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Title | STRUCTURAL AND DYNAMIC BASIS FOR LOW AFFINITY-HIGH SELECTIVI OF L-GLUTAMINE BY THE GLN-RIBOSWITCH | |
Keywords | RIBOSWITCH, L-GLUTAMINE, FREE-FORM, RNA, RNA BINDING PROTEIN COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 5DDO | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | A | 58 | 1240 | 0 | |
2 | Protein | L-GLUTAMINE RIBOSWITCH (58-MER)U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A | G | 86 | 653 | 0 |
3 | RNA | B | 58 | 1240 | 0 | |
4 | Protein | L-GLUTAMINE RIBOSWITCH (58-MER)U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A | C | 87 | 647 | 0 |
5 | Water | 11 | 0 | 11 | ||
total | 300 | 3780 | 11 |
Unit 2 | ARG7 PRO8 ASN9 HIS10 THR11 ILE12 TYR13 ILE14 ASN15 ASN16 LEU17 ASN18 GLU19 LYS20 ILE21 LYS22 LYS23 ASP24 GLU25 LEU26 LYS27 LYS28 SER29 LEU30 HIS31 ALA32 ILE33 PHE34 SER35 ARG36 PHE37 GLY38 GLN39 ILE40 LEU41 ASP42 ILE43 LEU44 VAL45 SER46 ARG47 SER48 LEU49 LYS50 MET51 ARG52 GLY53 GLN54 ALA55 PHE56 VAL57 ILE58 PHE59 LYS60 GLU61 VAL62 SER63 SER64 ALA65 THR66 ASN67 ALA68 LEU69 ARG70 SER71 MET72 GLN73 GLY74 PHE75 PRO76 PHE77 TYR78 ASP79 LYS80 PRO81 MET82 ARG83 ILE84 GLN85 TYR86 ALA87 LYS88 THR89 ASP90 SER91 ASP92 |
Unit 4 | THR6 ARG7 PRO8 ASN9 HIS10 THR11 ILE12 TYR13 ILE14 ASN15 ASN16 LEU17 ASN18 GLU19 LYS20 ILE21 LYS22 LYS23 ASP24 GLU25 LEU26 LYS27 LYS28 SER29 LEU30 HIS31 ALA32 ILE33 PHE34 SER35 ARG36 PHE37 GLY38 GLN39 ILE40 LEU41 ASP42 ILE43 LEU44 VAL45 SER46 ARG47 SER48 LEU49 LYS50 MET51 ARG52 GLY53 GLN54 ALA55 PHE56 VAL57 ILE58 PHE59 LYS60 GLU61 VAL62 SER63 SER64 ALA65 THR66 ASN67 ALA68 LEU69 ARG70 SER71 MET72 GLN73 GLY74 PHE75 PRO76 PHE77 TYR78 ASP79 LYS80 PRO81 MET82 ARG83 ILE84 GLN85 TYR86 ALA87 LYS88 THR89 ASP90 SER91 ASP92 |
Unit 1 | C1 G2 U3 U4 G5 G6 C7 C8 C9 A10 G11 G12 A13 A14 A15 C16 U17 G18 G19 G20 U21 A25 G26 U27 A28 A29 G30 G31 U32 C33 C34 A35 U36 U37 G38 C39 A40 C41 U42 C43 C44 G45 G46 G47 C48 C49 U50 G51 A52 A53 G54 C55 A56 A57 C58 G59 C60 U61 |
Unit 3 | C1 G2 U3 U4 G5 G6 C7 C8 C9 A10 G11 G12 A13 A14 A15 C16 U17 G18 G19 G20 U21 A25 G26 U27 A28 A29 G30 G31 U32 C33 C34 A35 U36 U37 G38 C39 A40 C41 U42 C43 C44 G45 G46 G47 C48 C49 U50 G51 A52 A53 G54 C55 A56 A57 C58 G59 C60 U61 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |