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Sequence, Chains, Asymmetric and Biological Units

Title SH3-II OF DROSOPHILA RIM-BINDING PROTEIN WITH APLIP1 PEPTIDE
Keywords SYNAPSE, ACTIVE ZONE, RIM-BINDING PROTEIN, SH3 DOMAIN, APLIP
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4Z88     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RIM-BINDING PROTEIN, ISOFORM F  A 65 527 0
2  Protein   RIM-BINDING PROTEIN, ISOFORM F  B 66 538 0
3  Protein   RIM-BINDING PROTEIN, ISOFORM F  C 65 528 0
4  Protein   RIM-BINDING PROTEIN, ISOFORM F  D 70 564 0
5  Protein   RIM-BINDING PROTEIN, ISOFORM F  E 63 506 0
6  Protein   RIM-BINDING PROTEIN, ISOFORM F  F 67 543 0
7  Protein   RIM-BINDING PROTEIN, ISOFORM F  G 67 537 0
8  Protein   RIM-BINDING PROTEIN, ISOFORM F  H 70 564 0
9  Protein   RIM-BINDING PROTEIN, ISOFORM F  I 66 538 0
10  Protein   RIM-BINDING PROTEIN, ISOFORM F  J 68 550 0
11  Protein   RIM-BINDING PROTEIN, ISOFORM F  K 66 537 0
12  Protein   RIM-BINDING PROTEIN, ISOFORM F  L 68 550 0
13  Protein   JNK-INTERACTING PROTEIN 1  M 12 94 1
14  Protein   JNK-INTERACTING PROTEIN 1  N 5 39 0
15  Protein   JNK-INTERACTING PROTEIN 1  O 11 83 1
16  Protein   JNK-INTERACTING PROTEIN 1  P 8 70 0
17  Protein   JNK-INTERACTING PROTEIN 1  Q 14 116 1
18  Protein   JNK-INTERACTING PROTEIN 1  R 7 59 0
19  Protein   JNK-INTERACTING PROTEIN 1  S 14 116 1
20  Protein   JNK-INTERACTING PROTEIN 1  T 5 46 0
21  Protein   JNK-INTERACTING PROTEIN 1  U 13 105 1
22  Protein   JNK-INTERACTING PROTEIN 1  V 7 63 0
23  Protein   JNK-INTERACTING PROTEIN 1  W 13 105 1
24  Protein   JNK-INTERACTING PROTEIN 1  X 7 63 0
25  Ligand   RIM-BINDING PROTEIN, ISOFORM F  A 1 0 5
26  Ligand   RIM-BINDING PROTEIN, ISOFORM F  B 1 0 5
27  Ligand   RIM-BINDING PROTEIN, ISOFORM F  C 1 0 5
28  Ligand   RIM-BINDING PROTEIN, ISOFORM F  E 1 0 5
29  Ligand   RIM-BINDING PROTEIN, ISOFORM F  F 1 0 5
30  Ligand   RIM-BINDING PROTEIN, ISOFORM F  G 1 0 5
31  Ligand   RIM-BINDING PROTEIN, ISOFORM F  H 1 0 5
32  Ligand   RIM-BINDING PROTEIN, ISOFORM F  I 1 0 5
33  Ligand   RIM-BINDING PROTEIN, ISOFORM F  J 1 0 5
34  Ligand   RIM-BINDING PROTEIN, ISOFORM F  K 1 0 5
35  Ligand   RIM-BINDING PROTEIN, ISOFORM F  L 1 0 5
36 Water     55 0 57
total       983 7441 118
Proteins
Unit 1 ARG1318 TYR1319 PHE1320 VAL1321 ALA1322 MET1323 PHE1324 ASP1325 TYR1326 ASP1327 PRO1328 SER1329 THR1330 MET1331 SER1332 PRO1333 ASN1334 PRO1335 ASP1336 GLY1337 CYS1338 ASP1339 GLU1340 GLU1341 LEU1342 PRO1343 PHE1344 GLN1345 GLU1346 GLY1347 ASP1348 THR1349 ILE1350 LYS1351 VAL1352 PHE1353 GLY1354 ASP1355 LYS1356 ASP1357 ALA1358 ASP1359 GLY1360 PHE1361 TYR1362 TRP1363 GLY1364 GLU1365 LEU1366 ARG1367 GLY1368 ARG1369 ARG1370 GLY1371 TYR1372 VAL1373 PRO1374 HIS1375 ASN1376 MET1377 VAL1378 SER1379 GLU1380 VAL1381 GLU1382
Unit 2 PHE1317 ARG1318 TYR1319 PHE1320 VAL1321 ALA1322 MET1323 PHE1324 ASP1325 TYR1326 ASP1327 PRO1328 SER1329 THR1330 MET1331 SER1332 PRO1333 ASN1334 PRO1335 ASP1336 GLY1337 CYS1338 ASP1339 GLU1340 GLU1341 LEU1342 PRO1343 PHE1344 GLN1345 GLU1346 GLY1347 ASP1348 THR1349 ILE1350 LYS1351 VAL1352 PHE1353 GLY1354 ASP1355 LYS1356 ASP1357 ALA1358 ASP1359 GLY1360 PHE1361 TYR1362 TRP1363 GLY1364 GLU1365 LEU1366 ARG1367 GLY1368 ARG1369 ARG1370 GLY1371 TYR1372 VAL1373 PRO1374 HIS1375 ASN1376 MET1377 VAL1378 SER1379 GLU1380 VAL1381 GLU1382
Unit 3 PHE1317 ARG1318 TYR1319 PHE1320 VAL1321 ALA1322 MET1323 PHE1324 ASP1325 TYR1326 ASP1327 PRO1328 SER1329 THR1330 MET1331 SER1332 PRO1333 ASN1334 PRO1335 ASP1336 GLY1337 CYS1338 ASP1339 GLU1340 GLU1341 LEU1342 PRO1343 PHE1344 GLN1345 GLU1346 GLY1347 ASP1348 THR1349 ILE1350 LYS1351 VAL1352 PHE1353 GLY1354 ASP1355 LYS1356 ASP1357 ALA1358 ASP1359 GLY1360 PHE1361 TYR1362 TRP1363 GLY1364 GLU1365 LEU1366 ARG1367 GLY1368 ARG1369 ARG1370 GLY1371 TYR1372 VAL1373 PRO1374 HIS1375 ASN1376 MET1377 VAL1378 SER1379 GLU1380 VAL1381
Unit 4 GLY1313 SER1314 PRO1315 GLU1316 PHE1317 ARG1318 TYR1319 PHE1320 VAL1321 ALA1322 MET1323 PHE1324 ASP1325 TYR1326 ASP1327 PRO1328 SER1329 THR1330 MET1331 SER1332 PRO1333 ASN1334 PRO1335 ASP1336 GLY1337 CYS1338 ASP1339 GLU1340 GLU1341 LEU1342 PRO1343 PHE1344 GLN1345 GLU1346 GLY1347 ASP1348 THR1349 ILE1350 LYS1351 VAL1352 PHE1353 GLY1354 ASP1355 LYS1356 ASP1357 ALA1358 ASP1359 GLY1360 PHE1361 TYR1362 TRP1363 GLY1364 GLU1365 LEU1366 ARG1367 GLY1368 ARG1369 ARG1370 GLY1371 TYR1372 VAL1373 PRO1374 HIS1375 ASN1376 MET1377 VAL1378 SER1379 GLU1380 VAL1381 GLU1382
Unit 5 TYR1319 PHE1320 VAL1321 ALA1322 MET1323 PHE1324 ASP1325 TYR1326 ASP1327 PRO1328 SER1329 THR1330 MET1331 SER1332 PRO1333 ASN1334 PRO1335 ASP1336 GLY1337 CYS1338 ASP1339 GLU1340 GLU1341 LEU1342 PRO1343 PHE1344 GLN1345 GLU1346 GLY1347 ASP1348 THR1349 ILE1350 LYS1351 VAL1352 PHE1353 GLY1354 ASP1355 LYS1356 ASP1357 ALA1358 ASP1359 GLY1360 PHE1361 TYR1362 TRP1363 GLY1364 GLU1365 LEU1366 ARG1367 GLY1368 ARG1369 ARG1370 GLY1371 TYR1372 VAL1373 PRO1374 HIS1375 ASN1376 MET1377 VAL1378 SER1379 GLU1380 VAL1381
Unit 6 SER1314 PRO1315 GLU1316 PHE1317 ARG1318 TYR1319 PHE1320 VAL1321 ALA1322 MET1323 PHE1324 ASP1325 TYR1326 ASP1327 PRO1328 SER1329 THR1330 MET1331 SER1332 PRO1333 ASN1334 PRO1335 ASP1336 GLY1337 CYS1338 ASP1339 GLU1340 GLU1341 LEU1342 PRO1343 PHE1344 GLN1345 GLU1346 GLY1347 ASP1348 THR1349 ILE1350 LYS1351 VAL1352 PHE1353 GLY1354 ASP1355 LYS1356 ASP1357 ALA1358 ASP1359 GLY1360 PHE1361 TYR1362 TRP1363 GLY1364 GLU1365 LEU1366 ARG1367 GLY1368 ARG1369 ARG1370 GLY1371 TYR1372 VAL1373 PRO1374 HIS1375 ASN1376 MET1377 VAL1378 SER1379 GLU1380
Unit 7 PRO1315 GLU1316 PHE1317 ARG1318 TYR1319 PHE1320 VAL1321 ALA1322 MET1323 PHE1324 ASP1325 TYR1326 ASP1327 PRO1328 SER1329 THR1330 MET1331 SER1332 PRO1333 ASN1334 PRO1335 ASP1336 GLY1337 CYS1338 ASP1339 GLU1340 GLU1341 LEU1342 PRO1343 PHE1344 GLN1345 GLU1346 GLY1347 ASP1348 THR1349 ILE1350 LYS1351 VAL1352 PHE1353 GLY1354 ASP1355 LYS1356 ASP1357 ALA1358 ASP1359 GLY1360 PHE1361 TYR1362 TRP1363 GLY1364 GLU1365 LEU1366 ARG1367 GLY1368 ARG1369 ARG1370 GLY1371 TYR1372 VAL1373 PRO1374 HIS1375 ASN1376 MET1377 VAL1378 SER1379 GLU1380 VAL1381
Unit 8 GLY1313 SER1314 PRO1315 GLU1316 PHE1317 ARG1318 TYR1319 PHE1320 VAL1321 ALA1322 MET1323 PHE1324 ASP1325 TYR1326 ASP1327 PRO1328 SER1329 THR1330 MET1331 SER1332 PRO1333 ASN1334 PRO1335 ASP1336 GLY1337 CYS1338 ASP1339 GLU1340 GLU1341 LEU1342 PRO1343 PHE1344 GLN1345 GLU1346 GLY1347 ASP1348 THR1349 ILE1350 LYS1351 VAL1352 PHE1353 GLY1354 ASP1355 LYS1356 ASP1357 ALA1358 ASP1359 GLY1360 PHE1361 TYR1362 TRP1363 GLY1364 GLU1365 LEU1366 ARG1367 GLY1368 ARG1369 ARG1370 GLY1371 TYR1372 VAL1373 PRO1374 HIS1375 ASN1376 MET1377 VAL1378 SER1379 GLU1380 VAL1381 GLU1382
Unit 9 PHE1317 ARG1318 TYR1319 PHE1320 VAL1321 ALA1322 MET1323 PHE1324 ASP1325 TYR1326 ASP1327 PRO1328 SER1329 THR1330 MET1331 SER1332 PRO1333 ASN1334 PRO1335 ASP1336 GLY1337 CYS1338 ASP1339 GLU1340 GLU1341 LEU1342 PRO1343 PHE1344 GLN1345 GLU1346 GLY1347 ASP1348 THR1349 ILE1350 LYS1351 VAL1352 PHE1353 GLY1354 ASP1355 LYS1356 ASP1357 ALA1358 ASP1359 GLY1360 PHE1361 TYR1362 TRP1363 GLY1364 GLU1365 LEU1366 ARG1367 GLY1368 ARG1369 ARG1370 GLY1371 TYR1372 VAL1373 PRO1374 HIS1375 ASN1376 MET1377 VAL1378 SER1379 GLU1380 VAL1381 GLU1382
Unit 10 SER1314 PRO1315 GLU1316 PHE1317 ARG1318 TYR1319 PHE1320 VAL1321 ALA1322 MET1323 PHE1324 ASP1325 TYR1326 ASP1327 PRO1328 SER1329 THR1330 MET1331 SER1332 PRO1333 ASN1334 PRO1335 ASP1336 GLY1337 CYS1338 ASP1339 GLU1340 GLU1341 LEU1342 PRO1343 PHE1344 GLN1345 GLU1346 GLY1347 ASP1348 THR1349 ILE1350 LYS1351 VAL1352 PHE1353 GLY1354 ASP1355 LYS1356 ASP1357 ALA1358 ASP1359 GLY1360 PHE1361 TYR1362 TRP1363 GLY1364 GLU1365 LEU1366 ARG1367 GLY1368 ARG1369 ARG1370 GLY1371 TYR1372 VAL1373 PRO1374 HIS1375 ASN1376 MET1377 VAL1378 SER1379 GLU1380 VAL1381
Unit 11 GLU1316 PHE1317 ARG1318 TYR1319 PHE1320 VAL1321 ALA1322 MET1323 PHE1324 ASP1325 TYR1326 ASP1327 PRO1328 SER1329 THR1330 MET1331 SER1332 PRO1333 ASN1334 PRO1335 ASP1336 GLY1337 CYS1338 ASP1339 GLU1340 GLU1341 LEU1342 PRO1343 PHE1344 GLN1345 GLU1346 GLY1347 ASP1348 THR1349 ILE1350 LYS1351 VAL1352 PHE1353 GLY1354 ASP1355 LYS1356 ASP1357 ALA1358 ASP1359 GLY1360 PHE1361 TYR1362 TRP1363 GLY1364 GLU1365 LEU1366 ARG1367 GLY1368 ARG1369 ARG1370 GLY1371 TYR1372 VAL1373 PRO1374 HIS1375 ASN1376 MET1377 VAL1378 SER1379 GLU1380 VAL1381
Unit 12 SER1314 PRO1315 GLU1316 PHE1317 ARG1318 TYR1319 PHE1320 VAL1321 ALA1322 MET1323 PHE1324 ASP1325 TYR1326 ASP1327 PRO1328 SER1329 THR1330 MET1331 SER1332 PRO1333 ASN1334 PRO1335 ASP1336 GLY1337 CYS1338 ASP1339 GLU1340 GLU1341 LEU1342 PRO1343 PHE1344 GLN1345 GLU1346 GLY1347 ASP1348 THR1349 ILE1350 LYS1351 VAL1352 PHE1353 GLY1354 ASP1355 LYS1356 ASP1357 ALA1358 ASP1359 GLY1360 PHE1361 TYR1362 TRP1363 GLY1364 GLU1365 LEU1366 ARG1367 GLY1368 ARG1369 ARG1370 GLY1371 TYR1372 VAL1373 PRO1374 HIS1375 ASN1376 MET1377 VAL1378 SER1379 GLU1380 VAL1381
Unit 13 ARG153 LYS154 LEU155 PRO156 GLU157 ILE158 PRO159 LYS160 ASN161 LYS162 LYS163 NH2164
Unit 14 LEU155 PRO156 GLU157 ILE158 PRO159
Unit 15 LYS154 LEU155 PRO156 GLU157 ILE158 PRO159 LYS160 ASN161 LYS162 LYS163 NH2164
Unit 16 ARG152 ARG153 LYS154 LEU155 PRO156 GLU157 ILE158 PRO159
Unit 17 ARG151 ARG152 ARG153 LYS154 LEU155 PRO156 GLU157 ILE158 PRO159 LYS160 ASN161 LYS162 LYS163 NH2164
Unit 18 ARG153 LYS154 LEU155 PRO156 GLU157 ILE158 PRO159
Unit 19 ARG151 ARG152 ARG153 LYS154 LEU155 PRO156 GLU157 ILE158 PRO159 LYS160 ASN161 LYS162 LYS163 NH2164
Unit 20 ARG152 ARG153 LYS154 LEU155 PRO156
Unit 21 ARG152 ARG153 LYS154 LEU155 PRO156 GLU157 ILE158 PRO159 LYS160 ASN161 LYS162 LYS163 NH2164
Unit 22 ARG152 ARG153 LYS154 LEU155 PRO156 GLU157 ILE158
Unit 23 ARG152 ARG153 LYS154 LEU155 PRO156 GLU157 ILE158 PRO159 LYS160 ASN161 LYS162 LYS163 NH2164
Unit 24 ARG152 ARG153 LYS154 LEU155 PRO156 GLU157 ILE158
Ligands
Unit 25 PO41401
Unit 26 PO41401
Unit 27 PO41401
Unit 28 PO41401
Unit 29 PO41401
Unit 30 PO41401
Unit 31 PO41401
Unit 32 PO41401
Unit 33 PO41401
Unit 34 PO41401
Unit 35 PO41401
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany