 199 GLY 200 LEU 201 SER 202 SER 203 PRO 204 VAL 205 THR 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211 GLY 212
Unit 3	VAL 2 GLN 3 LEU 4 VAL 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 VAL 11 VAL 12 GLN 13 PRO 14 GLY 15 ARG 16 SER 17 LEU 18 ARG 19 LEU 20 ASP 21 CYS 22 LYS 23 ALA 24 SER 25 GLY 26 ILE 27 THR 28 PHE 29 SER 30 ASN 31 SER 32 GLY 33 MET 34 HIS 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 VAL 48 ALA 49 VAL 50 ILE 51 TRP 52 TYR 53 ASP 54 GLY 55 SER 56 LYS 57 ARG 58 TYR 59 TYR 60 ALA 61 ASP 62 SER 63 VAL 64 LYS 65 GLY 66 ARG 67 PHE 68 THR 69 ILE 70 SER 71 ARG 72 ASP 73 ASN 74 SER 75 LYS 76 ASN 77 THR 78 LEU 79 PHE 80 LEU 81 GLN 82 MET 83 ASN 84 SER 85 LEU 86 ARG 87 ALA 88 GLU 89 ASP 90 THR 91 ALA 92 VAL 93 TYR 94 TYR 95 CYS 96 ALA 97 THR 98 ASN 99 ASP 100 ASP 101 TYR 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 SER 115 THR 116 LYS 117 GLY 118 PRO 119 SER 120 VAL 121 PHE 122 PRO 123 LEU 124 ALA 125 PRO 126 SER 127 SER 128 GLY 134 THR 135 ALA 136 ALA 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 ASP 144 TYR 145 PHE 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 VAL 152 SER 153 TRP 154 ASN 155 SER 156 GLY 157 ALA 158 LEU 159 THR 160 SER 161 GLY 162 VAL 163 HIS 164 THR 165 PHE 166 PRO 167 ALA 168 VAL 169 LEU 170 GLN 171 SER 172 SER 173 GLY 174 LEU 175 TYR 176 SER 177 LEU 178 SER 179 SER 180 VAL 181 VAL 182 THR 183 VAL 184 PRO 185 SER 186 SER 187 SER 188 LEU 189 GLY 190 THR 191 GLN 192 THR 193 TYR 194 ILE 195 CYS 196 ASN 197 VAL 198 ASN 199 HIS 200 LYS 201 PRO 202 SER 203 ASN 204 THR 205 LYS 206 VAL 207 ASP 208 LYS 209 LYS 210 VAL 211 GLU 212 PRO 213
Unit 4	GLU 1 ILE 2 VAL 3 LEU 4 THR 5 GLN 6 SER 7 PRO 8 ALA 9 THR 10 LEU 11 SER 12 LEU 13 SER 14 PRO 15 GLY 16 GLU 17 ARG 18 ALA 19 THR 20 LEU 21 SER 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 SER 28 VAL 29 SER 30 SER 31 TYR 32 LEU 33 ALA 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 PRO 40 GLY 41 GLN 42 ALA 43 PRO 44 ARG 45 LEU 46 LEU 47 ILE 48 TYR 49 ASP 50 ALA 51 SER 52 ASN 53 ARG 54 ALA 55 THR 56 GLY 57 ILE 58 PRO 59 ALA 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 ASP 70 PHE 71 THR 72 LEU 73 THR 74 ILE 75 SER 76 SER 77 LEU 78 GLU 79 PRO 80 GLU 81 ASP 82 PHE 83 ALA 84 VAL 85 TYR 86 TYR 87 CYS 88 GLN 89 GLN 90 SER 91 SER 92 ASN 93 TRP 94 PRO 95 ARG 96 THR 97 PHE 98 GLY 99 GLN 100 GLY 101 THR 102 LYS 103 VAL 104 GLU 105 ILE 106 LYS 107 ARG 108 THR 109 VAL 110 ALA 111 ALA 112 PRO 113 SER 114 VAL 115 PHE 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 ASP 122 GLU 123 GLN 124 LEU 125 LYS 126 SER 127 GLY 128 THR 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 LEU 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 ARG 142 GLU 143 ALA 144 LYS 145 VAL 146 GLN 147 TRP 148 LYS 149 VAL 150 ASP 151 ASN 152 ALA 153 LEU 154 GLN 155 SER 156 GLY 157 ASN 158 SER 159 GLN 160 GLU 161 SER 162 VAL 163 THR 164 GLU 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 LEU 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 SER 182 LYS 183 ALA 184 ASP 185 TYR 186 GLU 187 LYS 188 HIS 189 LYS 190 VAL 191 TYR 192 ALA 193 CYS 194 GLU 195 VAL 196 THR 197 HIS 198 GLN 199 GLY 200 LEU 201 SER 202 SER 203 PRO 204 VAL 205 THR 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211 GLY 212
Unit 5	SER 27 PRO 28 ASP 29 ARG 30 PRO 31 TRP 32 ASN 33 PRO 34 PRO 35 THR 36 PHE 37 SER 38 PRO 39 ALA 40 LEU 41 LEU 42 VAL 43 VAL 44 THR 45 GLU 46 GLY 47 ASP 48 ASN 49 ALA 50 THR 51 PHE 52 THR 53 CYS 54 SER 55 PHE 56 SER 57 ASN 58 THR 59 SER 60 GLU 61 SER 62 PHE 63 VAL 64 LEU 65 ASN 66 TRP 67 TYR 68 ARG 69 MET 70 SER 71 PRO 72 GLN 75 THR 76 ASP 77 LYS 78 LEU 79 ALA 80 ALA 81 PHE 82 PRO 83 GLU 84 ASP 85 ARG 86 SER 87 GLN 88 PRO 89 GLY 90 GLN 91 ASP 92 SER 93 ARG 94 PHE 95 ARG 96 VAL 97 THR 98 GLN 99 LEU 100 PRO 101 ASN 102 GLY 103 ARG 104 ASP 105 PHE 106 HIS 107 MET 108 SER 109 VAL 110 VAL 111 ARG 112 ALA 113 ARG 114 ARG 115 ASN 116 ASP 117 SER 118 GLY 119 THR 120 TYR 121 LEU 122 CYS 123 GLY 124 ALA 125 ILE 126 SER 127 LEU 128 ALA 129 PRO 130 LYS 131 ALA 132 GLN 133 ILE 134 LYS 135 GLU 136 SER 137 LEU 138 ARG 139 ALA 140 GLU 141 LEU 142 ARG 143 VAL 144 THR 145 GLU 146
Unit 6	SER 27 PRO 28 ASP 29 ARG 30 PRO 31 TRP 32 ASN 33 PRO 34 PRO 35 THR 36 PHE 37 SER 38 PRO 39 ALA 40 LEU 41 LEU 42 VAL 43 VAL 44 THR 45 GLU 46 GLY 47 ASP 48 ASN 49 ALA 50 THR 51 PHE 52 THR 53 CYS 54 SER 55 PHE 56 SER 57 ASN 58 THR 59 SER 60 GLU 61 SER 62 PHE 63 VAL 64 LEU 65 ASN 66 TRP 67 TYR 68 ARG 69 MET 70 SER 71 GLN 75 THR 76 ASP 77 LYS 78 LEU 79 ALA 80 ALA 81 PHE 82 PRO 83 GLU 84 ASP 85 ARG 86 SER 87 GLN 88 PRO 89 GLY 90 GLN 91 ASP 92 SER 93 ARG 94 PHE 95 ARG 96 VAL 97 THR 98 GLN 99 LEU 100 PRO 101 ASN 102 GLY 103 ARG 104 ASP 105 PHE 106 HIS 107 MET 108 SER 109 VAL 110 VAL 111 ARG 112 ALA 113 ARG 114 ARG 115 ASN 116 ASP 117 SER 118 GLY 119 THR 120 TYR 121 LEU 122 CYS 123 GLY 124 ALA 125 ILE 126 SER 127 LEU 128 ALA 129 PRO 130 LYS 131 ALA 132 GLN 133 ILE 134 LYS 135 GLU 136 SER 137 LEU 138 ARG 139 ALA 140 GLU 141 LEU 142 ARG 143 VAL 144 THR 145 GLU 146