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Sequence, Chains, Asymmetric and Biological Units

Title CD1A TERNARY COMPLEX WITH ENDOGENOUS LIPIDS AND BK6 TCR
Keywords CD1A, TCR, IMMUNE COMPLEX, LIPID ANTIGEN, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4X6D     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   T-CELL SURFACE GLYCOPROTEIN CD1A  A 267 2153 0
2  Protein   BETA-2-MICROGLOBULIN  B 86 719 0
3  Protein   T-CELL SURFACE GLYCOPROTEIN CD1A  C 218 1787 0
4  Protein   BETA-2-MICROGLOBULIN  D 78 657 0
5  Protein   TCR ALPHA  E 189 1474 0
6  Protein   TCR BETA  F 241 1917 0
7  Protein   TCR ALPHA  G 200 1560 0
8  Protein   TCR BETA  H 242 1922 0
9  Ligand    I 3 0 38
10  Ligand    J 3 0 38
11  Ligand   T-CELL SURFACE GLYCOPROTEIN CD1A  A 1 0 20
12  Ligand   T-CELL SURFACE GLYCOPROTEIN CD1A  C 1 0 18
13 Water     1 0 1
total       1530 12189 115
Proteins
Unit 1 PRO7 LEU8 SER9 PHE10 HIS11 VAL12 ILE13 TRP14 ILE15 ALA16 SER17 PHE18 LYS24 GLN25 ASN26 LEU27 VAL28 SER29 GLY30 TRP31 LEU32 SER33 ASP34 LEU35 GLN36 THR37 HIS38 THR39 TRP40 ASP41 SER42 ASN43 SER44 SER45 THR46 ILE47 VAL48 PHE49 LEU50 TRP51 PRO52 TRP53 SER54 ARG55 GLY56 ASN57 PHE58 SER59 ASN60 GLU61 GLU62 TRP63 LYS64 GLU65 LEU66 GLU67 THR68 LEU69 PHE70 ARG71 ILE72 ARG73 THR74 ILE75 ARG76 SER77 PHE78 GLU79 GLY80 ILE81 ARG82 ARG83 TYR84 ALA85 HIS86 GLU87 LEU88 GLN89 PHE90 GLU91 TYR92 PRO93 PHE94 GLU95 ILE96 GLN97 VAL98 THR99 GLY100 GLY101 CYS102 GLU103 LEU104 HIS105 SER106 GLY107 LYS108 VAL109 SER110 GLY111 SER112 PHE113 LEU114 GLN115 LEU116 ALA117 TYR118 GLN119 GLY120 SER121 ASP122 PHE123 VAL124 SER125 PHE126 GLN127 ASN128 ASN129 SER130 TRP131 LEU132 PRO133 TYR134 PRO135 VAL136 ALA137 GLY138 ASN139 MET140 ALA141 LYS142 HIS143 PHE144 CYS145 LYS146 VAL147 LEU148 ASN149 GLN150 ASN151 GLN152 HIS153 GLU154 ASN155 ASP156 ILE157 THR158 HIS159 ASN160 LEU161 LEU162 SER163 ASP164 THR165 CYS166 PRO167 ARG168 PHE169 ILE170 LEU171 GLY172 LEU173 LEU174 ASP175 ALA176 GLY177 LYS178 ALA179 HIS180 LEU181 GLN182 ARG183 GLN184 VAL185 LYS186 PRO187 GLU188 ALA189 TRP190 LEU191 SER192 HIS193 GLY194 PRO195 SER196 PRO197 GLY198 PRO199 GLY200 HIS201 LEU202 GLN203 LEU204 VAL205 CYS206 HIS207 VAL208 SER209 GLY210 PHE211 TYR212 PRO213 LYS214 PRO215 VAL216 TRP217 VAL218 MET219 TRP220 MET221 ARG222 GLY223 GLU224 GLN225 GLU226 GLN227 GLN228 GLY229 THR230 GLN231 ARG232 GLY233 ASP234 ILE235 LEU236 PRO237 SER238 ALA239 ASP240 GLY241 THR242 TRP243 TYR244 LEU245 ARG246 ALA247 THR248 LEU249 GLU250 VAL251 ALA252 ALA253 GLY254 GLU255 ALA256 ALA257 ASP258 LEU259 SER260 CYS261 ARG262 VAL263 LYS264 HIS265 SER266 SER267 LEU268 GLU269 GLY270 GLN271 ASP272 ILE273 VAL274 LEU275 TYR276 TRP277 GLU278
Unit 2 ILE1 GLN2 ARG3 THR4 PRO5 LYS6 ILE7 GLN8 VAL9 TYR10 SER11 ARG12 HIS13 PRO14 ALA15 GLU16 ASN17 GLY18 LYS19 SER20 ASN21 PHE22 LEU23 ASN24 CYS25 TYR26 VAL27 SER28 GLY29 PHE30 HIS31 PRO32 SER33 ASP34 ILE35 GLU36 VAL37 ASP38 LYS48 VAL49 GLU50 HIS51 SER52 ASP53 LEU54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 LEU64 LEU65 TYR66 TYR67 THR68 GLU69 PHE70 THR71 PRO72 THR73 GLU74 LYS75 ASP76 GLU77 TYR78 ALA79 CYS80 ARG81 VAL82 ASN83 HIS84 VAL85 THR86 LEU87 SER88 GLN89 PRO90 LYS91 ILE92 VAL93 LYS94 TRP95
Unit 3 PRO7 LEU8 SER9 PHE10 HIS11 VAL12 ILE13 TRP14 ILE15 ALA16 SER17 PHE18 TYR19 ASN20 HIS21 SER22 TRP23 LYS24 GLN25 ASN26 LEU27 VAL28 SER29 GLY30 TRP31 LEU32 SER33 ASP34 LEU35 GLN36 THR37 HIS38 THR39 TRP40 ASP41 SER42 ASN43 SER44 SER45 THR46 ILE47 VAL48 PHE49 LEU50 TRP51 PRO52 TRP53 SER54 ARG55 GLY56 ASN57 PHE58 SER59 ASN60 GLU61 GLU62 TRP63 LYS64 GLU65 LEU66 GLU67 THR68 LEU69 PHE70 ARG71 ILE72 ARG73 THR74 ILE75 ARG76 SER77 PHE78 GLU79 GLY80 ILE81 ARG82 ARG83 TYR84 ALA85 HIS86 GLU87 LEU88 GLN89 PHE90 GLU91 TYR92 PRO93 PHE94 GLU95 ILE96 GLN97 VAL98 THR99 GLY100 GLY101 CYS102 GLU103 LEU104 HIS105 SER106 GLY107 LYS108 VAL109 SER110 GLY111 SER112 PHE113 LEU114 GLN115 LEU116 ALA117 TYR118 GLN119 GLY120 SER121 ASP122 PHE123 VAL124 SER125 PHE126 GLN127 ASN128 ASN129 SER130 TRP131 LEU132 PRO133 TYR134 PRO135 VAL136 ALA137 GLY138 ASN139 MET140 ALA141 LYS142 HIS143 PHE144 CYS145 LYS146 VAL147 LEU148 ASN149 GLN150 ASN151 GLN152 HIS153 GLU154 ASN155 ASP156 ILE157 THR158 HIS159 ASN160 LEU161 LEU162 SER163 ASP164 THR165 CYS166 PRO167 ARG168 PHE169 ILE170 LEU171 GLY172 LEU173 LEU174 ASP175 ALA176 GLY177 LYS178 ALA179 HIS180 LEU181 GLN182 ARG183 GLN184 VAL185 LYS186 PRO187 LEU191 SER192 HIS193 CYS206 HIS207 VAL208 SER209 GLY210 PHE211 TYR212 PRO213 LYS214 PRO215 VAL216 TRP217 VAL218 GLN231 ARG232 GLY233 ASP234 ILE235 LEU236 PRO237 SER238 ALA239 ASP240 GLY241 THR242 TRP243 TYR244 LEU245 ARG246 ALA247 THR248 SER266 SER267 LEU268
Unit 4 ILE1 GLN2 ARG3 THR4 PRO5 LYS6 ILE7 GLN8 VAL9 TYR10 SER11 PHE22 LEU23 ASN24 CYS25 TYR26 VAL27 SER28 GLY29 PHE30 HIS31 PRO32 SER33 ASP34 ILE35 GLU36 VAL37 ASP38 LEU39 LEU40 LYS41 ASN42 GLY43 GLU44 ARG45 ILE46 GLU47 LYS48 VAL49 GLU50 HIS51 SER52 ASP53 LEU54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 LEU64 LEU65 TYR66 TYR67 THR68 GLU69 TYR78 ALA79 CYS80 ARG81 VAL82 ASN83 HIS84 VAL85 THR86 LEU87 SER88 GLN89 PRO90 LYS91 ILE92 VAL93 LYS94 TRP95 ASP96
Unit 5 GLU2 VAL3 GLU4 GLN5 ASP6 PRO7 GLY8 PRO9 LEU10 SER11 VAL12 PRO13 GLU14 GLY15 ALA16 ILE17 VAL18 SER19 LEU20 ASN21 CYS22 THR23 TYR24 SER25 ASN26 SER27 ALA28 PHE29 GLN30 TYR31 PHE32 MET33 TRP34 TYR35 ARG36 GLN37 TYR38 SER39 ARG40 LYS41 GLY42 PRO43 GLU44 LEU45 LEU46 MET47 TYR48 THR49 TYR50 SER51 SER52 GLY53 ASN54 LYS55 GLU56 ASP57 GLY58 ARG59 PHE60 THR61 ALA62 GLN63 VAL64 ASP65 LYS66 SER67 SER68 LYS69 TYR70 ILE71 SER72 LEU73 PHE74 ILE75 ARG76 ASP77 SER78 GLN79 PRO80 SER81 ASP82 SER83 ALA84 THR85 TYR86 LEU87 CYS88 ALA89 MET90 SER91 THR92 SER93 LEU94 PRO95 ASN96 ALA97 GLY98 LYS99 SER100 THR101 PHE102 GLY103 ASP104 GLY105 THR106 THR107 LEU108 THR109 VAL110 LYS111 PRO112 ASN113 ILE114 GLN115 ASN116 PRO117 ASP118 PRO119 ALA120 VAL121 TYR122 GLN123 LEU124 ARG125 ASP126 SER133 VAL134 CYS135 LEU136 PHE137 THR138 ASP139 PHE140 ASP141 SER142 GLN143 THR144 ASN145 VAL146 SER147 GLN148 SER149 LYS150 ASP151 SER152 ASP153 VAL154 TYR155 ILE156 THR157 ASP158 LYS159 CYS160 VAL161 LEU162 ASP163 MET164 ARG165 SER166 MET167 ASP168 PHE169 LYS170 SER171 ASN172 SER173 ALA174 VAL175 ALA176 TRP177 SER178 ALA184 CYS185 ALA186 ASN187 ALA188 PHE189 ASN190 ASN191 SER192 ILE193 ILE194 PRO195 GLU196 ASP197 THR198 PHE199 PHE200 PRO201
Unit 6 GLY3 VAL4 THR5 GLN6 THR7 PRO8 LYS9 PHE10 ARG11 VAL12 LEU13 LYS14 THR15 GLY16 GLN17 SER18 MET19 THR20 LEU21 LEU22 CYS23 ALA24 GLN25 ASP26 MET27 ASN28 HIS29 GLU30 TYR31 MET32 TYR33 TRP34 TYR35 ARG36 GLN37 ASP38 PRO39 GLY40 MET41 GLY42 LEU43 ARG44 LEU45 ILE46 HIS47 TYR48 SER49 VAL50 GLY51 GLU52 GLY53 THR54 THR55 ALA56 LYS57 GLY58 GLU59 VAL60 PRO61 ASP62 GLY63 TYR64 ASN65 VAL66 SER67 ARG68 LEU69 LYS70 LYS71 GLN72 ASN73 PHE74 LEU75 LEU76 GLY77 LEU78 GLU79 SER80 ALA81 ALA82 PRO83 SER84 GLN85 THR86 SER87 VAL88 TYR89 PHE90 CYS91 ALA92 SER93 ARG94 TYR95 PHE96 LEU97 PRO98 THR99 GLN100 GLY101 MET102 GLY103 ALA104 PHE105 PHE106 GLY107 GLN108 GLY109 THR110 ARG111 LEU112 THR113 VAL114 VAL115 GLU116 ASP117 LEU118 ASN119 LYS120 VAL121 PHE122 PRO123 PRO124 GLU125 VAL126 ALA127 VAL128 PHE129 GLU130 PRO131 SER132 GLU133 ALA134 GLU135 ILE136 SER137 HIS138 THR139 GLN140 LYS141 ALA142 THR143 LEU144 VAL145 CYS146 LEU147 ALA148 THR149 GLY150 PHE151 TYR152 PRO153 ASP154 HIS155 VAL156 GLU157 LEU158 SER159 TRP160 TRP161 VAL162 ASN163 GLY164 LYS165 GLU166 VAL167 HIS168 SER169 GLY170 VAL171 CYS172 THR173 ASP174 PRO175 GLN176 PRO177 LEU178 LYS179 GLU180 GLN181 PRO182 ALA183 LEU184 ASN185 ASP186 SER187 ARG188 TYR189 ALA190 LEU191 SER192 SER193 ARG194 LEU195 ARG196 VAL197 SER198 ALA199 THR200 PHE201 TRP202 GLN203 ASN204 PRO205 ARG206 ASN207 HIS208 PHE209 ARG210 CYS211 GLN212 VAL213 GLN214 PHE215 TYR216 GLY217 LEU218 SER219 GLU220 ASN221 ASP222 GLU223 TRP224 THR225 GLN226 ASP227 ARG228 ALA229 LYS230 PRO231 VAL232 THR233 GLN234 ILE235 VAL236 SER237 ALA238 GLU239 ALA240 TRP241 GLY242 ARG243
Unit 7 GLU2 VAL3 GLU4 GLN5 ASP6 PRO7 GLY8 PRO9 LEU10 SER11 VAL12 PRO13 GLU14 GLY15 ALA16 ILE17 VAL18 SER19 LEU20 ASN21 CYS22 THR23 TYR24 SER25 ASN26 SER27 ALA28 PHE29 GLN30 TYR31 PHE32 MET33 TRP34 TYR35 ARG36 GLN37 TYR38 SER39 ARG40 LYS41 GLY42 PRO43 GLU44 LEU45 LEU46 MET47 TYR48 THR49 TYR50 SER51 SER52 GLY53 ASN54 LYS55 GLU56 ASP57 GLY58 ARG59 PHE60 THR61 ALA62 GLN63 VAL64 ASP65 LYS66 SER67 SER68 LYS69 TYR70 ILE71 SER72 LEU73 PHE74 ILE75 ARG76 ASP77 SER78 GLN79 PRO80 SER81 ASP82 SER83 ALA84 THR85 TYR86 LEU87 CYS88 ALA89 MET90 SER91 THR92 SER93 LEU94 PRO95 ASN96 ALA97 GLY98 LYS99 SER100 THR101 PHE102 GLY103 ASP104 GLY105 THR106 THR107 LEU108 THR109 VAL110 LYS111 PRO112 ASN113 ILE114 GLN115 ASN116 PRO117 ASP118 PRO119 ALA120 VAL121 TYR122 GLN123 LEU124 ARG125 ASP126 SER127 LYS128 SER129 SER130 ASP131 LYS132 SER133 VAL134 CYS135 LEU136 PHE137 THR138 ASP139 PHE140 ASP141 SER142 GLN143 THR144 ASN145 VAL146 SER147 GLN148 SER149 LYS150 ASP151 SER152 ASP153 VAL154 TYR155 ILE156 THR157 ASP158 LYS159 CYS160 VAL161 LEU162 ASP163 MET164 ARG165 SER166 MET167 ASP168 PHE169 LYS170 SER171 ASN172 SER173 ALA174 VAL175 ALA176 TRP177 SER178 ASN179 LYS180 SER181 ASP182 PHE183 ALA184 CYS185 ALA186 ASN187 ALA188 PHE189 ASN190 ASN191 SER192 ILE193 ILE194 PRO195 GLU196 ASP197 THR198 PHE199 PHE200 PRO201
Unit 8 GLY3 VAL4 THR5 GLN6 THR7 PRO8 LYS9 PHE10 ARG11 VAL12 LEU13 LYS14 THR15 GLY16 GLN17 SER18 MET19 THR20 LEU21 LEU22 CYS23 ALA24 GLN25 ASP26 MET27 ASN28 HIS29 GLU30 TYR31 MET32 TYR33 TRP34 TYR35 ARG36 GLN37 ASP38 PRO39 GLY40 MET41 GLY42 LEU43 ARG44 LEU45 ILE46 HIS47 TYR48 SER49 VAL50 GLY51 GLU52 GLY53 THR54 THR55 ALA56 LYS57 GLY58 GLU59 VAL60 PRO61 ASP62 GLY63 TYR64 ASN65 VAL66 SER67 ARG68 LEU69 LYS70 LYS71 GLN72 ASN73 PHE74 LEU75 LEU76 GLY77 LEU78 GLU79 SER80 ALA81 ALA82 PRO83 SER84 GLN85 THR86 SER87 VAL88 TYR89 PHE90 CYS91 ALA92 SER93 ARG94 TYR95 PHE96 LEU97 PRO98 THR99 GLN100 GLY101 MET102 GLY103 ALA104 PHE105 PHE106 GLY107 GLN108 GLY109 THR110 ARG111 LEU112 THR113 VAL114 VAL115 GLU116 ASP117 LEU118 ASN119 LYS120 VAL121 PHE122 PRO123 PRO124 GLU125 VAL126 ALA127 VAL128 PHE129 GLU130 PRO131 SER132 GLU133 ALA134 GLU135 ILE136 SER137 HIS138 THR139 GLN140 LYS141 ALA142 THR143 LEU144 VAL145 CYS146 LEU147 ALA148 THR149 GLY150 PHE151 TYR152 PRO153 ASP154 HIS155 VAL156 GLU157 LEU158 SER159 TRP160 TRP161 VAL162 ASN163 GLY164 LYS165 GLU166 VAL167 HIS168 SER169 GLY170 VAL171 CYS172 THR173 ASP174 PRO175 GLN176 PRO177 LEU178 LYS179 GLU180 GLN181 PRO182 ALA183 LEU184 ASN185 ASP186 SER187 ARG188 TYR189 ALA190 LEU191 SER192 SER193 ARG194 LEU195 ARG196 VAL197 SER198 ALA199 THR200 PHE201 TRP202 GLN203 ASN204 PRO205 ARG206 ASN207 HIS208 PHE209 ARG210 CYS211 GLN212 VAL213 GLN214 PHE215 TYR216 GLY217 LEU218 SER219 GLU220 ASN221 ASP222 GLU223 TRP224 THR225 GLN226 ASP227 ARG228 ALA229 LYS230 PRO231 VAL232 THR233 GLN234 ILE235 VAL236 SER237 ALA238 GLU239 ALA240 TRP241 GLY242 ARG243 ALA244
Ligands
Unit 9 NAG1 NAG2 FUC3
Unit 10 NAG1 NAG2 FUC3
Unit 11 OLA304
Unit 12 PAM304
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany