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Sequence, Chains, Asymmetric and Biological Units

Title PROBING THE STRUCTURAL AND MOLECULAR BASIS OF NUCLEOTIDE SEL BY HUMAN MITOCHONDRIAL DNA POLYMERASE GAMMA
Keywords NUCLEOSIDE REVERSE TRANSCRIPTASE INHIBITORS (NRTIS), HIV REV TRANSCRIPTASE (RT), HUMAN MITOCHONDRIAL DNA POLYMERASE, TRA DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5C52     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA POLYMERASE SUBUNIT GAMMA-1  A 983 7799 0
2  Protein   DNA POLYMERASE SUBUNIT GAMMA-2, MITOCHONDRIAL  B 363 2943 0
3  Protein   DNA POLYMERASE SUBUNIT GAMMA-2, MITOCHONDRIAL  C 358 2887 0
4  Other macromolecule   DNA (26-MER)  T 26 529 0
5  DNA    P 22 433 18
6  Ligand   DNA POLYMERASE SUBUNIT GAMMA-1  A 3 0 30
total       1755 14591 48
Proteins
Unit 1 MET78 LEU79 SER80 ARG81 GLY82 LEU83 HIS84 GLU85 GLN86 ILE87 PHE88 GLY89 GLN90 GLY91 GLY92 GLU93 MET94 PRO95 GLY96 GLU97 ALA98 ALA99 VAL100 ARG101 ARG102 SER103 VAL104 GLU105 HIS106 LEU107 GLN108 LYS109 HIS110 GLY111 LEU112 TRP113 GLY114 GLN115 PRO116 ALA117 VAL118 PRO119 LEU120 PRO121 ASP122 VAL123 GLU124 LEU125 ARG126 LEU127 PRO128 PRO129 LEU130 TYR131 GLY132 ASP133 ASN134 LEU135 ASP136 GLN137 HIS138 PHE139 ARG140 LEU141 LEU142 ALA143 GLN144 LYS145 GLN146 SER147 LEU148 PRO149 TYR150 LEU151 GLU152 ALA153 ALA154 ASN155 LEU156 LEU157 LEU158 GLN159 ALA160 GLN161 LEU162 PRO163 PRO164 LYS165 PRO166 PRO167 ALA168 TRP169 ALA170 TRP171 ALA172 GLU173 GLY174 TRP175 THR176 ARG177 TYR178 GLY179 PRO180 GLU181 GLY182 GLU183 ALA184 VAL185 PRO186 VAL187 ALA188 ILE189 PRO190 GLU191 GLU192 ARG193 ALA194 LEU195 VAL196 PHE197 ASP198 VAL199 GLU200 VAL201 CYS202 LEU203 ALA204 GLU205 GLY206 THR207 CYS208 PRO209 THR210 LEU211 ALA212 VAL213 ALA214 ILE215 SER216 PRO217 SER218 ALA219 TRP220 TYR221 SER222 TRP223 CYS224 SER225 GLN226 ARG227 LEU228 VAL229 GLU230 GLU231 ARG232 TYR233 SER234 TRP235 THR236 SER237 GLN238 LEU239 SER240 PRO241 ALA242 ASP243 LEU244 ILE245 PRO246 LEU247 GLU248 VAL249 GLN262 GLU263 GLN264 LEU265 VAL266 VAL267 GLY268 HIS269 ASN270 VAL271 SER272 PHE273 ASP274 ARG275 ALA276 HIS277 ILE278 ARG279 GLU280 GLN281 TYR282 LEU283 ILE284 GLN285 GLY286 SER287 ARG288 MET289 ARG290 PHE291 LEU292 ASP293 THR294 MET295 SER296 MET297 HIS298 MET299 ALA300 ILE301 SER302 GLY303 LEU304 SER305 SER306 PHE307 GLN308 ARG309 SER310 LEU311 TRP312 ILE313 ALA314 ALA315 LYS316 ALA341 ILE342 SER343 SER344 TRP345 ASP346 TRP347 LEU348 ASP349 ILE350 SER351 SER352 VAL353 ASN354 SER355 LEU356 ALA357 GLU358 VAL359 HIS360 ARG361 LEU362 TYR363 VAL364 GLY365 GLY366 PRO367 PRO368 LEU369 GLU370 LYS371 GLU372 PRO373 ARG374 GLU375 LEU376 PHE377 VAL378 LYS379 GLY380 THR381 MET382 LYS383 ASP384 ILE385 ARG386 GLU387 ASN388 PHE389 GLN390 ASP391 LEU392 MET393 GLN394 TYR395 CYS396 ALA397 GLN398 ASP399 VAL400 TRP401 ALA402 THR403 HIS404 GLU405 VAL406 PHE407 GLN408 GLN409 GLN410 LEU411 PRO412 LEU413 PHE414 LEU415 GLU416 ARG417 CYS418 PRO419 HIS420 PRO421 VAL422 THR423 LEU424 ALA425 GLY426 MET427 LEU428 GLU429 MET430 GLY431 VAL432 SER433 TYR434 LEU435 PRO436 VAL437 ASN438 GLN439 ASN440 TRP441 GLU442 ARG443 TYR444 LEU445 ALA446 GLU447 ALA448 GLN449 GLY450 THR451 TYR452 GLU453 GLU454 LEU455 GLN456 ARG457 GLU458 MET459 LYS460 LYS461 SER462 LEU463 MET464 ASP465 LEU466 ALA467 ASN468 ASP469 ALA470 CYS471 GLN472 LEU473 LEU474 SER475 GLY476 GLU477 ARG478 TYR479 LYS480 GLU481 ASP482 PRO483 TRP484 LEU485 TRP486 ASP487 LEU488 GLU489 TRP490 ASP491 LEU492 GLN493 GLU494 PHE495 LYS496 GLN497 LYS498 LYS499 ALA500 LYS501 LYS502 VAL503 LYS504 LYS505 GLU506 PRO507 ALA508 THR509 ALA510 LEU530 GLY531 PRO532 CYS533 SER534 GLU535 GLU536 GLU537 GLU538 PHE539 GLN540 GLN541 ASP542 VAL543 MET544 ALA545 ARG546 ALA547 CYS548 LEU549 GLN550 LYS551 LEU552 LYS553 GLY554 THR555 THR556 GLU557 LEU558 LEU559 PRO560 LYS561 ARG562 PRO563 GLN564 HIS565 LEU566 PRO567 GLY568 HIS569 PRO570 GLY571 TRP572 TYR573 ARG574 LYS575 LEU576 CYS577 PRO578 ARG579 LEU580 ASP581 ASP582 PRO583 ALA584 TRP585 THR586 PRO587 GLY588 PRO589 SER590 LEU591 LEU592 SER593 LEU594 GLN595 MET596 ARG597 VAL598 THR599 PRO600 LYS601 LEU602 MET603 ALA604 LEU605 THR606 TRP607 ASP608 GLY609 PHE610 PRO611 LEU612 HIS613 TYR614 SER615 GLU616 ARG617 HIS618 GLY619 TRP620 GLY621 TYR622 LEU623 ASN630 LEU631 ALA632 LYS633 LEU634 PRO635 THR636 GLY637 THR638 THR639 LEU640 GLU641 SER642 ALA643 GLY644 VAL645 VAL646 CYS647 PRO648 TYR649 ARG650 ALA651 ILE652 GLU653 SER654 LEU655 TYR656 ARG657 LYS658 HIS659 CYS660 LEU661 GLU662 PRO738 TYR739 ASN740 ASP741 VAL742 ASP743 ILE744 PRO745 GLY746 CYS747 TRP748 PHE749 PHE750 LYS751 LEU752 PRO753 HIS754 LYS755 ASP756 GLY757 ASN758 SER759 CYS760 ASN761 VAL762 GLY763 SER764 PRO765 PHE766 ALA767 LYS768 ASP769 PHE770 LEU771 PRO772 LYS773 MET774 GLU775 ASP776 GLY777 THR778 LEU779 GLN780 ALA781 GLY782 PRO783 GLY784 GLY785 ALA786 SER787 GLY788 PRO789 ARG790 ALA791 LEU792 GLU793 ILE794 ASN795 LYS796 MET797 ILE798 SER799 PHE800 TRP801 ARG802 ASN803 ALA804 HIS805 LYS806 ARG807 ILE808 SER809 SER810 GLN811 MET812 VAL813 VAL814 TRP815 LEU816 PRO817 ARG818 SER819 ALA820 LEU821 PRO822 ARG823 ALA824 VAL825 ILE826 ARG827 HIS828 PRO829 ASP830 TYR831 ASP832 GLU833 GLU834 GLY835 LEU836 TYR837 GLY838 ALA839 ILE840 LEU841 PRO842 GLN843 VAL844 VAL845 THR846 ALA847 GLY848 THR849 ILE850 THR851 ARG852 ARG853 ALA854 VAL855 GLU856 PRO857 THR858 TRP859 LEU860 THR861 ALA862 SER863 ASN864 ALA865 ARG866 PRO867 ASP868 ARG869 VAL870 GLY871 SER872 GLU873 LEU874 LYS875 ALA876 MET877 VAL878 GLN879 ALA880 PRO881 PRO882 GLY883 TYR884 THR885 LEU886 VAL887 GLY888 ALA889 ASP890 VAL891 ASP892 SER893 GLN894 GLU895 LEU896 TRP897 ILE898 ALA899 ALA900 VAL901 LEU902 GLY903 ASP904 ALA905 HIS906 PHE907 ALA908 GLY909 MET910 HIS911 GLY912 CYS913 THR914 ALA915 PHE916 GLY917 TRP918 MET919 THR920 LEU921 GLN922 GLY923 ARG924 LYS925 SER926 ARG927 GLY928 THR929 ASP930 LEU931 HIS932 SER933 LYS934 THR935 ALA936 THR937 THR938 VAL939 GLY940 ILE941 SER942 ARG943 GLU944 HIS945 ALA946 LYS947 ILE948 PHE949 ASN950 TYR951 GLY952 ARG953 ILE954 TYR955 GLY956 ALA957 GLY958 GLN959 PRO960 PHE961 ALA962 GLU963 ARG964 LEU965 LEU966 MET967 GLN968 PHE969 ASN970 HIS971 ARG972 LEU973 THR974 GLN975 GLN976 GLU977 ALA978 ALA979 GLU980 LYS981 ALA982 GLN983 GLN984 MET985 TYR986 ALA987 ALA988 THR989 LYS990 GLY991 LEU992 LEU1025 ARG1026 LYS1027 VAL1028 GLN1029 ARG1030 GLU1031 THR1032 ALA1033 ARG1034 LYS1035 SER1036 GLN1037 TRP1038 LYS1039 LYS1040 TRP1041 GLU1042 VAL1043 VAL1044 ALA1045 GLU1046 ARG1047 ALA1048 TRP1049 LYS1050 GLY1051 GLY1052 THR1053 GLU1054 SER1055 GLU1056 MET1057 PHE1058 ASN1059 LYS1060 LEU1061 GLU1062 SER1063 ILE1064 ALA1065 THR1066 SER1067 ASP1068 ILE1069 PRO1070 ARG1071 THR1072 PRO1073 VAL1074 LEU1075 GLY1076 CYS1077 CYS1078 ILE1079 SER1080 ARG1081 ALA1082 LEU1083 GLU1084 PRO1085 SER1086 ALA1087 VAL1088 GLN1089 GLU1090 GLU1091 PHE1092 MET1093 THR1094 SER1095 ARG1096 VAL1097 ASN1098 TRP1099 VAL1100 VAL1101 GLN1102 SER1103 SER1104 ALA1105 VAL1106 ASP1107 TYR1108 LEU1109 HIS1110 LEU1111 MET1112 LEU1113 VAL1114 ALA1115 MET1116 LYS1117 TRP1118 LEU1119 PHE1120 GLU1121 GLU1122 PHE1123 ALA1124 ILE1125 ASP1126 GLY1127 ARG1128 PHE1129 CYS1130 ILE1131 SER1132 ILE1133 HIS1134 ASP1135 GLU1136 VAL1137 ARG1138 TYR1139 LEU1140 VAL1141 ARG1142 GLU1143 GLU1144 ASP1145 ARG1146 TYR1147 ARG1148 ALA1149 ALA1150 LEU1151 ALA1152 LEU1153 GLN1154 ILE1155 THR1156 ASN1157 LEU1158 LEU1159 THR1160 ARG1161 CYS1162 MET1163 PHE1164 ALA1165 TYR1166 LYS1167 LEU1168 GLY1169 LEU1170 ASN1171 ASP1172 LEU1173 PRO1174 GLN1175 SER1176 VAL1177 ALA1178 PHE1179 PHE1180 SER1181 ALA1182 VAL1183 ASP1184 ILE1185 ASP1186 ARG1187 CYS1188 LEU1189 ARG1190 LYS1191 GLU1192 VAL1193 THR1194 MET1195 ASP1196 CYS1197 LYS1198 THR1199 PRO1200 SER1201 ASN1202 PRO1203 THR1204 GLY1205 MET1206 GLU1207 ARG1208 ARG1209 TYR1210 GLY1211 ILE1212 PRO1213 GLN1214 GLY1215 GLU1216 ALA1217 LEU1218 ASP1219 ILE1220 TYR1221 GLN1222 ILE1223 ILE1224 GLU1225 LEU1226 THR1227 LYS1228
Unit 2 ALA68 LEU69 LEU70 GLU71 ILE72 CYS73 GLN74 ARG75 ARG76 HIS77 PHE78 LEU79 SER80 GLY81 SER82 LYS83 GLN84 GLN85 LEU86 SER87 ARG88 ASP89 SER90 LEU91 LEU92 SER93 GLY94 CYS95 HIS96 PRO97 GLY98 PHE99 GLY100 PRO101 LEU102 GLY103 VAL104 GLU105 LEU106 ARG107 LYS108 ASN109 LEU110 ALA111 ALA112 GLU113 TRP114 TRP115 THR116 SER117 VAL118 VAL119 VAL120 PHE121 ARG122 GLU123 GLN124 VAL125 PHE126 PRO127 VAL128 ASP129 ALA130 LEU131 HIS132 HIS133 LYS134 PRO135 GLY136 GLY179 LYS180 LEU181 ARG182 GLU183 ASN184 LEU185 LEU186 HIS187 GLY188 ALA189 LEU190 GLU191 HIS192 TYR193 VAL194 ASN195 CYS196 LEU197 ASP198 LEU199 VAL200 ASN201 LYS202 ARG203 LEU204 PRO205 TYR206 GLY207 LEU208 ALA209 GLN210 ILE211 GLY212 VAL213 CYS214 PHE215 HIS216 PRO217 VAL218 PHE219 ASP220 THR221 LYS229 SER230 ILE231 GLY232 GLU233 LYS234 THR235 GLU236 ALA237 SER238 LEU239 VAL240 TRP241 PHE242 THR243 PRO244 PRO245 ARG246 THR247 SER248 ASN249 GLN250 TRP251 LEU252 ASP253 PHE254 TRP255 LEU256 ARG257 HIS258 ARG259 LEU260 GLN261 TRP262 TRP263 ARG264 LYS265 PHE266 ALA267 MET268 SER269 PRO270 SER271 ASN272 PHE273 SER274 SER275 SER276 ASP277 CYS278 GLN279 ASP280 GLU281 GLU282 GLY283 ARG284 LYS285 GLY286 ASN287 LYS288 LEU289 TYR290 TYR291 ASN292 PHE293 PRO294 TRP295 GLY296 LYS297 GLU298 LEU299 ILE300 GLU301 THR302 LEU303 TRP304 ASN305 LEU306 GLY307 ASP308 HIS309 GLU310 LEU311 LEU312 HIS313 MET314 TYR315 PRO316 GLY317 ASN318 VAL319 SER320 LYS321 LEU322 HIS323 GLY324 ARG325 ASP326 GLY327 ARG328 LYS329 ASN330 VAL331 VAL332 PRO333 CYS334 VAL335 LEU336 SER337 VAL338 ASN339 GLY340 ASP341 LEU342 ASP343 ARG344 GLY345 MET346 LEU347 ALA348 TYR349 LEU350 TYR351 ASP352 SER353 PHE354 GLN355 THR362 ARG363 LYS364 LYS365 ASN366 LEU367 HIS368 ARG369 LYS370 VAL371 LEU372 LYS373 LEU374 HIS375 PRO376 CYS377 LEU378 ALA379 PRO380 ILE381 LYS382 VAL383 ALA384 LEU385 ASP386 VAL387 GLY388 ARG389 GLY390 PRO391 THR392 LEU393 GLU394 LEU395 ARG396 GLN397 VAL398 CYS399 GLN400 GLY401 LEU402 PHE403 ASN404 GLU405 LEU406 LEU407 GLU408 ASN409 GLY410 ILE411 SER412 VAL413 TRP414 PRO415 GLY416 TYR417 LEU418 GLU419 THR420 MET421 GLN422 SER423 SER424 LEU425 GLU426 GLN427 LEU428 TYR429 SER430 LYS431 TYR432 ASP433 GLU434 MET435 SER436 ILE437 LEU438 PHE439 THR440 VAL441 LEU442 VAL443 THR444 GLU445 THR446 THR447 LEU448 GLU449 ASN450 GLY451 LEU452 ILE453 HIS454 LEU455 ARG456 SER457 ARG458 ASP459 THR460 THR461 MET462 LYS463 GLU464 MET465 MET466 HIS467 ILE468 SER469 LYS470 LEU471 LYS472 ASP473 PHE474 LEU475 ILE476 LYS477 TYR478 ILE479 SER480 SER481 ALA482 LYS483 ASN484 VAL485
Unit 3 LEU67 ALA68 LEU69 LEU70 GLU71 ILE72 CYS73 GLN74 ARG75 ARG76 HIS77 PHE78 LEU79 SER80 GLY81 SER82 LYS83 GLN84 GLN85 LEU86 SER87 ARG88 ASP89 SER90 LEU91 LEU92 SER93 GLY94 CYS95 HIS96 PRO97 GLY98 PHE99 GLY100 PRO101 LEU102 GLY103 VAL104 GLU105 LEU106 ARG107 LYS108 ASN109 LEU110 ALA111 ALA112 GLU113 TRP114 TRP115 THR116 SER117 VAL118 VAL119 VAL120 PHE121 ARG122 GLU123 GLN124 VAL125 PHE126 PRO127 VAL128 ASP129 ALA130 LEU131 HIS132 HIS133 LYS134 PRO135 GLY136 PRO137 LYS180 LEU181 ARG182 GLU183 ASN184 LEU185 LEU186 HIS187 GLY188 ALA189 LEU190 GLU191 HIS192 TYR193 VAL194 ASN195 CYS196 LEU197 ASP198 LEU199 VAL200 ASN201 LYS202 ARG203 LEU204 PRO205 TYR206 GLY207 LEU208 ALA209 GLN210 ILE211 GLY212 VAL213 CYS214 PHE215 HIS216 PRO217 VAL218 PHE219 GLY227 VAL228 LYS229 SER230 ILE231 GLY232 GLU233 LYS234 THR235 GLU236 ALA237 SER238 LEU239 VAL240 TRP241 PHE242 THR243 PRO244 PRO245 ARG246 THR247 SER248 ASN249 GLN250 TRP251 LEU252 ASP253 PHE254 TRP255 LEU256 ARG257 HIS258 ARG259 LEU260 GLN261 TRP262 TRP263 ARG264 LYS265 PHE266 ALA267 MET268 SER269 PRO270 SER271 ASN272 PHE273 SER274 SER275 SER276 ASP277 CYS278 GLN279 ASP280 GLU281 GLU282 GLY283 ARG284 LYS285 GLY286 ASN287 LYS288 LEU289 TYR290 TYR291 ASN292 PHE293 PRO294 TRP295 GLY296 LYS297 GLU298 LEU299 ILE300 GLU301 THR302 LEU303 TRP304 ASN305 LEU306 GLY307 ASP308 HIS309 GLU310 LEU311 LEU312 HIS313 MET314 TYR315 PRO316 GLY317 ASN318 VAL319 SER320 LYS321 LEU322 HIS323 GLY324 ARG325 ASP326 GLY327 ARG328 LYS329 ASN330 VAL331 VAL332 PRO333 CYS334 VAL335 LEU336 SER337 VAL338 ASN339 GLY340 ASP341 LEU342 ASP343 ARG344 GLY345 MET346 LEU347 ALA348 TYR349 LEU350 TYR351 ASP352 SER353 PHE354 GLN355 HIS368 ARG369 LYS370 VAL371 LEU372 LYS373 LEU374 HIS375 PRO376 CYS377 LEU378 ALA379 PRO380 ILE381 LYS382 VAL383 ALA384 LEU385 ASP386 VAL387 GLY388 ARG389 GLY390 PRO391 THR392 LEU393 GLU394 LEU395 ARG396 GLN397 VAL398 CYS399 GLN400 GLY401 LEU402 PHE403 ASN404 GLU405 LEU406 LEU407 GLU408 ASN409 GLY410 ILE411 SER412 VAL413 TRP414 PRO415 GLY416 TYR417 LEU418 GLU419 THR420 MET421 GLN422 SER423 SER424 LEU425 GLU426 GLN427 LEU428 TYR429 SER430 LYS431 TYR432 ASP433 GLU434 MET435 SER436 ILE437 LEU438 PHE439 THR440 VAL441 LEU442 VAL443 THR444 GLU445 THR446 THR447 LEU448 GLU449 ASN450 GLY451 LEU452 ILE453 HIS454 LEU455 ARG456 SER457 ARG458 ASP459 THR460 THR461 MET462 LYS463 GLU464 MET465 MET466 HIS467 ILE468 SER469 LYS470 LEU471 LYS472 ASP473 PHE474 LEU475 ILE476 LYS477 TYR478 ILE479 SER480 SER481 ALA482 LYS483 ASN484 VAL485
Nucleic acids
Unit 5 DA3 DA4 DA5 DA6 DC7 DG8 DA9 DG10 DG11 DG12 DC13 DC14 DA15 DG16 DT17 DG18 DC19 DC20 DG21 DT22 DA23 DOC24
Other macromolecules
Unit 4 DA1 DG2 DC3 DG4 DA5 DT6 DA7 DC8 DG9 DG10 DC11 DA12 DC13 DT14 DG15 DG16 DC17 DC18 DC19 DT20 DC21 DG22 DT23 DT24 DT25 DT26
Ligands
Unit 6 1RY1301 MG1302 MG1303
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany