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Sequence, Chains, Asymmetric and Biological Units

Title ASSOCIATION OF FOUR TWO-K-TURN UNITS BASED ON KT-7 3BG,3NC, FORMING A SQUARE-SHAPED STRUCTURE
Keywords DNA BINDING, KINK TURN, L7AE, NANO CRYSTAL PACKING, NANOTECH
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5G4V     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 19 412 0
2  RNA    B 19 412 0
3  Protein   50S RIBOSOMAL PROTEIN L7AE  C 117 900 0
4  Protein   50S RIBOSOMAL PROTEIN L7AE  D 117 900 0
5  RNA    E 19 412 0
6  RNA    F 19 412 0
7  Protein   50S RIBOSOMAL PROTEIN L7AE  G 117 900 0
8  Protein   50S RIBOSOMAL PROTEIN L7AE  H 117 900 0
total       544 5248 0

Proteins
Unit 3 SER1 TYR2 VAL3 ARG4 PHE5 GLU6 VAL7 PRO8 GLU9 ASP10 MET11 GLN12 ASN13 GLU14 ALA15 LEU16 SER17 LEU18 LEU19 GLU20 LYS21 VAL22 ARG23 GLU24 SER25 GLY26 LYS27 VAL28 LYS29 LYS30 GLY31 THR32 ASN33 GLU34 THR35 THR36 LYS37 ALA38 VAL39 GLU40 ARG41 GLY42 LEU43 ALA44 LYS45 LEU46 VAL47 TYR48 ILE49 ALA50 GLU51 ASP52 VAL53 ASP54 PRO55 PRO56 GLU57 ILE58 VAL59 ALA60 HIS61 LEU62 PRO63 LEU64 LEU65 CYS66 GLU67 GLU68 LYS69 ASN70 VAL71 PRO72 TYR73 ILE74 TYR75 VAL76 LYS77 SER78 LYS79 ASN80 ASP81 LEU82 GLY83 ARG84 ALA85 VAL86 GLY87 ILE88 GLU89 VAL90 PRO91 CYS92 ALA93 SER94 ALA95 ALA96 ILE97 ILE98 ASN99 GLU100 GLY101 GLU102 LEU103 ARG104 LYS105 GLU106 LEU107 GLY108 SER109 LEU110 VAL111 GLU112 LYS113 ILE114 LYS115 GLY116 LEU117
Unit 4 SER1 TYR2 VAL3 ARG4 PHE5 GLU6 VAL7 PRO8 GLU9 ASP10 MET11 GLN12 ASN13 GLU14 ALA15 LEU16 SER17 LEU18 LEU19 GLU20 LYS21 VAL22 ARG23 GLU24 SER25 GLY26 LYS27 VAL28 LYS29 LYS30 GLY31 THR32 ASN33 GLU34 THR35 THR36 LYS37 ALA38 VAL39 GLU40 ARG41 GLY42 LEU43 ALA44 LYS45 LEU46 VAL47 TYR48 ILE49 ALA50 GLU51 ASP52 VAL53 ASP54 PRO55 PRO56 GLU57 ILE58 VAL59 ALA60 HIS61 LEU62 PRO63 LEU64 LEU65 CYS66 GLU67 GLU68 LYS69 ASN70 VAL71 PRO72 TYR73 ILE74 TYR75 VAL76 LYS77 SER78 LYS79 ASN80 ASP81 LEU82 GLY83 ARG84 ALA85 VAL86 GLY87 ILE88 GLU89 VAL90 PRO91 CYS92 ALA93 SER94 ALA95 ALA96 ILE97 ILE98 ASN99 GLU100 GLY101 GLU102 LEU103 ARG104 LYS105 GLU106 LEU107 GLY108 SER109 LEU110 VAL111 GLU112 LYS113 ILE114 LYS115 GLY116 LEU117
Unit 7 SER1 TYR2 VAL3 ARG4 PHE5 GLU6 VAL7 PRO8 GLU9 ASP10 MET11 GLN12 ASN13 GLU14 ALA15 LEU16 SER17 LEU18 LEU19 GLU20 LYS21 VAL22 ARG23 GLU24 SER25 GLY26 LYS27 VAL28 LYS29 LYS30 GLY31 THR32 ASN33 GLU34 THR35 THR36 LYS37 ALA38 VAL39 GLU40 ARG41 GLY42 LEU43 ALA44 LYS45 LEU46 VAL47 TYR48 ILE49 ALA50 GLU51 ASP52 VAL53 ASP54 PRO55 PRO56 GLU57 ILE58 VAL59 ALA60 HIS61 LEU62 PRO63 LEU64 LEU65 CYS66 GLU67 GLU68 LYS69 ASN70 VAL71 PRO72 TYR73 ILE74 TYR75 VAL76 LYS77 SER78 LYS79 ASN80 ASP81 LEU82 GLY83 ARG84 ALA85 VAL86 GLY87 ILE88 GLU89 VAL90 PRO91 CYS92 ALA93 SER94 ALA95 ALA96 ILE97 ILE98 ASN99 GLU100 GLY101 GLU102 LEU103 ARG104 LYS105 GLU106 LEU107 GLY108 SER109 LEU110 VAL111 GLU112 LYS113 ILE114 LYS115 GLY116 LEU117
Unit 8 SER1 TYR2 VAL3 ARG4 PHE5 GLU6 VAL7 PRO8 GLU9 ASP10 MET11 GLN12 ASN13 GLU14 ALA15 LEU16 SER17 LEU18 LEU19 GLU20 LYS21 VAL22 ARG23 GLU24 SER25 GLY26 LYS27 VAL28 LYS29 LYS30 GLY31 THR32 ASN33 GLU34 THR35 THR36 LYS37 ALA38 VAL39 GLU40 ARG41 GLY42 LEU43 ALA44 LYS45 LEU46 VAL47 TYR48 ILE49 ALA50 GLU51 ASP52 VAL53 ASP54 PRO55 PRO56 GLU57 ILE58 VAL59 ALA60 HIS61 LEU62 PRO63 LEU64 LEU65 CYS66 GLU67 GLU68 LYS69 ASN70 VAL71 PRO72 TYR73 ILE74 TYR75 VAL76 LYS77 SER78 LYS79 ASN80 ASP81 LEU82 GLY83 ARG84 ALA85 VAL86 GLY87 ILE88 GLU89 VAL90 PRO91 CYS92 ALA93 SER94 ALA95 ALA96 ILE97 ILE98 ASN99 GLU100 GLY101 GLU102 LEU103 ARG104 LYS105 GLU106 LEU107 GLY108 SER109 LEU110 VAL111 GLU112 LYS113 ILE114 LYS115 GLY116 LEU117

Nucleic acids
Unit 1 G1 G2 C3 G4 A5 A6 G7 A8 G9 C10 C11 G12 G13 C14 G15 A16 G17 C18 C19
Unit 2 G1 G2 C3 G4 A5 A6 G7 A8 G9 C10 C11 G12 G13 C14 G15 A16 G17 C18 C19
Unit 5 G1 G2 C3 G4 A5 A6 G7 A8 G9 C10 C11 G12 G13 C14 G15 A16 G17 C18 C19
Unit 6 G1 G2 C3 G4 A5 A6 G7 A8 G9 C10 C11 G12 G13 C14 G15 A16 G17 C18 C19

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany